Anton Bragin agbragin
agbragin
/ gist:d65bd5536f5c9a97d86c7f6600b102ab
Last active
April 11, 2022 08:33
Test task code snippets
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| 1. | |
| ===== | |
| public class Fibo { | |
| public static int fib(int n) { | |
| if (n <= 2) return 1; | |
| return fib(n-1) + fib(n-2); | |
| } | |
| } |
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| <!DOCTYPE html> | |
| <html lang="en"> | |
| <head> | |
| <meta charset="UTF-8"> | |
| <title>Phaser Test</title> | |
| <script src="//cdn.jsdelivr.net/npm/phaser@3.19.0/dist/phaser.js"></script> | |
| <script src="https://cdnjs.cloudflare.com/ajax/libs/keypress/2.1.5/keypress.min.js"></script> | |
| </head> | |
| <body> |
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| import time | |
| class Hashable: | |
| def __init__(self, value, hash_strategy): | |
| self.value = value | |
| self.hash_strategy = hash_strategy | |
| def __eq__(self, other): | |
| return self.value == other.value |
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| import time | |
| class Hashable: | |
| def __init__(self, value): | |
| self.value = value | |
| def __eq__(self, other): | |
| return self.value == other.value |
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| from abc import ABC, abstractmethod | |
| class NA(ABC): | |
| def __init__(self, sequence): | |
| if self._check_sequence(sequence): | |
| self.sequence = sequence | |
| def _check_sequence(self, sequence: str): | |
| valid_symbols = self._get_valid_symbols() |
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| def sheet_data(sheet): | |
| out = list() | |
| sheetIndex = 0 | |
| for X in range(1, s.nrows): | |
| learner = s.row_values(X) |
agbragin
/ 1000genomes.vcf
Last active
April 25, 2017 08:35
Concentrate genome browser test VCF files
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| ##fileformat=VCFv4.1 | |
| ##FILTER=<ID=PASS,Description="All filters passed"> | |
| ##fileDate=20150218 | |
| ##reference=ftp://ftp.1000genomes.ebi.ac.uk//vol1/ftp/technical/reference/phase2_reference_assembly_sequence/hs37d5.fa.gz | |
| ##contig=<ID=1,length=249250621,assembly=b37> | |
| ##contig=<ID=2,length=243199373,assembly=b37> | |
| ##contig=<ID=3,length=198022430,assembly=b37> | |
| ##contig=<ID=4,length=191154276,assembly=b37> | |
| ##contig=<ID=5,length=180915260,assembly=b37> | |
| ##contig=<ID=6,length=171115067,assembly=b37> |
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| chr1 19206 25958 | |
| chr1 30624 38972 | |
| chr1 104110 107779 | |
| chr1 176202 177333 | |
| chr1 363984 372016 | |
| chr1 767746 776319 | |
| chr2 55553 57603 | |
| chr2 77749 80138 | |
| chr2 193081 197187 | |
| chr2 395473 410097 |
agbragin
/ Awsome Pipeline Repositories
Created
April 4, 2017 12:27
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| https://github.com/apache/incubator-airflow | |
| https://github.com/ssadedin/bpipe | |
| https://github.com/bloomreach/briefly | |
| https://github.com/monajemi/clusterjob | |
| https://github.com/tburdett/Conan2 | |
| https://github.com/broadinstitute/cromwell | |
| https://github.com/joergen7/cuneiform | |
| https://github.com/googlegenomics/dockerflow | |
| https://github.com/thieman/dagobah | |
| https://github.com/Factual/drake |
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| # this should be the only path that you need to modify | |
| BASE_PATH = "." | |
| N_THREADS = 40 | |
| # annotation stuff | |
| IDX = BASE_PATH + "/index" | |
| ANNO = BASE_PATH + "/annotation" | |
| ANNO_PREFIX = "Homo_sapiens.GRCh38.80" |