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@ajdecon
ajdecon / gist:1142890
Created August 12, 2011 20:11
Datanode logs
$ cat hadoop-hadoop-datanode-lsc0225.log
2011-08-12 10:08:28,952 INFO org.apache.hadoop.hdfs.server.datanode.DataNode: STARTUP_MSG:
/************************************************************
STARTUP_MSG: Starting DataNode
STARTUP_MSG: host = lsc0225.tfab/10.3.2.225
STARTUP_MSG: args = []
STARTUP_MSG: version = 0.20.203.0
STARTUP_MSG: build = http://svn.apache.org/repos/asf/hadoop/common/branches/branch-0.20-security-203
-r 1099333; compiled by 'oom' on Wed May 4 07:57:50 PDT 2011
************************************************************/
@ajdecon
ajdecon / core-site.xml
Created August 15, 2011 18:50
Problem: Hadoop DataNodes not detected after seemingly fine start-dfs.sh.
<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="configuration.xsl"?>
<!-- Put site-specific property overrides in this file. -->
<configuration>
<property>
<name>fs.default.name</name>
<value>hdfs://lsc0225:54310</value>
@ajdecon
ajdecon / gist:1147537
Created August 15, 2011 19:29
Working Namenode log
2011-08-15 15:24:21,048 INFO org.apache.hadoop.hdfs.server.namenode.NameNode: STARTUP_MSG:
/************************************************************
STARTUP_MSG: Starting NameNode
STARTUP_MSG: host = domU-12-31-39-14-18-82/10.206.27.112
STARTUP_MSG: args = []
STARTUP_MSG: version = 0.20.203.0
STARTUP_MSG: build = http://svn.apache.org/repos/asf/hadoop/common/branches/branch-0.20-security-203 -r 1099333; compiled by 'oom' on Wed May 4 07:57:50 PDT 2011
************************************************************/
2011-08-15 15:24:21,235 INFO org.apache.hadoop.metrics2.impl.MetricsConfig: loaded properties from hadoop-metrics2.properties
2011-08-15 15:24:21,246 INFO org.apache.hadoop.metrics2.impl.MetricsSourceAdapter: MBean for source MetricsSystem,sub=Stats registered.
@ajdecon
ajdecon / core-site.xml
Created August 16, 2011 18:43
EC2 successful test
<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="configuration.xsl"?>
<!-- Put site-specific property overrides in this file. -->
<configuration>
<property>
<name>fs.default.name</name>
<value>hdfs://master:54310</value>
2011-08-16 14:51:24
Full thread dump Java HotSpot(TM) 64-Bit Server VM (14.0-b16 mixed mode):
"Attach Listener" daemon prio=10 tid=0x0000000054805800 nid=0x14da waiting on condition [0x0000000000000000]
java.lang.Thread.State: RUNNABLE
"org.apache.hadoop.hdfs.server.datanode.DataBlockScanner@410d3f0d" daemon prio=10 tid=0x000000005583d800 nid=0x149d waiting on condition [0x00000000429ab000]
java.lang.Thread.State: TIMED_WAITING (sleeping)
at java.lang.Thread.sleep(Native Method)
at org.apache.hadoop.hdfs.server.datanode.DataBlockScanner.run(DataBlockScanner.java:593)
@ajdecon
ajdecon / core-site.xml
Created August 16, 2011 19:05
Local Hadoop test failure
<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="configuration.xsl"?>
<!-- Put site-specific property overrides in this file. -->
<configuration>
<property>
<name>fs.default.name</name>
<value>hdfs://wd0031:54310</value>
</property>
@ajdecon
ajdecon / gist:1307673
Created October 23, 2011 18:22
MPI Attribute caching
C source:
#include <stdio.h>
#include <mpi.h>
int main(int argc, char *argv[]) {
int rank, size;
int key;
int *value;
void* extra_arg; /* unused */
@ajdecon
ajdecon / gist:1307674
Created October 23, 2011 18:23
MPI Attribute caching
C source:
#include <stdio.h>
#include <mpi.h>
int main(int argc, char *argv[]) {
int rank, size;
int key;
int *value;
void* extra_arg; /* unused */
@ajdecon
ajdecon / slurm.rb
Created January 21, 2012 17:37
SLURM recipe for blogpost
# Install packages
%w{munge slurm-llnl slurm-llnl-torque slurm-llnl-basic-plugins slurm-llnl-basic-plugins-dev}.each do |pkg|
package pkg do
action [:install]
end
end
# Munge is used by SLURM for authentication, and requires a few
# pre-conditions.
@ajdecon
ajdecon / default.rb
Created January 21, 2012 21:19
Default SLURM attributes for blogpost
# SLURM attributes
default['slurm']['master'] = "slmaster"
default['slurm']['master_addr'] = "10.0.0.1"
default['slurm']['computes'] = [ "compute1", "compute2" ]
default['slurm']['compute_addrs'] = [ "10.0.1.1", "10.0.1.2" ]
default['slurm']['part_name'] = "production"
default['slurm']['user'] = "slurm"
default['slurm']['cpus'] = "1"
# MUNGE attributes