Alistair Walsh alistairwalsh
alistairwalsh
/ pubmed_search.py
Created
May 17, 2017 06:06
— forked from langner/pubmed_search.py
A class that searches Pubmed for a list of PMIDs via the BioPython Entrez module and returns the results in a simpler dictionary format.
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| """Tools for searching Pubmed for a list of PMIDs. | |
| The goal here is to search for many PMIDs at once, since searching | |
| sequentially can take a long time. Using the the BioPython Entrez module | |
| is super convenient to this end. | |
| The results results are returned in a simple dictionary format. | |
| """ | |
alistairwalsh
/ plos_sunburnt_demo.py
Created
November 25, 2016 01:28
— forked from drewbuschhorn/plos_sunburnt_demo.py
PLOS API code for use with SunBurnt
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| #Sample PLOS api code for use with python Solr library Sunburnt | |
| #( https://github.com/tow/sunburnt ) | |
| #!Note! requires sunburnt's external libraries: httplib2,lxml | |
| #https://groups.google.com/d/topic/plos-api-developers/zv591sFz6TM/discussion | |
| import sunburnt,urllib2 | |
| class PlosInterface(sunburnt.SolrInterface): | |
| def __init__(self,api_key): | |
| plos_url = "http://api.plos.org/search" | |
| #either |