anthony-cros

WIP

anthony-cros

package pedcbimport.pipelines.wes

import utils.Implicits.ProductImplicits
import utils.Implicits.StringImplicits
import utils.Implicits.SeqImplicits

import WesRaw.Cosmic._

// ===========================================================================
object Wes {

anthony-cros

package nebulis.transformation

// ===========================================================================
object Example extends App { // extending App so the body runs as a main() method
  
  val results: Iterable[OutputHybrid] = // "turn a stream of input sample and mutations into a stream of 'hybrid'"
    OutputHybrid.transform(
      samples   = ???, // assume actual data
      mutations = ???)

anthony-cros

---
openapi: "3.0.0"
info:
  version: "0.1.0"
  title: "grinop"
servers:
- url: "https://localhost:9000/api/v0"
paths:
  /auth/signin:
    post:

anthony-cros

# notes:
# - use 4 spaces for display tab
# - repeated tabs get trimmed to one
# - anything beyond ' #' is trimmed (including marker), so are empty lines (post line-trim)
# - \N stand for no value (eg NULL in SQL)
# - PATID, ENCOUTERID and other IDs are inferred from the _id field, including redundant fields

===========================================================================
DEMOGRAPHIC

anthony-cros

{ "stage": "4" }
{ "$eq": { "mycn_status":"amplified" }}
{ "$not": { "stage": 4 }}
{ "$not": { "$lt": { "stage": 4 }}}
{ "$not": { "$not": { "stage": "4" }}}
{ "$not": { "$not": { "$lt": { "stage": 4 }}}}
{ "risk": ["high","low"] }
{ "$nin": { "risk": ["high","low"] }}
{ "$not": { "$in": { "risk": ["high","low"] }}}
{ "$or": [{ "$eq": { "mycn_status":"amplified" }},{ "stage": "4" } ] }

anthony-cros

import React, { Component } from 'react';
import logo from './logo.svg';
import './App.css';

class App extends Component {
  render() {
    return (
      <div className="App">
        <header className="App-header">
          <img src={logo} className="App-logo" alt="logo" />

anthony-cros

package minimal

import scala.scalajs.js
import scala.scalajs.js.annotation.JSImport

object Bindings {

  // ===========================================================================
  // ReactDOM
  

anthony-cros

package minimal

import org.scalajs.dom
import scala.scalajs.js

object App {

  def main(args: Array[String]): Unit = {  

    // prints to console as expected

anthony-cros

object MediumArticle extends App { // reproducing example from https://medium.com/@thijser/doing-cool-data-science-in-java-how-3-dataframe-libraries-stack-up-5e6ccb7b437# 
  import gallia._ // see https://github.com/galliaproject/gallia-core/blob/init/README.md#dependencies

  // ---------------------------------------------------------------------------
  /*
    for reference, pandas way provided in the article:
    
      data = pd.read_csv('urb_cpop1_1_Data.csv')
      filtered = data.drop(data[data.Value == ":"].index)
      filtered['key'] = filtered['CITIES'] + ':' + filtered['INDIC_UR']