Anthony Fejes apfejes
apfejes
/ gist:95405620abb347e1abc87d5708dbc003
Created
January 12, 2018 19:55
A script for NCBI SRA downloads.
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| import argparse | |
| default_prefix = "ftp.sra.ebi.ac.uk/vol1/fastq/" | |
| ascp_prefix = "ftp.sra.ebi.ac.uk:/vol1/fastq/" | |
| default_protocol = "ftp://" | |
| default_suffix = "*.fastq.gz" | |
| default_ascp_line = "ascp -QT -l 300m -i ~/.ssh/asperaweb_id_dsa.openssh anonftp@ftp.ncbi.nlm.nih.gov:{} {}" | |
| def prepare_url(srr_name, prefix): |