armanbilge

#!/usr/bin/env python

import sys

try:
    stream = open(sys.argv[1], 'r')
except:
    stream = sys.stdin

is_header = True

armanbilge

grep -oe "^[A-Za-z]*[0-9]*" COI.phy | nl -nln -v 0 | tail -n+2 > weevils.imap

armanbilge

#!/usr/bin/env perl
#
# isolate_target_tree.pl
# Usage: isolate_target_tree.pl <target_tree_id> <trees_file>

use strict;
use warnings;

my $target_tree = shift;

armanbilge

#!/usr/bin/env python
# Usage: diversity_index.py [percentage1 [percentage2 [...]]]

import sys

total = 0
for i in sys.argv[1:]:
    total += float(i) ** 2

print 1 - total

armanbilge

#!/usr/bin/env python

import sys

import numpy
import pylab
import random

lambd_A = random.random()
lambd_B = random.random()

armanbilge

#!/usr/bin/env osascript
-- HUJA: Harvard University Journal Access

set MY_USERNAME to "username"
set MY_PASSWORD to "password"
set PROXY_SERVER to ".ezp-prod1.hul.harvard.edu"
set loginAnyway to false

tell application "Safari" to set origURL to URL of front document as string

armanbilge

#!/usr/bin/env python

import sys

try:
    stream = open(sys.argv[1], 'r')
except:
    stream = sys.stdin

students = []

armanbilge

#!/usr/bin/bash
# outsmart-slurm.bash
# Outsmarts SLURM by automatically increasing the memory allocation for a failing job.
# Usage: bash outsmart-slurm.bash [SBATCH file]
# Download the latest revision at https://gist.github.com/armanbilge/6390764

if [ -z "$1" ]
then
    echo "*** ERROR *** No SBATCH file specified." 1>&2
    echo "Usage: bash outsmart-slurm.bash [SBATCH file]" 1>&2

armanbilge

grep fullhostname rstb20120196supp1.xml | sed -e 's/\(<[^<][^<]*>\)//g' | sort | uniq | sed -e 's/^[[:space:]]*//' > bat-species.txt

armanbilge

/**
 * Buzzer.java
 *
 * Buzzer
 */
package org.lexingtonma.lhs.nhb;

import java.awt.Color;
import java.awt.DefaultKeyboardFocusManager;
import java.awt.Font;