Alex Ford asford

## callback.cc
#include <stdio.h>
#include <execinfo.h>
#include <signal.h>
#include <stdlib.h>
#include <unistd.h>

void handler(int sig) {
  void *array[10];
  size_t size;

## rosetta_scripts_demo.ipynb

      
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                asford
                / rosetta_scripts_demo.ipynb
            
            
              Created
              May 6, 2015 21:47
            
              
                Demo rosetta scripts wrapper component.
              
          
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## README.md

      
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                asford
                / README.md
            
            
              Last active
              November 28, 2015 02:39
            
              
                RHEL 6.7 Linuxbrew Standalone
              
          
    On hyak build node

Adapted from https://github.com/Homebrew/linuxbrew/wiki/Standalone-Installation

Setup modern ruby

mkdir ~/opt
wget 'https://cache.ruby-lang.org/pub/ruby/2.2/ruby-2.2.3.tar.gz'
tar -zxof ruby-2.2.3.tar.gz
pushd ruby-2.2.3
configure --prefix=$HOME/opt
make -j 8 && make install


## T0797_BAKER_ROSETTA_SERVER.pdb
PFRMAT TS
TARGET T0797
MODEL     1
PARENT 4k1pD_101
ATOM      1  N   LYS     1      17.732   0.913   0.782  1.00 12.20           N
ATOM      2  CA  LYS     1      17.343   2.320   0.827  1.00 12.45           C
ATOM      3  C   LYS     1      15.822   2.469   0.762  1.00 11.12           C
ATOM      4  O   LYS     1      15.195   2.051  -0.213  1.00  8.23           O
ATOM      5  CB  LYS     1      18.027   3.070  -0.318  1.00 18.67           C
ATOM      6  CG  LYS     1      17.834   4.582  -0.378  1.00 18.67           C

## .gitignore

# Created by https://www.gitignore.io/api/c++,cmake

### C++ ###
# Prerequisites
*.d

# Compiled Object files
*.slo
*.lo

## pyspinner.py
import logging

import cppimport

import time
import threading

import numpy

spinner = cppimport.imp("spinner")

## numpy-numeric-metadata.ipynb

      
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                asford
                / numpy-numeric-metadata.ipynb
            
            
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              January 3, 2018 02:03
            
              
                numpy metadata-with-numeric dtypes and function composition, curried framework
              
          
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## gcloud_adaptive.py
#Adaptive subclass to support minimum cluster size and grouped scaling
#Cluster modification via gcloud calls
from __future__ import division

from math import ceil

import click
import subprocess
import distributed.deploy.adaptive as adaptive
import logging

## structure_search_manager_example.ipynb

      
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                asford
                / structure_search_manager_example.ipynb
            
            
              Created
              January 5, 2018 22:51
            
              
                Python interface example for structure search database.
              
          
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## 180104_barrel_closure_generation.ipynb

      
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                asford
                / 180104_barrel_closure_generation.ipynb
            
            
              Created
              January 6, 2018 07:04
            
              
                topology_mining/closure_generation/180104_barrel_closure_generation.ipynb
              
          
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	#include <stdio.h>
	#include <execinfo.h>
	#include <signal.h>
	#include <stdlib.h>
	#include <unistd.h>

	void handler(int sig) {
	void *array[10];
	size_t size;
	PFRMAT TS
	TARGET T0797
	MODEL 1
	PARENT 4k1pD_101
	ATOM 1 N LYS 1 17.732 0.913 0.782 1.00 12.20 N
	ATOM 2 CA LYS 1 17.343 2.320 0.827 1.00 12.45 C
	ATOM 3 C LYS 1 15.822 2.469 0.762 1.00 11.12 C
	ATOM 4 O LYS 1 15.195 2.051 -0.213 1.00 8.23 O
	ATOM 5 CB LYS 1 18.027 3.070 -0.318 1.00 18.67 C
	ATOM 6 CG LYS 1 17.834 4.582 -0.378 1.00 18.67 C

	# Created by https://www.gitignore.io/api/c++,cmake

	### C++ ###
	# Prerequisites
	*.d

	# Compiled Object files
	*.slo
	*.lo
	import logging

	import cppimport

	import time
	import threading

	import numpy

	spinner = cppimport.imp("spinner")
	#Adaptive subclass to support minimum cluster size and grouped scaling
	#Cluster modification via gcloud calls
	from __future__ import division

	from math import ceil

	import click
	import subprocess
	import distributed.deploy.adaptive as adaptive
	import logging