Setup a virtualenv in the /work filesystem to manage installed packages. You will install development dependencies into this environment, including updated versions of packages we've pre-installed onto the dig machine images.
mkdir ~/virtualenvs
Alex Ford asford
asford
/ 2942_perf_test.ipynb
Created
April 8, 2013 00:04
GPFS and SATA read buffer profiling for numpy pull request #2942.
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asford
/ cyborg.script.js
Last active
December 29, 2015 08:39
Code review, because brothers love sisters.
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| word_sub = { | |
| "cybernetic" : "cyber", | |
| "lived" : "living", | |
| "relations" : "relation", | |
| "changing" : "change", | |
| "changes" : "change", | |
| "womens" : "women", | |
| "women's" : "women", | |
| "movements" : "movement", | |
| "discovered" : "discover", |
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| require 'formula' | |
| class BoostNumpy < Formula | |
| homepage 'https://github.com/ndarray/' | |
| url 'git@github.com:asford/Boost.NumPy.git', :using => :git, :branch => 'master' | |
| version "0.0.1" | |
| depends_on 'scons' => :build | |
| depends_on 'boost' => 'with-python' |
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| // Property based selections | |
| { | |
| function SelectionPredicate(selectionname) | |
| { | |
| this.selectionname = selectionname; | |
| } | |
| function ClassPredicate(classname) |
asford
/ fragment_fitting.ipynb
Created
January 17, 2014 01:33
Sequence independant fragment fitting demo.
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asford
/ read_structures.py
Created
January 17, 2014 01:56
Reading structures from structure databases by id.
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| import interface_fragment_matching.structure_database | |
| db = interface_fragment_matching.structure_database.StructureDatabase("/work/fordas/test_sets/vall_store.h5") | |
| id_list = db.structures.read() | |
| for i in id_list["id"][:10]: | |
| id_residues = db.residues.read_where("id == i") | |
asford
/ gist:89d49168923d5dd343b7
Created
May 10, 2014 16:58
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| { | |
| "metadata": { | |
| "name": "", | |
| "signature": "sha256:aa80de3b5274221258ac3d45888e886c7895584b0774b2d985661159674e9f99" | |
| }, | |
| "nbformat": 3, | |
| "nbformat_minor": 0, | |
| "worksheets": [ | |
| { | |
| "cells": [ |
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