Using: https://github.com/trevorld/optparse
hello.R
#!/usr/bin/env Rscript
library(optparse)
#!/usr/bin/env ruby | |
# | |
# Compute Shannon Diversity Index from a CSV file | |
# Input has samples as columns, variables as rows | |
# | |
# | |
# (c) 2014 Austin G. Davis-Richardson | |
# LICENSE: MITv3 |
Using: https://github.com/trevorld/optparse
hello.R
#!/usr/bin/env Rscript
library(optparse)
I hereby claim:
To claim this, I am signing this object:
Classifier: RDP Naive Bayesian rRNA Classifier Version 2.6, Sep 2013 | |
Taxonomical Hierarchy: RDP 16S rRNA training set 9 | |
Query File: bacteroides-sequences.fasta | |
Submit Date: Wed Apr 23 16:53:26 EDT 2014 | |
Confidence threshold (for classification to unclassified_"Porphyromonadaceae" ONLY): 80% | |
Symbol +/- indicates predicted sequence orientation | |
821498;+;Bacteria;100%;"Bacteroidetes";100%;"Bacteroidia";100%;"Bacteroidales";100%;"Porphyromonadaceae";98%;Tannerella;65% | |
729992;+;Bacteria;100%;"Bacteroidetes";100%;"Bacteroidia";100%;"Bacteroidales";100%;"Porphyromonadaceae";100%;Dysgonomonas;62% | |
637013;+;Bacteria;100%;"Bacteroidetes";100%;"Bacteroidia";100%;"Bacteroidales";100%;"Porphyromonadaceae";100%;Dysgonomonas;60% |
var shell = require('mesh-viewer')(); | |
var vport = require('gl-viewport')(shell, { viewMode: 'ortho' }); | |
window.addEventListener('keydown', function (ev) { | |
if (String.fromCharCode(ev.which) === 'P') { | |
var mode = vport.viewMode === 'ortho' ? 'perspective' : 'ortho'; | |
vport.setViewMode(mode); | |
} | |
}); | |
#!/usr/bin/env Rscript | |
foo |
file_to_disk = './tmp/large_disk.vdi' | |
Vagrant::Config.run do |config| | |
config.vm.box = 'base' | |
config.vm.customize ['createhd', '--filename', file_to_disk, '--size', 500 * 1024] | |
config.vm.customize ['storageattach', :id, '--storagectl', 'SATA Controller', '--port', 1, '--device', 0, '--type', 'hdd', '--medium', file_to_disk] | |
end |
#!/usr/bin/env Rscript | |
library(phyloseq) | |
library(magrittr) | |
data(GlobalPatterns) | |
GlobalPatterns %>% | |
ordinate('NMDS', 'bray') %>% | |
plot_ordination(GlobalPatterns, ., type='split', color='Phylum', label='SampleType') |
#!/usr/bin/env ruby | |
require 'csv' | |
translation = CSV.read(ARGV[0]) | |
translation.map! { |x| [/#{x[0]}/, x[1]] } | |
d = File.read('/dev/stdin') |