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smoors/easybuild_test_report_14668_easybuilders_preasybuild-easyconfigs_20220611-UTC-12-06-29.md

Last active January 11, 2022 12:06
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EasyBuild test report for easybuilders/easybuild-easyconfigs PR(s) #14668
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easybuild_test_report_14668_easybuilders_preasybuild-easyconfigs_20220611-UTC-12-06-29.md

Test report for PR(s) easybuilders/easybuild-easyconfigs#14668

Test result

Build succeeded for 7 out of 7 (1 easyconfigs in total)

Overview of tested easyconfigs (in order)

  • SUCCESS groff-1.22.4-GCCcore-11.2.0.eb
  • SUCCESS expat-2.4.1-GCCcore-11.2.0.eb
  • SUCCESS ncurses-6.2-GCCcore-11.2.0.eb
  • SUCCESS libreadline-8.1-GCCcore-11.2.0.eb
  • SUCCESS DB-18.1.40-GCCcore-11.2.0.eb
  • SUCCESS Perl-5.34.0-GCCcore-11.2.0.eb
  • SUCCESS BWA-0.7.17-GCCcore-11.2.0.eb

Time info

  • start: Tue, 11 Jan 2022 11:42:32 +0000 (UTC)
  • end: Tue, 11 Jan 2022 12:06:29 +0000 (UTC)

EasyBuild info

  • easybuild-framework version: 4.5.2.dev0-r493a22d50aa4e4a04e4f0df95f89cd82f298e885
  • easybuild-easyblocks version: 4.5.2.dev0-ra45c73256259f181e4ca0d26588dd76a3f09f4ee
  • command line:
eb --from-pr=14668 -df --robot --upload-test-report --installpath=/tmp/vsc10009/ebinstall/14668 -l
  • full configuration (includes defaults):
--accept-eula-for=''
--accept-eula=''
--allow-loaded-modules='EasyBuild'
--buildpath='/tmp/vsc10009/build'
--check-ebroot-env-vars='warn'
--cleanup-builddir
--cleanup-easyconfigs
--cleanup-tmpdir
--color='auto'
--container-type='singularity'
--containerpath='/user/brussel/100/vsc10009/.local/easybuild/containers'
--debug
--default-opt-level='defaultopt'
--detect-loaded-modules='warn'
--disable-add-dummy-to-minimal-toolchains
--disable-add-system-to-minimal-toolchains
--disable-allow-modules-tool-mismatch
--disable-allow-use-as-root-and-accept-consequences
--disable-avail-cfgfile-constants
--disable-avail-easyconfig-constants
--disable-avail-easyconfig-licenses
--disable-avail-easyconfig-params
--disable-avail-easyconfig-templates
--disable-avail-hooks
--disable-avail-module-naming-schemes
--disable-avail-modules-tools
--disable-avail-repositories
--disable-check-conflicts
--disable-check-contrib
--disable-check-eb-deps
--disable-check-github
--disable-check-style
--disable-consider-archived-easyconfigs
--disable-container-build-image
--disable-containerize
--disable-copy-ec
--disable-debug-lmod
--disable-devel
--disable-dry-run
--disable-dry-run-short
--disable-dump-autopep8
--disable-dump-env-script
--disable-enforce-checksums
--disable-experimental
--disable-extended-dry-run
--disable-fetch
--disable-fix-deprecated-easyconfigs
--disable-group-writable-installdir
--disable-hidden
--disable-ignore-checksums
--disable-ignore-index
--disable-ignore-locks
--disable-ignore-osdeps
--disable-ignore-test-failure
--disable-info
--disable-insecure-download
--disable-install-github-token
--disable-install-latest-eb-release
--disable-job
--disable-last-log
--disable-list-toolchains
--disable-minimal-toolchains
--disable-missing-modules
--disable-module-depends-on
--disable-module-extensions
--disable-module-only
--disable-new-branch-github
--disable-new-pr
--disable-package
--disable-parallel-extensions-install
--disable-pretend
--disable-preview-pr
--disable-quiet
--disable-read-only-installdir
--disable-rebuild
--disable-recursive-module-unload
--disable-regtest
--disable-remove-ghost-install-dirs
--disable-rpath
--disable-sanity-check-only
--disable-sequential
--disable-set-default-module
--disable-set-gid-bit
--disable-show-config
--disable-show-default-configfiles
--disable-show-default-moduleclasses
--disable-show-ec
--disable-show-full-config
--disable-show-system-info
--disable-skip
--disable-skip-extensions
--disable-skip-test-cases
--disable-skip-test-step
--disable-sticky-bit
--disable-terse
--disable-trace
--disable-try-ignore-versionsuffixes
--disable-try-update-deps
--disable-unit-testing-mode
--disable-update-modules-tool-cache
--disable-use-existing-modules
--disable-verify-easyconfig-filenames
--env-for-shebang='/usr/bin/env'
--envvars-user-modules='HOME'
--extended-dry-run-ignore-errors
--fixed-installdir-naming-scheme
--force
--from-pr='14668'
--generate-devel-module
--git-working-dirs-path='/data/brussel/100/vsc10009'
--github-user='smoors'
--ignore-dirs='.git,.svn'
--include-easyblocks-from-pr=''
--include-easyblocks=''
--include-module-naming-schemes=''
--include-toolchains=''
--index-max-age='604800'
--installpath='/tmp/vsc10009/ebinstall/14668'
--job-backend='GC3Pie'
--job-max-jobs='0'
--job-max-walltime='24'
--job-output-dir='/theia/data/brussel/100/vsc10009/easynew/test'
--job-polling-interval='30.0'
--lib-lib64-symlink
--lib64-fallback-sanity-check
--lib64-lib-symlink
--local-var-naming-check='warn'
--logfile-format='easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'
--logtostdout
--map-toolchains
--max-fail-ratio-adjust-permissions='0.5'
--minimal-build-env='CC:gcc,CXX:g++'
--module-naming-scheme='EasyBuildMNS'
--module-syntax='Lua'
--moduleclasses='base,astro,bio,cae,chem,compiler,data,debugger,devel,geo,ide,lang,lib,math,mpi,numlib,perf,quantum,phys,system,toolchain,tools,vis'
--modules-tool-version-check
--modules-tool='Lmod'
--mpi-tests
--output-format='txt'
--output-style='auto'
--package-naming-scheme='EasyBuildPNS'
--package-release='1'
--package-tool-options=''
--package-tool='fpm'
--package-type='rpm'
--packagepath='/user/brussel/100/vsc10009/.local/easybuild/packages'
--pr-target-account='easybuilders'
--pr-target-branch='develop'
--pre-create-installdir
--repository='FileRepository'
--repositorypath='/user/brussel/100/vsc10009/.local/easybuild/ebfiles_repo'
--robot-paths=''
--robot='/data/brussel/100/vsc10009/easybuild-easyconfigs/easybuild/easyconfigs'
--show-progress-bar
--sourcepath='/scratch/brussel/100/vsc10009/sources:/apps/brussel/sources:/apps/gent/source'
--strict='warn'
--subdir-modules='modules'
--subdir-software='software'
--suffix-modules-path='all'
--test-report-env-filter='^SSH|USER|HOSTNAME|UID|.*COOKIE.*'
--upload-test-report
--use-ccache='False'
--use-f90cache='False'
--wait-on-lock-interval='60'
--wait-on-lock-limit='0'

System info

  • core count: 4
  • cpu arch: x86_64
  • cpu arch name: skylake_avx512
  • cpu model: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz
  • cpu speed: 3700.0
  • cpu vendor: Intel
  • gcc version: Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/lto-wrapper; Target: x86_64-redhat-linux; Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux; Thread model: posix; gcc version 4.8.5 20150623 (Red Hat 4.8.5-44) (GCC) ;
  • glibc version: 2.17
  • hostname: node366.hydra.os
  • os name: centos linux
  • os type: Linux
  • os version: 7.9.2009
  • platform name: x86_64-unknown-linux
  • python version: 2.7.5 (default, Nov 16 2020, 22:23:17) ; [GCC 4.8.5 20150623 (Red Hat 4.8.5-44)]
  • system gcc path: /bin/gcc
  • system python path: /bin/python
  • total memory: 191891

List of loaded modules

  • (none)

Environment

BACKUP_MODULEPATH = /apps/brussel/CO7/skylake-ib/modules/2021b/all:/apps/brussel/CO7/skylake-ib/modules/2021a/all:/apps/brussel/CO7/skylake-ib/modules/2020b/all:/apps/brussel/CO7/skylake-ib/modules/2020a/all:/apps/brussel/CO7/skylake-ib/modules/2019b/all:/apps/brussel/CO7/skylake-ib/modules/2019a/all:/apps/brussel/CO7/skylake-ib/modules/2018b/all:/apps/brussel/CO7/skylake-ib/modules/2018a/all:/apps/brussel/CO7/skylake-ib/modules/2017b/all:/apps/brussel/CO7/skylake-ib/modules/2017a/all:/apps/brussel/CO7/skylake-ib/modules/2016b/all::/etc/modulefiles/vsc
BASH_FUNC_ml() = () {  eval $($LMOD_DIR/ml_cmd "$@")
}
BASH_FUNC_mlusedir() = () {  if [ $# -eq 0 ]; then
 echo "specify 1 or more directories in $VSC_SCRATCH/ebtest/ to be added to MODULEPATH";
 else
 if [ "$1" == "reset" ]; then
 if [ ! -z "$BACKUP_MODULEPATH" ]; then
 export MODULEPATH=$BACKUP_MODULEPATH;
 else
 echo BACKUP_MODULEPATH not defined;
 fi;
 else
 for i in "$@";
 do
 extrapath=$VSC_SCRATCH/ebtest/$i/modules/all;
 if [ ! -d "$extrapath" ]; then
 echo "warning: $extrapath not present";
 fi;
 MODULEPATH=$extrapath:$MODULEPATH;
 done;
 export MODULEPATH;
 fi;
 fi;
 echo $MODULEPATH | tr ":" "\n"
}
BASH_FUNC_mlusenewdir() = () {  if [ $# -eq 0 ]; then
 echo "specify 1 or more directories in $VSC_SCRATCH_VO_USER/ebtest/ to be added to MODULEPATH";
 else
 if [ "$1" == "reset" ]; then
 if [ ! -z "$BACKUP_MODULEPATH" ]; then
 export MODULEPATH=$BACKUP_MODULEPATH;
 else
 echo BACKUP_MODULEPATH not defined;
 fi;
 else
 for i in "$@";
 do
 extrapath=$VSC_SCRATCH_VO_USER/ebtest/$i/modules/all;
 if [ ! -d "$extrapath" ]; then
 echo "warning: $extrapath not present";
 fi;
 MODULEPATH=$extrapath:$MODULEPATH;
 done;
 export MODULEPATH;
 fi;
 fi;
 echo $MODULEPATH | tr ":" "\n"
}
BASH_FUNC_module() = () {  eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh)
}
CUDA_DEVICE_ORDER = PCI_BUS_ID
EASYBUILD_BUILDPATH = /tmp/vsc10009/build
EASYBUILD_GIT_WORKING_DIRS_PATH = /data/brussel/100/vsc10009
EASYBUILD_SOURCEPATH = /scratch/brussel/100/vsc10009/sources:/apps/brussel/sources:/apps/gent/source
EASYBUILD_TEST_REPORT_ENV_FILTER = ^SSH|USER|HOSTNAME|UID|.*COOKIE.*
EB_SCRIPT_PATH = /data/brussel/100/vsc10009/easybuild-framework/eb
ENVIRONMENT = BATCH
FANCYLOGGER_IGNORE_MPI4PY = 1
GIT_PS1_SHOWDIRTYSTATE = 0
HISTCONTROL = ignoredups
HISTFILESIZE = 100000
HISTSIZE = 100000
HOME = /user/brussel/100/vsc10009
JOBCLI_IGNORE_SUBMITFILTER = 1
LANG = en_US.UTF-8
LESSOPEN = ||/usr/bin/lesspipe.sh %s
LMOD_CMD = /usr/share/lmod/lmod/libexec/lmod
LMOD_DIR = /usr/share/lmod/lmod/libexec
LMOD_PKG = /usr/share/lmod/lmod
LMOD_ROOT = /usr/share/lmod
LMOD_SETTARG_FULL_SUPPORT = no
LMOD_SYSTEM_NAME = hydra-skylake-ib
LMOD_VERSION = 8.5.7
LOGNAME = vsc10009
MAIL = /var/spool/mail/vsc10009
MANPATH = :
MODULEPATH = /apps/brussel/CO7/skylake-ib/modules/2021b/all:/apps/brussel/CO7/skylake-ib/modules/2021a/all:/apps/brussel/CO7/skylake-ib/modules/2020b/all:/apps/brussel/CO7/skylake-ib/modules/2020a/all:/apps/brussel/CO7/skylake-ib/modules/2019b/all:/apps/brussel/CO7/skylake-ib/modules/2019a/all:/apps/brussel/CO7/skylake-ib/modules/2018b/all:/apps/brussel/CO7/skylake-ib/modules/2018a/all:/apps/brussel/CO7/skylake-ib/modules/2017b/all:/apps/brussel/CO7/skylake-ib/modules/2017a/all:/apps/brussel/CO7/skylake-ib/modules/2016b/all::/etc/modulefiles/vsc
MODULESHOME = /usr/share/lmod/lmod
PATH = /bin:/sbin
PBS_NODEFILE = /tmp/sdsTjoqTVb
PBS_QUEUE = skylake,skylake_mpi
PWD = /theia/data/brussel/100/vsc10009/easynew/test
PYTHONOPTIMIZE = 1
PYTHONPATH = /data/brussel/100/vsc10009/easybuild-framework:/data/brussel/100/vsc10009/easybuild-easyblocks:/data/brussel/100/vsc10009/easybuild-easyconfigs:/user/brussel/100/vsc10009/.local/lib/python
SHELL = /bin/bash
SHLVL = 3
SLURMD_NODENAME = node366
SLURM_CLUSTERS = hydra
SLURM_CLUSTER_NAME = hydra
SLURM_CONF = /var/spool/slurm/slurmd/conf-cache/slurm.conf
SLURM_CPUS_ON_NODE = 4
SLURM_EXPORT_ENV = HOME,USER,TERM,PATH=/bin:/sbin
SLURM_GPUS = 0
SLURM_GTIDS = 0
SLURM_JOBID = 6135860
SLURM_JOB_ACCOUNT = bvo00005
SLURM_JOB_CPUS_PER_NODE = 4
SLURM_JOB_GID = 2510009
SLURM_JOB_ID = 6135860
SLURM_JOB_NAME = 14668
SLURM_JOB_NODELIST = node366
SLURM_JOB_NUM_NODES = 1
SLURM_JOB_PARTITION = skylake_mpi
SLURM_JOB_QOS = normal
SLURM_LOCALID = 0
SLURM_MEM_PER_CPU = 4096
SLURM_NNODES = 1
SLURM_NODEID = 0
SLURM_NODELIST = node366
SLURM_NODE_ALIASES = (null)
SLURM_NPROCS = 4
SLURM_NTASKS = 4
SLURM_PMIX_DIRECT_CONN = true
SLURM_PMIX_DIRECT_CONN_EARLY = true
SLURM_PMIX_DIRECT_CONN_UCX = true
SLURM_PRIO_PROCESS = 0
SLURM_PROCID = 0
SLURM_SUBMIT_DIR = /theia/data/brussel/100/vsc10009/easynew/test
SLURM_SUBMIT_HOST = login1.cerberus.os
SLURM_TASKS_PER_NODE = 4
SLURM_TASK_PID = 236855
SLURM_TOPOLOGY_ADDR = skylake_swib3.node366
SLURM_TOPOLOGY_ADDR_PATTERN = switch.node
SLURM_WORKING_CLUSTER = hydra:master02.hydra.os:6817:9472:109
TERM = screen
TMPDIR = /tmp
UCX_TLS = dc,sm,self
VSCPROFILELOADED = 1
VSC_ARCH_LOCAL = skylake
VSC_ARCH_SUFFIX = -ib
VSC_DATA = /data/brussel/100/vsc10009
VSC_DATA_VO = /data/brussel/vo/000/bvo00005
VSC_DATA_VO_BRUSSEL = /data/brussel/vo/000/bvo00005
VSC_DEFAULT_CLUSTER_MODULE = hydra
VSC_HOME = /user/brussel/100/vsc10009
VSC_INSTITUTE = brussel
VSC_INSTITUTE_CLUSTER = hydra
VSC_INSTITUTE_LOCAL = brussel
VSC_OS_LOCAL = CO7
VSC_SCRATCH = /scratch/brussel/100/vsc10009
VSC_SCRATCH_CLUSTER = /local
VSC_SCRATCH_NODE = /local
VSC_SCRATCH_SITE = /scratch/brussel/100/vsc10009
VSC_SCRATCH_THEIA = /theia/scratch/brussel/100/vsc10009
VSC_SCRATCH_THEIA_VO = /theia/scratch/brussel/vo/000/bvo00005
VSC_SCRATCH_VO = /scratch/brussel/vo/000/bvo00005
VSC_VO = bvo00005
VSC_VO_BRUSSEL = bvo00005
WORKDIR = /scratch/brussel/100/vsc10009
XDG_RUNTIME_DIR = /run/user/2510009
XDG_SESSION_ID = c17450
_ = /bin/python
aaaa = aaaa
bbbb = bbbb
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