Created
August 28, 2022 14:51
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Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/coreneuron/-/pipelines/71526 (:white_check_mark:) running on GitHub PR BlueBrain/CoreNeuron#795.
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| [0KRunning with gitlab-runner 15.1.0 (76984217)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1661693908:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1661693908:resolve_secrets [0Ksection_start:1661693908:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.1.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3868228804, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 71526, build ref 567bd21cc895460c3e176d71d24dd82a549835a9, job ID 338710 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J338710_PROD_P112_CP2_C2 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 749533 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J338710_PROD_P112_CP2_C2 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --ntasks=2 --jobid=749533 --cpus-per-task=8 --mem=76G | |
| section_end:1661693911:prepare_executor [0Ksection_start:1661693911:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i7n22 via bbpv1.epfl.ch... | |
| section_end:1661693914:prepare_script [0Ksection_start:1661693914:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1661693914:get_sources [0Ksection_start:1661693914:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:coreneuron:mod2c:nvhpc:acc:debug:unified-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=62204 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1661693915:restore_cache [0Ksection_start:1661693915:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (338704)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=62551 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=338704 responseStatus[0;m=200 OK token[0;m=mPqx_RAk | |
| section_end:1661693916:download_artifacts [0Ksection_start:1661693916:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338710/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338710/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338710/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338710/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338710/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526/J338710_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron%nvhpc +caliper+gpu~legacy-unit~nmodl+openmp~shared+tests+unified build_type=Debug ^hpe-mpi%gcc ^caliper%gcc+cuda cuda_arch=70 | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be cftsmtwawgvxmq75oevgdxdn6tjvkaer | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/749533/ccache | |
| Primary config: /nvme/bbpcihpcproj12/749533/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Sun Aug 28 15:39:00 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.03 / 0.51 (5.68 %) | |
| Files: 408 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'cftsmtwawgvxmq75oevgdxdn6tjvkaer' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron%nvhpc+caliper+gpu~legacy-unit~nmodl+openmp~shared+tests+unified build_type=Debug | |
| - ^caliper%gcc+cuda cuda_arch=70 | |
| - ^hpe-mpi%gcc | |
| Concretized | |
| -------------------------------- | |
| - cftsmtw coreneuron@develop%nvhpc@22.3+caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl+openmp~profile+report~shared~sympy~sympyopt+tests+unified build_type=Debug arch=linux-rhel7-skylake | |
| - 6s6wcfe ^bison@3.8.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] fnw44jf ^boost@1.79.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] pfqy3p5 ^caliper@2.7.0%gcc@11.2.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi+sampler+shared~sosflow build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake | |
| [^] at3kmf2 ^adiak@0.2.1%gcc@11.2.0~ipo+mpi+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 2qmvlfy ^cmake@3.21.4%gcc@11.2.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [^] hyunzkn ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] wu42aul ^cuda@11.6.1%gcc@11.2.0~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] p6adpyi ^elfutils@0.186%gcc@11.2.0~bzip2~debuginfod+nls~xz arch=linux-rhel7-skylake | |
| [^] iu2b5hx ^gettext@0.21%gcc@11.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake | |
| [^] 3rmq3zx ^bzip2@1.0.8%gcc@11.2.0~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] hxxlexb ^libiconv@1.16%gcc@11.2.0 libs=shared,static arch=linux-rhel7-skylake | |
| [^] dnxqn2k ^libxml2@2.9.12%gcc@11.2.0~python arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] jzpqn5y ^xz@5.2.5%gcc@11.2.0~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] evtnqzd ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ams67cx ^ncurses@6.2%gcc@11.2.0~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] ir7xtbl ^tar@1.28%gcc@11.2.0 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| - bmpk6ez ^m4@1.4.16%gcc@11.2.0+sigsegv arch=linux-rhel7-skylake | |
| [^] gc2ivgg ^libunwind@1.5.0%gcc@11.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib components=none libs=shared,static arch=linux-rhel7-skylake | |
| [^] vcit7s5 ^papi@6.0.0.1%gcc@11.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools amdgpu_target=none arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| - ajxdymq ^flex@2.6.3%nvhpc@22.3+lex~nls arch=linux-rhel7-skylake | |
| [^] lbajih4 ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] r74vcyb ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7lotjqk ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| - cp3ofsp ^ninja@1.10.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-6s6wcfeanp2mkdib4c3n3ivkcuosopgm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.79.0-zoxhho (external boost-1.79.0-fnw44jfbxyivagsnavjnk6zdaghmffbt) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-2qmvlfyylrv3t5ankluyr5cqey2nlfzd) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| ==> cuda@11.6.1 : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-wu42aulcivrayjquerqpqvvjeadgosp2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-3rmq3zxuntsiphthnvty6gtydbmbkwr5) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libiconv-1.16-hxxlex | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/xz-5.2.5-jzpqn5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-ams67cxbq5vc7wiay2ndr2ksce2igbfw) | |
| [+] /usr (external tar-1.28-ir7xtblauhq3vtkpjrl7ou3nzevcsi3u) | |
| [+] /usr (external m4-1.4.16-bmpk6ezkxo3553jsm5thxh7ygtrom3dn) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libunwind-1.5.0-gc2ivg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/papi-6.0.0.1-vcit7s | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-ajxdymqhnzqgeuhvk5nu5zfymzq35n6i) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-cp3ofspgkdqaqih5vrhotmdwvkozfswp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/fmt-8.1.1-7lotjq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/adiak-0.2.1-at3kmf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libxml2-2.9.12-dnxqn2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-r74vcy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/gettext-0.21-iu2b5h | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1.1-lbajih | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/elfutils-0.186-p6adpy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/caliper-2.7.0-pfqy3p | |
| ==> Installing coreneuron-develop-cftsmtwawgvxmq75oevgdxdn6tjvkaer | |
| ==> No binary for coreneuron-develop-cftsmtwawgvxmq75oevgdxdn6tjvkaer found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526, but it is owned by 0 | |
| ==> No patches needed for coreneuron | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| ==> coreneuron: Successfully installed coreneuron-develop-cftsmtwawgvxmq75oevgdxdn6tjvkaer | |
| Fetch: 4.13s. Build: 1m 6.59s. Total: 1m 10.72s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/software/install_nvhpc-22.3-skylake/coreneuron-develop-cftsmt | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/749533/ccache | |
| Primary config: /nvme/bbpcihpcproj12/749533/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Sun Aug 28 15:41:03 2022 | |
| Hits: 107 / 116 (92.24 %) | |
| Direct: 89 / 116 (76.72 %) | |
| Preprocessed: 18 / 27 (66.67 %) | |
| Misses: 9 | |
| Direct: 27 | |
| Preprocessed: 9 | |
| Uncacheable: 21 | |
| Primary storage: | |
| Hits: 196 / 232 (84.48 %) | |
| Misses: 36 | |
| Cache size (GB): 0.03 / 0.51 (5.74 %) | |
| Files: 426 | |
| Uncacheable: | |
| Called for linking: 18 | |
| No input file: 3 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1661694064:step_script [0Ksection_start:1661694064:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:coreneuron:mod2c:nvhpc:acc:debug:unified-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=69975 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Amod2c%3Anvhpc%3Aacc%3Adebug%3Aunified-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1661694066:archive_cache [0Ksection_start:1661694066:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=70106 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=338710 responseStatus[0;m=201 Created token[0;m=mPqx_RAk | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=70172 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=338710 responseStatus[0;m=201 Created token[0;m=mPqx_RAk | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=70255 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=338710 responseStatus[0;m=201 Created token[0;m=mPqx_RAk | |
| section_end:1661694067:upload_artifacts_on_success [0Ksection_start:1661694067:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1661694068:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.1.0 (76984217)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1661694147:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1661694147:resolve_secrets [0Ksection_start:1661694147:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.1.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1901208440, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 71526, build ref 567bd21cc895460c3e176d71d24dd82a549835a9, job ID 338708 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J338708_PROD_P112_CP0_C0 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 749542 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J338708_PROD_P112_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --ntasks=2 --jobid=749542 --cpus-per-task=8 --mem=76G | |
| section_end:1661694148:prepare_executor [0Ksection_start:1661694148:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i7n22 via bbpv1.epfl.ch... | |
| section_end:1661694150:prepare_script [0Ksection_start:1661694150:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1661694151:get_sources [0Ksection_start:1661694151:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:coreneuron:nmodl:intel:debug:legacy-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=73431 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1661694152:restore_cache [0Ksection_start:1661694152:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:nmodl (338706)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=73499 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=338706 responseStatus[0;m=200 OK token[0;m=FToDGB56 | |
| section_end:1661694153:download_artifacts [0Ksection_start:1661694153:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338708/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338708/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338708/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338708/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338708/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526/J338708_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron%intel +caliper~gpu~legacy-unit+nmodl~openmp~shared~sympy+tests~unified build_type=Debug ^hpe-mpi%gcc ^caliper%gcc+cuda cuda_arch=70 ^/4dzxcpsuksxgtuoesheax4sf76wrhkqb | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be jfrkyskialbeoksqkfbq3l42w7o76waj | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/749542/ccache | |
| Primary config: /nvme/bbpcihpcproj12/749542/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Sun Aug 28 15:42:57 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.05 / 0.51 (9.73 %) | |
| Files: 608 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'jfrkyskialbeoksqkfbq3l42w7o76waj' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron%intel+caliper~gpu~legacy-unit+nmodl~openmp~shared~sympy+tests~unified build_type=Debug | |
| - ^caliper%gcc+cuda cuda_arch=70 | |
| - ^hpe-mpi%gcc | |
| [+] ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - jfrkysk coreneuron@develop%intel@2021.4.0+caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report~shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| - dwdch6b ^bison@3.8.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] rdrurry ^boost@1.79.0%intel@2021.4.0+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] pfqy3p5 ^caliper@2.7.0%gcc@11.2.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi+sampler+shared~sosflow build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake | |
| [^] at3kmf2 ^adiak@0.2.1%gcc@11.2.0~ipo+mpi+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 2qmvlfy ^cmake@3.21.4%gcc@11.2.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [^] hyunzkn ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] wu42aul ^cuda@11.6.1%gcc@11.2.0~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] p6adpyi ^elfutils@0.186%gcc@11.2.0~bzip2~debuginfod+nls~xz arch=linux-rhel7-skylake | |
| [^] iu2b5hx ^gettext@0.21%gcc@11.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake | |
| [^] 3rmq3zx ^bzip2@1.0.8%gcc@11.2.0~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] hxxlexb ^libiconv@1.16%gcc@11.2.0 libs=shared,static arch=linux-rhel7-skylake | |
| [^] dnxqn2k ^libxml2@2.9.12%gcc@11.2.0~python arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] jzpqn5y ^xz@5.2.5%gcc@11.2.0~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] evtnqzd ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ams67cx ^ncurses@6.2%gcc@11.2.0~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] ir7xtbl ^tar@1.28%gcc@11.2.0 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| - bmpk6ez ^m4@1.4.16%gcc@11.2.0+sigsegv arch=linux-rhel7-skylake | |
| [^] gc2ivgg ^libunwind@1.5.0%gcc@11.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib components=none libs=shared,static arch=linux-rhel7-skylake | |
| [^] vcit7s5 ^papi@6.0.0.1%gcc@11.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools amdgpu_target=none arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| - s4ueg72 ^flex@2.6.3%intel@2021.4.0+lex~nls arch=linux-rhel7-skylake | |
| [^] lbajih4 ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] r74vcyb ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7lotjqk ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| - 6ggc5yr ^ninja@1.10.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [+] 4dzxcps ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] atktt2p ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] e5qqxxq ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] jjl6cjc ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] z5kzef6 ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vt2or7v ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-dwdch6bmdeclr2novthsywtrryotawwz) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.79.0-zoxhho (external boost-1.79.0-rdrurryqe5eahijb4xf6mbqfryg7ezod) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-2qmvlfyylrv3t5ankluyr5cqey2nlfzd) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| ==> cuda@11.6.1 : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-wu42aulcivrayjquerqpqvvjeadgosp2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-3rmq3zxuntsiphthnvty6gtydbmbkwr5) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libiconv-1.16-hxxlex | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/xz-5.2.5-jzpqn5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-ams67cxbq5vc7wiay2ndr2ksce2igbfw) | |
| [+] /usr (external tar-1.28-ir7xtblauhq3vtkpjrl7ou3nzevcsi3u) | |
| [+] /usr (external m4-1.4.16-bmpk6ezkxo3553jsm5thxh7ygtrom3dn) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libunwind-1.5.0-gc2ivg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/papi-6.0.0.1-vcit7s | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-s4ueg72j7l6vkdyvfxj2tweo7v7s3otx) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/fmt-8.1.1-7lotjq | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-6ggc5yre7qddwxdjmn7sfptpdoiy4dtp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/catch2-2.13.8-atktt2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/cli11-2.1.1-e5qqxx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/nlohmann-json-3.10.4-jjl6cj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/adiak-0.2.1-at3kmf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libxml2-2.9.12-dnxqn2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pybind11-2.9.1-z5kzef | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-r74vcy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/gettext-0.21-iu2b5h | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.9-vt2or7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1.1-lbajih | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/elfutils-0.186-p6adpy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/caliper-2.7.0-pfqy3p | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/software/install_gcc-11.2.0-skylake/nmodl-develop-4dzxcp | |
| ==> Installing coreneuron-develop-jfrkyskialbeoksqkfbq3l42w7o76waj | |
| ==> No binary for coreneuron-develop-jfrkyskialbeoksqkfbq3l42w7o76waj found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526, but it is owned by 0 | |
| ==> No patches needed for coreneuron | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| ==> coreneuron: Successfully installed coreneuron-develop-jfrkyskialbeoksqkfbq3l42w7o76waj | |
| Fetch: 4.90s. Build: 50.07s. Total: 54.97s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/software/install_intel-2021.4.0-skylake/coreneuron-develop-jfrkys | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/749542/ccache | |
| Primary config: /nvme/bbpcihpcproj12/749542/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Sun Aug 28 15:44:46 2022 | |
| Hits: 86 / 96 (89.58 %) | |
| Direct: 77 / 96 (80.21 %) | |
| Preprocessed: 9 / 19 (47.37 %) | |
| Misses: 10 | |
| Direct: 19 | |
| Preprocessed: 10 | |
| Uncacheable: 20 | |
| Primary storage: | |
| Hits: 163 / 192 (84.90 %) | |
| Misses: 29 | |
| Cache size (GB): 0.05 / 0.51 (9.78 %) | |
| Files: 637 | |
| Uncacheable: | |
| Called for linking: 17 | |
| No input file: 3 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1661694289:step_script [0Ksection_start:1661694289:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:coreneuron:nmodl:intel:debug:legacy-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=81322 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Anmodl%3Aintel%3Adebug%3Alegacy-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1661694292:archive_cache [0Ksection_start:1661694292:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=81393 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=338708 responseStatus[0;m=201 Created token[0;m=FToDGB56 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=81435 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=338708 responseStatus[0;m=201 Created token[0;m=FToDGB56 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=81475 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=338708 responseStatus[0;m=201 Created token[0;m=FToDGB56 | |
| section_end:1661694294:upload_artifacts_on_success [0Ksection_start:1661694294:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1661694294:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.1.0 (76984217)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1661694147:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1661694147:resolve_secrets [0Ksection_start:1661694147:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.1.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2374776915, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 71526, build ref 567bd21cc895460c3e176d71d24dd82a549835a9, job ID 338712 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J338712_PROD_P112_CP6_C7 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 749544 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J338712_PROD_P112_CP6_C7 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --ntasks=2 --jobid=749544 --cpus-per-task=8 --mem=76G | |
| section_end:1661694151:prepare_executor [0Ksection_start:1661694151:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i6n29 via bbpv1.epfl.ch... | |
| section_end:1661694156:prepare_script [0Ksection_start:1661694156:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1661694157:get_sources [0Ksection_start:1661694157:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:coreneuron:nmodl:nvhpc:acc:debug:legacy-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=235457 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1661694161:restore_cache [0Ksection_start:1661694161:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:nmodl (338706)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=236789 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=338706 responseStatus[0;m=200 OK token[0;m=sQbq2PTb | |
| section_end:1661694161:download_artifacts [0Ksection_start:1661694161:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338712/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338712/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338712/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338712/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338712/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526/J338712_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron%nvhpc +caliper+gpu~legacy-unit+nmodl~openmp~shared~sympy+tests~unified build_type=Debug ^hpe-mpi%gcc ^caliper%gcc+cuda cuda_arch=70 ^/4dzxcpsuksxgtuoesheax4sf76wrhkqb | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be js5laijjlbd563352whng5sdc5aazwvb | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/749544/ccache | |
| Primary config: /nvme/bbpcihpcproj12/749544/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Sun Aug 28 15:43:07 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.28 / 0.51 (54.01 %) | |
| Files: 849 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'js5laijjlbd563352whng5sdc5aazwvb' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron%nvhpc+caliper+gpu~legacy-unit+nmodl~openmp~shared~sympy+tests~unified build_type=Debug | |
| - ^caliper%gcc+cuda cuda_arch=70 | |
| - ^hpe-mpi%gcc | |
| [+] ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - js5laij coreneuron@develop%nvhpc@22.3+caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report~shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| - 6s6wcfe ^bison@3.8.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] fnw44jf ^boost@1.79.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] pfqy3p5 ^caliper@2.7.0%gcc@11.2.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi+sampler+shared~sosflow build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake | |
| [^] at3kmf2 ^adiak@0.2.1%gcc@11.2.0~ipo+mpi+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 2qmvlfy ^cmake@3.21.4%gcc@11.2.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [^] hyunzkn ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] wu42aul ^cuda@11.6.1%gcc@11.2.0~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] p6adpyi ^elfutils@0.186%gcc@11.2.0~bzip2~debuginfod+nls~xz arch=linux-rhel7-skylake | |
| [^] iu2b5hx ^gettext@0.21%gcc@11.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake | |
| [^] 3rmq3zx ^bzip2@1.0.8%gcc@11.2.0~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] hxxlexb ^libiconv@1.16%gcc@11.2.0 libs=shared,static arch=linux-rhel7-skylake | |
| [^] dnxqn2k ^libxml2@2.9.12%gcc@11.2.0~python arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] jzpqn5y ^xz@5.2.5%gcc@11.2.0~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] evtnqzd ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ams67cx ^ncurses@6.2%gcc@11.2.0~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] ir7xtbl ^tar@1.28%gcc@11.2.0 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| - bmpk6ez ^m4@1.4.16%gcc@11.2.0+sigsegv arch=linux-rhel7-skylake | |
| [^] gc2ivgg ^libunwind@1.5.0%gcc@11.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib components=none libs=shared,static arch=linux-rhel7-skylake | |
| [^] vcit7s5 ^papi@6.0.0.1%gcc@11.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools amdgpu_target=none arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| - ajxdymq ^flex@2.6.3%nvhpc@22.3+lex~nls arch=linux-rhel7-skylake | |
| [^] lbajih4 ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] r74vcyb ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7lotjqk ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| - cp3ofsp ^ninja@1.10.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [+] 4dzxcps ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] atktt2p ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] e5qqxxq ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] jjl6cjc ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] z5kzef6 ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vt2or7v ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-6s6wcfeanp2mkdib4c3n3ivkcuosopgm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.79.0-zoxhho (external boost-1.79.0-fnw44jfbxyivagsnavjnk6zdaghmffbt) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-2qmvlfyylrv3t5ankluyr5cqey2nlfzd) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| ==> cuda@11.6.1 : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-wu42aulcivrayjquerqpqvvjeadgosp2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-3rmq3zxuntsiphthnvty6gtydbmbkwr5) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libiconv-1.16-hxxlex | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/xz-5.2.5-jzpqn5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-ams67cxbq5vc7wiay2ndr2ksce2igbfw) | |
| [+] /usr (external tar-1.28-ir7xtblauhq3vtkpjrl7ou3nzevcsi3u) | |
| [+] /usr (external m4-1.4.16-bmpk6ezkxo3553jsm5thxh7ygtrom3dn) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libunwind-1.5.0-gc2ivg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/papi-6.0.0.1-vcit7s | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-ajxdymqhnzqgeuhvk5nu5zfymzq35n6i) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/fmt-8.1.1-7lotjq | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-cp3ofspgkdqaqih5vrhotmdwvkozfswp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/catch2-2.13.8-atktt2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/cli11-2.1.1-e5qqxx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/nlohmann-json-3.10.4-jjl6cj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/adiak-0.2.1-at3kmf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libxml2-2.9.12-dnxqn2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pybind11-2.9.1-z5kzef | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-r74vcy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/gettext-0.21-iu2b5h | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.9-vt2or7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1.1-lbajih | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/elfutils-0.186-p6adpy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/caliper-2.7.0-pfqy3p | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/software/install_gcc-11.2.0-skylake/nmodl-develop-4dzxcp | |
| ==> Installing coreneuron-develop-js5laijjlbd563352whng5sdc5aazwvb | |
| ==> No binary for coreneuron-develop-js5laijjlbd563352whng5sdc5aazwvb found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526, but it is owned by 0 | |
| ==> No patches needed for coreneuron | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| ==> coreneuron: Successfully installed coreneuron-develop-js5laijjlbd563352whng5sdc5aazwvb | |
| Fetch: 4.60s. Build: 4m 32.26s. Total: 4m 36.86s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/software/install_nvhpc-22.3-skylake/coreneuron-develop-js5lai | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/749544/ccache | |
| Primary config: /nvme/bbpcihpcproj12/749544/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Sun Aug 28 15:48:41 2022 | |
| Hits: 86 / 95 (90.53 %) | |
| Direct: 77 / 95 (81.05 %) | |
| Preprocessed: 9 / 18 (50.00 %) | |
| Misses: 9 | |
| Direct: 18 | |
| Preprocessed: 9 | |
| Uncacheable: 18 | |
| Primary storage: | |
| Hits: 163 / 190 (85.79 %) | |
| Misses: 27 | |
| Cache size (GB): 0.28 / 0.51 (54.84 %) | |
| Files: 876 | |
| Uncacheable: | |
| Called for linking: 15 | |
| No input file: 3 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1661694523:step_script [0Ksection_start:1661694523:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:coreneuron:nmodl:nvhpc:acc:debug:legacy-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=248753 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Anmodl%3Anvhpc%3Aacc%3Adebug%3Alegacy-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1661694536:archive_cache [0Ksection_start:1661694536:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=248907 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=338712 responseStatus[0;m=201 Created token[0;m=sQbq2PTb | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=248956 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=338712 responseStatus[0;m=201 Created token[0;m=sQbq2PTb | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=249005 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=338712 responseStatus[0;m=201 Created token[0;m=sQbq2PTb | |
| section_end:1661694537:upload_artifacts_on_success [0Ksection_start:1661694537:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1661694538:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.1.0 (76984217)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1661694149:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1661694149:resolve_secrets [0Ksection_start:1661694149:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.1.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2102711181, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 71526, build ref 567bd21cc895460c3e176d71d24dd82a549835a9, job ID 338715 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J338715_PROD_P112_CP9_C10 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 749547 | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J338715_PROD_P112_CP9_C10 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --ntasks=2 --jobid=749547 --cpus-per-task=8 --mem=76G | |
| section_end:1661694151:prepare_executor [0Ksection_start:1661694151:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i6n32 via bbpv1.epfl.ch... | |
| section_end:1661694153:prepare_script [0Ksection_start:1661694153:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1661694153:get_sources [0Ksection_start:1661694153:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:coreneuron:nmodl:nvhpc:omp:debug-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=246878 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1661694158:restore_cache [0Ksection_start:1661694158:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:nmodl (338706)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=246963 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=338706 responseStatus[0;m=200 OK token[0;m=gpjzQh9N | |
| section_end:1661694158:download_artifacts [0Ksection_start:1661694158:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338715/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338715/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338715/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338715/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338715/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526/J338715_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron%nvhpc +caliper+gpu~legacy-unit+nmodl+openmp~shared+sympy+tests~unified build_type=Debug ^hpe-mpi%gcc ^caliper%gcc+cuda cuda_arch=70 ^/4dzxcpsuksxgtuoesheax4sf76wrhkqb | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be jxxwi7tb7ywd3tqe6pftnl5niadymxtw | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/749547/ccache | |
| Primary config: /nvme/bbpcihpcproj12/749547/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Sun Aug 28 15:43:05 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.36 / 0.51 (70.09 %) | |
| Files: 996 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'jxxwi7tb7ywd3tqe6pftnl5niadymxtw' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron%nvhpc+caliper+gpu~legacy-unit+nmodl+openmp~shared+sympy+tests~unified build_type=Debug | |
| - ^caliper%gcc+cuda cuda_arch=70 | |
| - ^hpe-mpi%gcc | |
| [+] ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - jxxwi7t coreneuron@develop%nvhpc@22.3+caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl+openmp~profile+report~shared+sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| - 6s6wcfe ^bison@3.8.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] fnw44jf ^boost@1.79.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] pfqy3p5 ^caliper@2.7.0%gcc@11.2.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi+sampler+shared~sosflow build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake | |
| [^] at3kmf2 ^adiak@0.2.1%gcc@11.2.0~ipo+mpi+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 2qmvlfy ^cmake@3.21.4%gcc@11.2.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [^] hyunzkn ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] wu42aul ^cuda@11.6.1%gcc@11.2.0~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] p6adpyi ^elfutils@0.186%gcc@11.2.0~bzip2~debuginfod+nls~xz arch=linux-rhel7-skylake | |
| [^] iu2b5hx ^gettext@0.21%gcc@11.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake | |
| [^] 3rmq3zx ^bzip2@1.0.8%gcc@11.2.0~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] hxxlexb ^libiconv@1.16%gcc@11.2.0 libs=shared,static arch=linux-rhel7-skylake | |
| [^] dnxqn2k ^libxml2@2.9.12%gcc@11.2.0~python arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] jzpqn5y ^xz@5.2.5%gcc@11.2.0~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] evtnqzd ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ams67cx ^ncurses@6.2%gcc@11.2.0~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] ir7xtbl ^tar@1.28%gcc@11.2.0 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| - bmpk6ez ^m4@1.4.16%gcc@11.2.0+sigsegv arch=linux-rhel7-skylake | |
| [^] gc2ivgg ^libunwind@1.5.0%gcc@11.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib components=none libs=shared,static arch=linux-rhel7-skylake | |
| [^] vcit7s5 ^papi@6.0.0.1%gcc@11.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools amdgpu_target=none arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| - ajxdymq ^flex@2.6.3%nvhpc@22.3+lex~nls arch=linux-rhel7-skylake | |
| [^] lbajih4 ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] r74vcyb ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7lotjqk ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| - cp3ofsp ^ninja@1.10.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [+] 4dzxcps ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] atktt2p ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] e5qqxxq ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] jjl6cjc ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] z5kzef6 ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vt2or7v ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-6s6wcfeanp2mkdib4c3n3ivkcuosopgm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.79.0-zoxhho (external boost-1.79.0-fnw44jfbxyivagsnavjnk6zdaghmffbt) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-2qmvlfyylrv3t5ankluyr5cqey2nlfzd) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| ==> cuda@11.6.1 : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-wu42aulcivrayjquerqpqvvjeadgosp2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-3rmq3zxuntsiphthnvty6gtydbmbkwr5) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libiconv-1.16-hxxlex | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/xz-5.2.5-jzpqn5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-ams67cxbq5vc7wiay2ndr2ksce2igbfw) | |
| [+] /usr (external tar-1.28-ir7xtblauhq3vtkpjrl7ou3nzevcsi3u) | |
| [+] /usr (external m4-1.4.16-bmpk6ezkxo3553jsm5thxh7ygtrom3dn) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libunwind-1.5.0-gc2ivg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/papi-6.0.0.1-vcit7s | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-ajxdymqhnzqgeuhvk5nu5zfymzq35n6i) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/fmt-8.1.1-7lotjq | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-cp3ofspgkdqaqih5vrhotmdwvkozfswp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/catch2-2.13.8-atktt2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/cli11-2.1.1-e5qqxx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/nlohmann-json-3.10.4-jjl6cj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/adiak-0.2.1-at3kmf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libxml2-2.9.12-dnxqn2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pybind11-2.9.1-z5kzef | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-r74vcy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/gettext-0.21-iu2b5h | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.9-vt2or7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1.1-lbajih | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/elfutils-0.186-p6adpy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/caliper-2.7.0-pfqy3p | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/software/install_gcc-11.2.0-skylake/nmodl-develop-4dzxcp | |
| ==> Installing coreneuron-develop-jxxwi7tb7ywd3tqe6pftnl5niadymxtw | |
| ==> No binary for coreneuron-develop-jxxwi7tb7ywd3tqe6pftnl5niadymxtw found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526, but it is owned by 0 | |
| ==> No patches needed for coreneuron | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| ==> coreneuron: Successfully installed coreneuron-develop-jxxwi7tb7ywd3tqe6pftnl5niadymxtw | |
| Fetch: 3.99s. Build: 3m 48.08s. Total: 3m 52.08s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/software/install_nvhpc-22.3-skylake/coreneuron-develop-jxxwi7 | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/749547/ccache | |
| Primary config: /nvme/bbpcihpcproj12/749547/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Sun Aug 28 15:47:50 2022 | |
| Hits: 86 / 96 (89.58 %) | |
| Direct: 77 / 96 (80.21 %) | |
| Preprocessed: 9 / 19 (47.37 %) | |
| Misses: 10 | |
| Direct: 19 | |
| Preprocessed: 10 | |
| Uncacheable: 19 | |
| Primary storage: | |
| Hits: 163 / 192 (84.90 %) | |
| Misses: 29 | |
| Cache size (GB): 0.36 / 0.51 (70.92 %) | |
| Files: 1025 | |
| Uncacheable: | |
| Called for linking: 16 | |
| No input file: 3 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1661694472:step_script [0Ksection_start:1661694472:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:coreneuron:nmodl:nvhpc:omp:debug-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=249892 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Anmodl%3Anvhpc%3Aomp%3Adebug-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1661694488:archive_cache [0Ksection_start:1661694488:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=249989 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=338715 responseStatus[0;m=201 Created token[0;m=gpjzQh9N | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=250030 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=338715 responseStatus[0;m=201 Created token[0;m=gpjzQh9N | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=250071 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=338715 responseStatus[0;m=201 Created token[0;m=gpjzQh9N | |
| section_end:1661694489:upload_artifacts_on_success [0Ksection_start:1661694489:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1661694490:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.1.0 (76984217)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1661694148:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1661694148:resolve_secrets [0Ksection_start:1661694148:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.1.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1817122534, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 71526, build ref 567bd21cc895460c3e176d71d24dd82a549835a9, job ID 338714 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J338714_PROD_P112_CP8_C9 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 749546 | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J338714_PROD_P112_CP8_C9 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --ntasks=2 --jobid=749546 --cpus-per-task=8 --mem=76G | |
| section_end:1661694151:prepare_executor [0Ksection_start:1661694151:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i6n29 via bbpv1.epfl.ch... | |
| section_end:1661694156:prepare_script [0Ksection_start:1661694156:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1661694157:get_sources [0Ksection_start:1661694157:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:coreneuron:nmodl:nvhpc:omp:legacy-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=235564 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1661694159:restore_cache [0Ksection_start:1661694159:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:nmodl (338706)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=236074 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=338706 responseStatus[0;m=200 OK token[0;m=tvXythyW | |
| section_end:1661694160:download_artifacts [0Ksection_start:1661694160:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338714/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338714/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338714/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338714/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338714/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526/J338714_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron%nvhpc +caliper+gpu~legacy-unit+nmodl+openmp~shared~sympy+tests~unified build_type=RelWithDebInfo ^hpe-mpi%gcc ^caliper%gcc+cuda cuda_arch=70 ^/4dzxcpsuksxgtuoesheax4sf76wrhkqb | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be fvo2p7thv6sxw3npnc3ku63mdpvkocdm | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/749546/ccache | |
| Primary config: /nvme/bbpcihpcproj12/749546/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Sun Aug 28 15:43:06 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.15 / 0.51 (29.08 %) | |
| Files: 1088 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'fvo2p7thv6sxw3npnc3ku63mdpvkocdm' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron%nvhpc+caliper+gpu~legacy-unit+nmodl+openmp~shared~sympy+tests~unified build_type=RelWithDebInfo | |
| - ^caliper%gcc+cuda cuda_arch=70 | |
| - ^hpe-mpi%gcc | |
| [+] ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - fvo2p7t coreneuron@develop%nvhpc@22.3+caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl+openmp~profile+report~shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - 6s6wcfe ^bison@3.8.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] fnw44jf ^boost@1.79.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] pfqy3p5 ^caliper@2.7.0%gcc@11.2.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi+sampler+shared~sosflow build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake | |
| [^] at3kmf2 ^adiak@0.2.1%gcc@11.2.0~ipo+mpi+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 2qmvlfy ^cmake@3.21.4%gcc@11.2.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [^] hyunzkn ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] wu42aul ^cuda@11.6.1%gcc@11.2.0~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] p6adpyi ^elfutils@0.186%gcc@11.2.0~bzip2~debuginfod+nls~xz arch=linux-rhel7-skylake | |
| [^] iu2b5hx ^gettext@0.21%gcc@11.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake | |
| [^] 3rmq3zx ^bzip2@1.0.8%gcc@11.2.0~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] hxxlexb ^libiconv@1.16%gcc@11.2.0 libs=shared,static arch=linux-rhel7-skylake | |
| [^] dnxqn2k ^libxml2@2.9.12%gcc@11.2.0~python arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] jzpqn5y ^xz@5.2.5%gcc@11.2.0~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] evtnqzd ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ams67cx ^ncurses@6.2%gcc@11.2.0~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] ir7xtbl ^tar@1.28%gcc@11.2.0 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| - bmpk6ez ^m4@1.4.16%gcc@11.2.0+sigsegv arch=linux-rhel7-skylake | |
| [^] gc2ivgg ^libunwind@1.5.0%gcc@11.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib components=none libs=shared,static arch=linux-rhel7-skylake | |
| [^] vcit7s5 ^papi@6.0.0.1%gcc@11.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools amdgpu_target=none arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| - ajxdymq ^flex@2.6.3%nvhpc@22.3+lex~nls arch=linux-rhel7-skylake | |
| [^] lbajih4 ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] r74vcyb ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7lotjqk ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| - cp3ofsp ^ninja@1.10.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [+] 4dzxcps ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] atktt2p ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] e5qqxxq ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] jjl6cjc ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] z5kzef6 ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vt2or7v ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-6s6wcfeanp2mkdib4c3n3ivkcuosopgm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.79.0-zoxhho (external boost-1.79.0-fnw44jfbxyivagsnavjnk6zdaghmffbt) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-2qmvlfyylrv3t5ankluyr5cqey2nlfzd) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| ==> cuda@11.6.1 : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-wu42aulcivrayjquerqpqvvjeadgosp2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-3rmq3zxuntsiphthnvty6gtydbmbkwr5) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libiconv-1.16-hxxlex | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/xz-5.2.5-jzpqn5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-ams67cxbq5vc7wiay2ndr2ksce2igbfw) | |
| [+] /usr (external tar-1.28-ir7xtblauhq3vtkpjrl7ou3nzevcsi3u) | |
| [+] /usr (external m4-1.4.16-bmpk6ezkxo3553jsm5thxh7ygtrom3dn) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libunwind-1.5.0-gc2ivg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/papi-6.0.0.1-vcit7s | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-ajxdymqhnzqgeuhvk5nu5zfymzq35n6i) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/fmt-8.1.1-7lotjq | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-cp3ofspgkdqaqih5vrhotmdwvkozfswp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/catch2-2.13.8-atktt2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/cli11-2.1.1-e5qqxx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/nlohmann-json-3.10.4-jjl6cj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/adiak-0.2.1-at3kmf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libxml2-2.9.12-dnxqn2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pybind11-2.9.1-z5kzef | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-r74vcy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/gettext-0.21-iu2b5h | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.9-vt2or7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1.1-lbajih | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/elfutils-0.186-p6adpy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/caliper-2.7.0-pfqy3p | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/software/install_gcc-11.2.0-skylake/nmodl-develop-4dzxcp | |
| ==> Installing coreneuron-develop-fvo2p7thv6sxw3npnc3ku63mdpvkocdm | |
| ==> No binary for coreneuron-develop-fvo2p7thv6sxw3npnc3ku63mdpvkocdm found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526, but it is owned by 0 | |
| ==> No patches needed for coreneuron | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| ==> coreneuron: Successfully installed coreneuron-develop-fvo2p7thv6sxw3npnc3ku63mdpvkocdm | |
| Fetch: 4.14s. Build: 7m 50.94s. Total: 7m 55.09s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/software/install_nvhpc-22.3-skylake/coreneuron-develop-fvo2p7 | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/749546/ccache | |
| Primary config: /nvme/bbpcihpcproj12/749546/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Sun Aug 28 15:51:58 2022 | |
| Hits: 86 / 96 (89.58 %) | |
| Direct: 77 / 96 (80.21 %) | |
| Preprocessed: 9 / 19 (47.37 %) | |
| Misses: 10 | |
| Direct: 19 | |
| Preprocessed: 10 | |
| Uncacheable: 19 | |
| Primary storage: | |
| Hits: 163 / 192 (84.90 %) | |
| Misses: 29 | |
| Cache size (GB): 0.15 / 0.51 (29.63 %) | |
| Files: 1117 | |
| Uncacheable: | |
| Called for linking: 16 | |
| No input file: 3 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1661694721:step_script [0Ksection_start:1661694721:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:coreneuron:nmodl:nvhpc:omp:legacy-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=252401 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Anmodl%3Anvhpc%3Aomp%3Alegacy-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1661694729:archive_cache [0Ksection_start:1661694729:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=252687 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=338714 responseStatus[0;m=201 Created token[0;m=tvXythyW | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=252726 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=338714 responseStatus[0;m=201 Created token[0;m=tvXythyW | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=252787 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=338714 responseStatus[0;m=201 Created token[0;m=tvXythyW | |
| section_end:1661694730:upload_artifacts_on_success [0Ksection_start:1661694730:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1661694731:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.1.0 (76984217)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1661694297:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1661694297:resolve_secrets [0Ksection_start:1661694297:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.1.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3655085875, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 71526, build ref 567bd21cc895460c3e176d71d24dd82a549835a9, job ID 338717 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J338717_PROD_P112_CP0_C0 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 749548 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J338717_PROD_P112_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --ntasks=2 --jobid=749548 --cpus-per-task=8 --mem=76G | |
| section_end:1661694298:prepare_executor [0Ksection_start:1661694298:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i7n22 via bbpv1.epfl.ch... | |
| section_end:1661694300:prepare_script [0Ksection_start:1661694300:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1661694301:get_sources [0Ksection_start:1661694301:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:neuron:nmodl:intel:debug:legacy-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=81879 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1661694302:restore_cache [0Ksection_start:1661694302:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:intel:debug:legacy (338708)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=82117 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=338708 responseStatus[0;m=200 OK token[0;m=cu7SMKJF | |
| section_end:1661694303:download_artifacts [0Ksection_start:1661694303:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338717/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338717/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338717/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338717/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338717/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526/J338717_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%intel +coreneuron+debug+tests~legacy-unit~rx3d model_tests=channel-benchmark,olfactory,tqperf-heavy ^/jfrkyskialbeoksqkfbq3l42w7o76waj | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be 6hecvyxx63bjcemn2f652e62xlwohiek | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/749548/ccache | |
| Primary config: /nvme/bbpcihpcproj12/749548/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Sun Aug 28 15:45:47 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.06 / 0.51 (12.00 %) | |
| Files: 2630 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: '6hecvyxx63bjcemn2f652e62xlwohiek' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%intel+coreneuron+debug~legacy-unit~rx3d+tests model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^coreneuron@develop%intel@2021.4.0+caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report~shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| [^] ^boost@1.79.0%intel@2021.4.0+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] ^caliper@2.7.0%gcc@11.2.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi+sampler+shared~sosflow build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake | |
| [^] ^adiak@0.2.1%gcc@11.2.0~ipo+mpi+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^cuda@11.6.1%gcc@11.2.0~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] ^elfutils@0.186%gcc@11.2.0~bzip2~debuginfod+nls~xz arch=linux-rhel7-skylake | |
| [^] ^gettext@0.21%gcc@11.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake | |
| [^] ^bzip2@1.0.8%gcc@11.2.0~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] ^libiconv@1.16%gcc@11.2.0 libs=shared,static arch=linux-rhel7-skylake | |
| [^] ^libxml2@2.9.12%gcc@11.2.0~python arch=linux-rhel7-skylake | |
| [^] ^xz@5.2.5%gcc@11.2.0~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ^ncurses@6.2%gcc@11.2.0~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] ^tar@1.28%gcc@11.2.0 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| [^] ^libunwind@1.5.0%gcc@11.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib components=none libs=shared,static arch=linux-rhel7-skylake | |
| [^] ^papi@6.0.0.1%gcc@11.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools amdgpu_target=none arch=linux-rhel7-skylake | |
| [^] ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [+] ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - 6hecvyx neuron@develop%intel@2021.4.0+binary+caliper+coreneuron+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~profile+python~rx3d+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c sanitizers=None arch=linux-rhel7-skylake | |
| - dwdch6b ^bison@3.8.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] pfqy3p5 ^caliper@2.7.0%gcc@11.2.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi+sampler+shared~sosflow build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake | |
| [^] at3kmf2 ^adiak@0.2.1%gcc@11.2.0~ipo+mpi+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] hyunzkn ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] wu42aul ^cuda@11.6.1%gcc@11.2.0~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] p6adpyi ^elfutils@0.186%gcc@11.2.0~bzip2~debuginfod+nls~xz arch=linux-rhel7-skylake | |
| [^] iu2b5hx ^gettext@0.21%gcc@11.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake | |
| [^] 3rmq3zx ^bzip2@1.0.8%gcc@11.2.0~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] hxxlexb ^libiconv@1.16%gcc@11.2.0 libs=shared,static arch=linux-rhel7-skylake | |
| [^] dnxqn2k ^libxml2@2.9.12%gcc@11.2.0~python arch=linux-rhel7-skylake | |
| [^] jzpqn5y ^xz@5.2.5%gcc@11.2.0~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] evtnqzd ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ams67cx ^ncurses@6.2%gcc@11.2.0~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] ir7xtbl ^tar@1.28%gcc@11.2.0 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| [^] gc2ivgg ^libunwind@1.5.0%gcc@11.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib components=none libs=shared,static arch=linux-rhel7-skylake | |
| [^] vcit7s5 ^papi@6.0.0.1%gcc@11.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools amdgpu_target=none arch=linux-rhel7-skylake | |
| - z3q5f3x ^cmake@3.21.4%intel@2021.4.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [+] jfrkysk ^coreneuron@develop%intel@2021.4.0+caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report~shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| [^] rdrurry ^boost@1.79.0%intel@2021.4.0+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] lbajih4 ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] r74vcyb ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7lotjqk ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [+] 4dzxcps ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] atktt2p ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] e5qqxxq ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] jjl6cjc ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] z5kzef6 ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vt2or7v ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - s4ueg72 ^flex@2.6.3%intel@2021.4.0+lex~nls arch=linux-rhel7-skylake | |
| - 6ggc5yr ^ninja@1.10.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] n6q4vfz ^py-mpi4py@3.1.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] gjm7kkq ^py-numpy@1.19.5%gcc@11.2.0+blas+lapack patches=8a9d5d1b3f145c043b8b04869e7d46c6ff95c3f486d84f69693017c7e6190c7d arch=linux-rhel7-skylake | |
| [^] r5cvgru ^intel-mkl@2020.4.304%gcc@11.2.0~ilp64+shared threads=none arch=linux-rhel7-skylake | |
| [^] h2fsi6i ^py-cython@0.29.24%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] q5n7ofc ^py-pytest-cov@2.8.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] fudvy5v ^py-coverage@5.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5abs2t7 ^readline@8.1%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-dwdch6bmdeclr2novthsywtrryotawwz) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| ==> cuda@11.6.1 : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-wu42aulcivrayjquerqpqvvjeadgosp2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-3rmq3zxuntsiphthnvty6gtydbmbkwr5) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libiconv-1.16-hxxlex | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/xz-5.2.5-jzpqn5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-ams67cxbq5vc7wiay2ndr2ksce2igbfw) | |
| [+] /usr (external tar-1.28-ir7xtblauhq3vtkpjrl7ou3nzevcsi3u) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libunwind-1.5.0-gc2ivg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/papi-6.0.0.1-vcit7s | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-z3q5f3xwpuibd3qbgdscqmu3efarbu42) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.79.0-zoxhho (external boost-1.79.0-rdrurryqe5eahijb4xf6mbqfryg7ezod) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/fmt-8.1.1-7lotjq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/catch2-2.13.8-atktt2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/cli11-2.1.1-e5qqxx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/nlohmann-json-3.10.4-jjl6cj | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-s4ueg72j7l6vkdyvfxj2tweo7v7s3otx) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-6ggc5yre7qddwxdjmn7sfptpdoiy4dtp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/intel-mkl-2020.4.304-rzr3hj (external intel-mkl-2020.4.304-r5cvgrurdnt6y267arsmmmgqi75ouxd2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/readline-8.1-we2frg (external readline-8.1-5abs2t7f6dtgbejv6kjzd4gjwhdlr7qr) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/adiak-0.2.1-at3kmf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libxml2-2.9.12-dnxqn2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-r74vcy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pybind11-2.9.1-z5kzef | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/gettext-0.21-iu2b5h | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1.1-lbajih | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.9-vt2or7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpi4py-3.1.2-n6q4vf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-cython-0.29.24-h2fsi6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-coverage-5.5-fudvy5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/elfutils-0.186-p6adpy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-numpy-1.19.5-gjm7kk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/caliper-2.7.0-pfqy3p | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/software/install_gcc-11.2.0-skylake/nmodl-develop-4dzxcp | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-cov-2.8.1-q5n7of | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/software/install_intel-2021.4.0-skylake/coreneuron-develop-jfrkys | |
| ==> Installing neuron-develop-6hecvyxx63bjcemn2f652e62xlwohiek | |
| ==> No binary for neuron-develop-6hecvyxx63bjcemn2f652e62xlwohiek found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526, but it is owned by 0 | |
| ==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-6hecvyxx63bjcemn2f652e62xlwohiek | |
| Fetch: 39.70s. Build: 23m 38.79s. Total: 24m 18.49s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/software/install_intel-2021.4.0-skylake/neuron-develop-6hecvy | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/749548/ccache | |
| Primary config: /nvme/bbpcihpcproj12/749548/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Sun Aug 28 16:12:08 2022 | |
| Hits: 707 / 804 (87.94 %) | |
| Direct: 167 / 813 (20.54 %) | |
| Preprocessed: 540 / 640 (84.38 %) | |
| Misses: 97 | |
| Direct: 646 | |
| Preprocessed: 100 | |
| Uncacheable: 122 | |
| Primary storage: | |
| Hits: 1175 / 1620 (72.53 %) | |
| Misses: 445 | |
| Cache size (GB): 0.06 / 0.51 (12.68 %) | |
| Files: 2985 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 99 | |
| Called for preprocessing: 1 | |
| Compilation failed: 3 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1661695929:step_script [0Ksection_start:1661695929:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:neuron:nmodl:intel:debug:legacy-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=124406 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Anmodl%3Aintel%3Adebug%3Alegacy-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1661695933:archive_cache [0Ksection_start:1661695933:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=124477 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=338717 responseStatus[0;m=201 Created token[0;m=cu7SMKJF | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=124515 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=338717 responseStatus[0;m=201 Created token[0;m=cu7SMKJF | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=124551 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=338717 responseStatus[0;m=201 Created token[0;m=cu7SMKJF | |
| section_end:1661695934:upload_artifacts_on_success [0Ksection_start:1661695934:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1661695935:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.1.0 (76984217)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1661694540:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1661694540:resolve_secrets [0Ksection_start:1661694540:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.1.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2615722881, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 71526, build ref 567bd21cc895460c3e176d71d24dd82a549835a9, job ID 338720 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J338720_PROD_P112_CP6_C7 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 749554 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J338720_PROD_P112_CP6_C7 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --ntasks=2 --jobid=749554 --cpus-per-task=8 --mem=76G | |
| section_end:1661694541:prepare_executor [0Ksection_start:1661694541:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i6n29 via bbpv1.epfl.ch... | |
| section_end:1661694544:prepare_script [0Ksection_start:1661694544:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1661694544:get_sources [0Ksection_start:1661694544:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:acc:debug:legacy-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=249454 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1661694547:restore_cache [0Ksection_start:1661694547:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:nvhpc:acc:debug:legacy (338712)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=249523 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=338712 responseStatus[0;m=200 OK token[0;m=SLAouWf- | |
| section_end:1661694547:download_artifacts [0Ksection_start:1661694547:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338720/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338720/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338720/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338720/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338720/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526/J338720_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc +coreneuron+debug+tests~legacy-unit~rx3d model_tests=channel-benchmark,olfactory,tqperf-heavy ^/js5laijjlbd563352whng5sdc5aazwvb | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be lvcy5zecd44mre3mxxopfuftzl6uqnxc | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/749554/ccache | |
| Primary config: /nvme/bbpcihpcproj12/749554/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Sun Aug 28 15:49:48 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.14 / 0.51 (26.76 %) | |
| Files: 2627 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'lvcy5zecd44mre3mxxopfuftzl6uqnxc' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+coreneuron+debug~legacy-unit~rx3d+tests model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^coreneuron@develop%nvhpc@22.3+caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report~shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| [^] ^boost@1.79.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] ^caliper@2.7.0%gcc@11.2.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi+sampler+shared~sosflow build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake | |
| [^] ^adiak@0.2.1%gcc@11.2.0~ipo+mpi+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^cuda@11.6.1%gcc@11.2.0~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] ^elfutils@0.186%gcc@11.2.0~bzip2~debuginfod+nls~xz arch=linux-rhel7-skylake | |
| [^] ^gettext@0.21%gcc@11.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake | |
| [^] ^bzip2@1.0.8%gcc@11.2.0~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] ^libiconv@1.16%gcc@11.2.0 libs=shared,static arch=linux-rhel7-skylake | |
| [^] ^libxml2@2.9.12%gcc@11.2.0~python arch=linux-rhel7-skylake | |
| [^] ^xz@5.2.5%gcc@11.2.0~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ^ncurses@6.2%gcc@11.2.0~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] ^tar@1.28%gcc@11.2.0 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| [^] ^libunwind@1.5.0%gcc@11.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib components=none libs=shared,static arch=linux-rhel7-skylake | |
| [^] ^papi@6.0.0.1%gcc@11.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools amdgpu_target=none arch=linux-rhel7-skylake | |
| [^] ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [+] ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - lvcy5ze neuron@develop%nvhpc@22.3+binary+caliper+coreneuron+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~profile+python~rx3d+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c sanitizers=None arch=linux-rhel7-skylake | |
| - 6s6wcfe ^bison@3.8.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] pfqy3p5 ^caliper@2.7.0%gcc@11.2.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi+sampler+shared~sosflow build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake | |
| [^] at3kmf2 ^adiak@0.2.1%gcc@11.2.0~ipo+mpi+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] hyunzkn ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] wu42aul ^cuda@11.6.1%gcc@11.2.0~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] p6adpyi ^elfutils@0.186%gcc@11.2.0~bzip2~debuginfod+nls~xz arch=linux-rhel7-skylake | |
| [^] iu2b5hx ^gettext@0.21%gcc@11.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake | |
| [^] 3rmq3zx ^bzip2@1.0.8%gcc@11.2.0~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] hxxlexb ^libiconv@1.16%gcc@11.2.0 libs=shared,static arch=linux-rhel7-skylake | |
| [^] dnxqn2k ^libxml2@2.9.12%gcc@11.2.0~python arch=linux-rhel7-skylake | |
| [^] jzpqn5y ^xz@5.2.5%gcc@11.2.0~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] evtnqzd ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ams67cx ^ncurses@6.2%gcc@11.2.0~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] ir7xtbl ^tar@1.28%gcc@11.2.0 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| [^] gc2ivgg ^libunwind@1.5.0%gcc@11.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib components=none libs=shared,static arch=linux-rhel7-skylake | |
| [^] vcit7s5 ^papi@6.0.0.1%gcc@11.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools amdgpu_target=none arch=linux-rhel7-skylake | |
| - ucwiakr ^cmake@3.21.4%nvhpc@22.3~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [+] js5laij ^coreneuron@develop%nvhpc@22.3+caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report~shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| [^] fnw44jf ^boost@1.79.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] lbajih4 ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] r74vcyb ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7lotjqk ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [+] 4dzxcps ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] atktt2p ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] e5qqxxq ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] jjl6cjc ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] z5kzef6 ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vt2or7v ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - ajxdymq ^flex@2.6.3%nvhpc@22.3+lex~nls arch=linux-rhel7-skylake | |
| - cp3ofsp ^ninja@1.10.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] n6q4vfz ^py-mpi4py@3.1.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] gjm7kkq ^py-numpy@1.19.5%gcc@11.2.0+blas+lapack patches=8a9d5d1b3f145c043b8b04869e7d46c6ff95c3f486d84f69693017c7e6190c7d arch=linux-rhel7-skylake | |
| [^] r5cvgru ^intel-mkl@2020.4.304%gcc@11.2.0~ilp64+shared threads=none arch=linux-rhel7-skylake | |
| [^] h2fsi6i ^py-cython@0.29.24%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] q5n7ofc ^py-pytest-cov@2.8.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] fudvy5v ^py-coverage@5.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 3333cwm ^readline@8.1%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-6s6wcfeanp2mkdib4c3n3ivkcuosopgm) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| ==> cuda@11.6.1 : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-wu42aulcivrayjquerqpqvvjeadgosp2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-3rmq3zxuntsiphthnvty6gtydbmbkwr5) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libiconv-1.16-hxxlex | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/xz-5.2.5-jzpqn5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-ams67cxbq5vc7wiay2ndr2ksce2igbfw) | |
| [+] /usr (external tar-1.28-ir7xtblauhq3vtkpjrl7ou3nzevcsi3u) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libunwind-1.5.0-gc2ivg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/papi-6.0.0.1-vcit7s | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-ucwiakreeghdgbo22kbqqhgnnlwxqtnn) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.79.0-zoxhho (external boost-1.79.0-fnw44jfbxyivagsnavjnk6zdaghmffbt) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/fmt-8.1.1-7lotjq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/catch2-2.13.8-atktt2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/cli11-2.1.1-e5qqxx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/nlohmann-json-3.10.4-jjl6cj | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-ajxdymqhnzqgeuhvk5nu5zfymzq35n6i) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-cp3ofspgkdqaqih5vrhotmdwvkozfswp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/intel-mkl-2020.4.304-rzr3hj (external intel-mkl-2020.4.304-r5cvgrurdnt6y267arsmmmgqi75ouxd2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/readline-8.1-we2frg (external readline-8.1-3333cwmykvahrsdydir4qeyasic3liq6) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/adiak-0.2.1-at3kmf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libxml2-2.9.12-dnxqn2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-r74vcy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pybind11-2.9.1-z5kzef | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/gettext-0.21-iu2b5h | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1.1-lbajih | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.9-vt2or7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-coverage-5.5-fudvy5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-cython-0.29.24-h2fsi6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpi4py-3.1.2-n6q4vf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/elfutils-0.186-p6adpy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-numpy-1.19.5-gjm7kk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/caliper-2.7.0-pfqy3p | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-cov-2.8.1-q5n7of | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/software/install_gcc-11.2.0-skylake/nmodl-develop-4dzxcp | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/software/install_nvhpc-22.3-skylake/coreneuron-develop-js5lai | |
| ==> Installing neuron-develop-lvcy5zecd44mre3mxxopfuftzl6uqnxc | |
| ==> No binary for neuron-develop-lvcy5zecd44mre3mxxopfuftzl6uqnxc found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526, but it is owned by 0 | |
| ==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-lvcy5zecd44mre3mxxopfuftzl6uqnxc | |
| Fetch: 28.50s. Build: 47m 36.23s. Total: 48m 4.73s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/software/install_nvhpc-22.3-skylake/neuron-develop-lvcy5z | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/749554/ccache | |
| Primary config: /nvme/bbpcihpcproj12/749554/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Sun Aug 28 16:39:45 2022 | |
| Hits: 707 / 803 (88.04 %) | |
| Direct: 168 / 812 (20.69 %) | |
| Preprocessed: 539 / 638 (84.48 %) | |
| Misses: 96 | |
| Direct: 644 | |
| Preprocessed: 99 | |
| Uncacheable: 121 | |
| Primary storage: | |
| Hits: 1176 / 1618 (72.68 %) | |
| Misses: 442 | |
| Cache size (GB): 0.14 / 0.51 (27.60 %) | |
| Files: 2979 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 98 | |
| Called for preprocessing: 1 | |
| Compilation failed: 3 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1661697586:step_script [0Ksection_start:1661697586:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:neuron:nmodl:nvhpc:acc:debug:legacy-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=10507 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Anmodl%3Anvhpc%3Aacc%3Adebug%3Alegacy-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1661697593:archive_cache [0Ksection_start:1661697593:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=10972 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=338720 responseStatus[0;m=201 Created token[0;m=SLAouWf- | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=11013 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=338720 responseStatus[0;m=201 Created token[0;m=SLAouWf- | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=11053 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=338720 responseStatus[0;m=201 Created token[0;m=SLAouWf- | |
| section_end:1661697595:upload_artifacts_on_success [0Ksection_start:1661697595:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1661697595:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.1.0 (76984217)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1661694492:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1661694492:resolve_secrets [0Ksection_start:1661694492:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.1.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor763927640, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 71526, build ref 567bd21cc895460c3e176d71d24dd82a549835a9, job ID 338723 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J338723_PROD_P112_CP4_C5 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 749552 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J338723_PROD_P112_CP4_C5 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --ntasks=2 --jobid=749552 --cpus-per-task=8 --mem=76G | |
| section_end:1661694493:prepare_executor [0Ksection_start:1661694493:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i6n32 via bbpv1.epfl.ch... | |
| section_end:1661694495:prepare_script [0Ksection_start:1661694495:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1661694496:get_sources [0Ksection_start:1661694496:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:omp:debug-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=250467 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1661694499:restore_cache [0Ksection_start:1661694499:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:nvhpc:omp:debug (338715)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=250534 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=338715 responseStatus[0;m=200 OK token[0;m=BnKXiPx- | |
| section_end:1661694499:download_artifacts [0Ksection_start:1661694499:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338723/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338723/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338723/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338723/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338723/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526/J338723_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc +coreneuron+debug+tests~legacy-unit~rx3d model_tests=channel-benchmark,olfactory,tqperf-heavy ^/jxxwi7tb7ywd3tqe6pftnl5niadymxtw | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be vtjq7esybh2ym7tes5ofxa3pxinwhfjb | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/749552/ccache | |
| Primary config: /nvme/bbpcihpcproj12/749552/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Sun Aug 28 15:48:45 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.16 / 0.51 (32.05 %) | |
| Files: 2632 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'vtjq7esybh2ym7tes5ofxa3pxinwhfjb' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+coreneuron+debug~legacy-unit~rx3d+tests model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^coreneuron@develop%nvhpc@22.3+caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl+openmp~profile+report~shared+sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| [^] ^boost@1.79.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] ^caliper@2.7.0%gcc@11.2.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi+sampler+shared~sosflow build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake | |
| [^] ^adiak@0.2.1%gcc@11.2.0~ipo+mpi+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^cuda@11.6.1%gcc@11.2.0~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] ^elfutils@0.186%gcc@11.2.0~bzip2~debuginfod+nls~xz arch=linux-rhel7-skylake | |
| [^] ^gettext@0.21%gcc@11.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake | |
| [^] ^bzip2@1.0.8%gcc@11.2.0~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] ^libiconv@1.16%gcc@11.2.0 libs=shared,static arch=linux-rhel7-skylake | |
| [^] ^libxml2@2.9.12%gcc@11.2.0~python arch=linux-rhel7-skylake | |
| [^] ^xz@5.2.5%gcc@11.2.0~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ^ncurses@6.2%gcc@11.2.0~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] ^tar@1.28%gcc@11.2.0 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| [^] ^libunwind@1.5.0%gcc@11.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib components=none libs=shared,static arch=linux-rhel7-skylake | |
| [^] ^papi@6.0.0.1%gcc@11.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools amdgpu_target=none arch=linux-rhel7-skylake | |
| [^] ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [+] ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - vtjq7es neuron@develop%nvhpc@22.3+binary+caliper+coreneuron+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~profile+python~rx3d+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c sanitizers=None arch=linux-rhel7-skylake | |
| - 6s6wcfe ^bison@3.8.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] pfqy3p5 ^caliper@2.7.0%gcc@11.2.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi+sampler+shared~sosflow build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake | |
| [^] at3kmf2 ^adiak@0.2.1%gcc@11.2.0~ipo+mpi+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] hyunzkn ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] wu42aul ^cuda@11.6.1%gcc@11.2.0~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] p6adpyi ^elfutils@0.186%gcc@11.2.0~bzip2~debuginfod+nls~xz arch=linux-rhel7-skylake | |
| [^] iu2b5hx ^gettext@0.21%gcc@11.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake | |
| [^] 3rmq3zx ^bzip2@1.0.8%gcc@11.2.0~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] hxxlexb ^libiconv@1.16%gcc@11.2.0 libs=shared,static arch=linux-rhel7-skylake | |
| [^] dnxqn2k ^libxml2@2.9.12%gcc@11.2.0~python arch=linux-rhel7-skylake | |
| [^] jzpqn5y ^xz@5.2.5%gcc@11.2.0~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] evtnqzd ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ams67cx ^ncurses@6.2%gcc@11.2.0~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] ir7xtbl ^tar@1.28%gcc@11.2.0 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| [^] gc2ivgg ^libunwind@1.5.0%gcc@11.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib components=none libs=shared,static arch=linux-rhel7-skylake | |
| [^] vcit7s5 ^papi@6.0.0.1%gcc@11.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools amdgpu_target=none arch=linux-rhel7-skylake | |
| - ucwiakr ^cmake@3.21.4%nvhpc@22.3~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [+] jxxwi7t ^coreneuron@develop%nvhpc@22.3+caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl+openmp~profile+report~shared+sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| [^] fnw44jf ^boost@1.79.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] lbajih4 ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] r74vcyb ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7lotjqk ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [+] 4dzxcps ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] atktt2p ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] e5qqxxq ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] jjl6cjc ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] z5kzef6 ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vt2or7v ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - ajxdymq ^flex@2.6.3%nvhpc@22.3+lex~nls arch=linux-rhel7-skylake | |
| - cp3ofsp ^ninja@1.10.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] n6q4vfz ^py-mpi4py@3.1.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] gjm7kkq ^py-numpy@1.19.5%gcc@11.2.0+blas+lapack patches=8a9d5d1b3f145c043b8b04869e7d46c6ff95c3f486d84f69693017c7e6190c7d arch=linux-rhel7-skylake | |
| [^] r5cvgru ^intel-mkl@2020.4.304%gcc@11.2.0~ilp64+shared threads=none arch=linux-rhel7-skylake | |
| [^] h2fsi6i ^py-cython@0.29.24%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] q5n7ofc ^py-pytest-cov@2.8.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] fudvy5v ^py-coverage@5.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 3333cwm ^readline@8.1%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-6s6wcfeanp2mkdib4c3n3ivkcuosopgm) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| ==> cuda@11.6.1 : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-wu42aulcivrayjquerqpqvvjeadgosp2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-3rmq3zxuntsiphthnvty6gtydbmbkwr5) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libiconv-1.16-hxxlex | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/xz-5.2.5-jzpqn5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-ams67cxbq5vc7wiay2ndr2ksce2igbfw) | |
| [+] /usr (external tar-1.28-ir7xtblauhq3vtkpjrl7ou3nzevcsi3u) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libunwind-1.5.0-gc2ivg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/papi-6.0.0.1-vcit7s | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-ucwiakreeghdgbo22kbqqhgnnlwxqtnn) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.79.0-zoxhho (external boost-1.79.0-fnw44jfbxyivagsnavjnk6zdaghmffbt) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/fmt-8.1.1-7lotjq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/catch2-2.13.8-atktt2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/cli11-2.1.1-e5qqxx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/nlohmann-json-3.10.4-jjl6cj | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-ajxdymqhnzqgeuhvk5nu5zfymzq35n6i) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-cp3ofspgkdqaqih5vrhotmdwvkozfswp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/intel-mkl-2020.4.304-rzr3hj (external intel-mkl-2020.4.304-r5cvgrurdnt6y267arsmmmgqi75ouxd2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/readline-8.1-we2frg (external readline-8.1-3333cwmykvahrsdydir4qeyasic3liq6) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/adiak-0.2.1-at3kmf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libxml2-2.9.12-dnxqn2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-r74vcy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pybind11-2.9.1-z5kzef | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/gettext-0.21-iu2b5h | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1.1-lbajih | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpi4py-3.1.2-n6q4vf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-cython-0.29.24-h2fsi6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-coverage-5.5-fudvy5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.9-vt2or7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/elfutils-0.186-p6adpy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-numpy-1.19.5-gjm7kk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/caliper-2.7.0-pfqy3p | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-cov-2.8.1-q5n7of | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/software/install_gcc-11.2.0-skylake/nmodl-develop-4dzxcp | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/software/install_nvhpc-22.3-skylake/coreneuron-develop-jxxwi7 | |
| ==> Installing neuron-develop-vtjq7esybh2ym7tes5ofxa3pxinwhfjb | |
| ==> No binary for neuron-develop-vtjq7esybh2ym7tes5ofxa3pxinwhfjb found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526, but it is owned by 0 | |
| ==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-vtjq7esybh2ym7tes5ofxa3pxinwhfjb | |
| Fetch: 16.71s. Build: 13m 32.66s. Total: 13m 49.36s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/software/install_nvhpc-22.3-skylake/neuron-develop-vtjq7e | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/749552/ccache | |
| Primary config: /nvme/bbpcihpcproj12/749552/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Sun Aug 28 16:03:27 2022 | |
| Hits: 707 / 803 (88.04 %) | |
| Direct: 167 / 812 (20.57 %) | |
| Preprocessed: 540 / 639 (84.51 %) | |
| Misses: 96 | |
| Direct: 645 | |
| Preprocessed: 99 | |
| Uncacheable: 121 | |
| Primary storage: | |
| Hits: 1175 / 1618 (72.62 %) | |
| Misses: 443 | |
| Cache size (GB): 0.17 / 0.51 (32.91 %) | |
| Files: 2985 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 98 | |
| Called for preprocessing: 1 | |
| Compilation failed: 3 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1661695408:step_script [0Ksection_start:1661695408:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:neuron:nmodl:nvhpc:omp:debug-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=265391 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp%3Adebug-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1661695415:archive_cache [0Ksection_start:1661695415:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=265464 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=338723 responseStatus[0;m=201 Created token[0;m=BnKXiPx- | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=265504 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=338723 responseStatus[0;m=201 Created token[0;m=BnKXiPx- | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=265546 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=338723 responseStatus[0;m=201 Created token[0;m=BnKXiPx- | |
| section_end:1661695417:upload_artifacts_on_success [0Ksection_start:1661695417:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1661695417:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.1.0 (76984217)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1661694732:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1661694732:resolve_secrets [0Ksection_start:1661694732:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.1.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1701109461, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 71526, build ref 567bd21cc895460c3e176d71d24dd82a549835a9, job ID 338722 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J338722_PROD_P112_CP8_C9 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 749557 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J338722_PROD_P112_CP8_C9 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --ntasks=2 --jobid=749557 --cpus-per-task=8 --mem=76G | |
| section_end:1661694734:prepare_executor [0Ksection_start:1661694734:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i6n29 via bbpv1.epfl.ch... | |
| section_end:1661694737:prepare_script [0Ksection_start:1661694737:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1661694738:get_sources [0Ksection_start:1661694738:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:omp:legacy-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=253456 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1661694739:restore_cache [0Ksection_start:1661694739:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:nvhpc:omp:legacy (338714)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=253615 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=338714 responseStatus[0;m=200 OK token[0;m=XhLXxAfe | |
| section_end:1661694740:download_artifacts [0Ksection_start:1661694740:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338722/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338722/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338722/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338722/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338722/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526/J338722_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc +coreneuron+debug+tests~legacy-unit~rx3d model_tests=channel-benchmark,olfactory,tqperf-heavy ^/fvo2p7thv6sxw3npnc3ku63mdpvkocdm | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be uum4rxoougs2qufxjamnm344aykyy7s2 | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/749557/ccache | |
| Primary config: /nvme/bbpcihpcproj12/749557/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Sun Aug 28 15:53:01 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.09 / 0.51 (16.94 %) | |
| Files: 2625 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'uum4rxoougs2qufxjamnm344aykyy7s2' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+coreneuron+debug~legacy-unit~rx3d+tests model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^coreneuron@develop%nvhpc@22.3+caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl+openmp~profile+report~shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^boost@1.79.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] ^caliper@2.7.0%gcc@11.2.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi+sampler+shared~sosflow build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake | |
| [^] ^adiak@0.2.1%gcc@11.2.0~ipo+mpi+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^cuda@11.6.1%gcc@11.2.0~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] ^elfutils@0.186%gcc@11.2.0~bzip2~debuginfod+nls~xz arch=linux-rhel7-skylake | |
| [^] ^gettext@0.21%gcc@11.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake | |
| [^] ^bzip2@1.0.8%gcc@11.2.0~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] ^libiconv@1.16%gcc@11.2.0 libs=shared,static arch=linux-rhel7-skylake | |
| [^] ^libxml2@2.9.12%gcc@11.2.0~python arch=linux-rhel7-skylake | |
| [^] ^xz@5.2.5%gcc@11.2.0~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ^ncurses@6.2%gcc@11.2.0~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] ^tar@1.28%gcc@11.2.0 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| [^] ^libunwind@1.5.0%gcc@11.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib components=none libs=shared,static arch=linux-rhel7-skylake | |
| [^] ^papi@6.0.0.1%gcc@11.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools amdgpu_target=none arch=linux-rhel7-skylake | |
| [^] ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [+] ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - uum4rxo neuron@develop%nvhpc@22.3+binary+caliper+coreneuron+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~profile+python~rx3d+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c sanitizers=None arch=linux-rhel7-skylake | |
| - 6s6wcfe ^bison@3.8.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] pfqy3p5 ^caliper@2.7.0%gcc@11.2.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi+sampler+shared~sosflow build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake | |
| [^] at3kmf2 ^adiak@0.2.1%gcc@11.2.0~ipo+mpi+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] hyunzkn ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] wu42aul ^cuda@11.6.1%gcc@11.2.0~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] p6adpyi ^elfutils@0.186%gcc@11.2.0~bzip2~debuginfod+nls~xz arch=linux-rhel7-skylake | |
| [^] iu2b5hx ^gettext@0.21%gcc@11.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake | |
| [^] 3rmq3zx ^bzip2@1.0.8%gcc@11.2.0~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] hxxlexb ^libiconv@1.16%gcc@11.2.0 libs=shared,static arch=linux-rhel7-skylake | |
| [^] dnxqn2k ^libxml2@2.9.12%gcc@11.2.0~python arch=linux-rhel7-skylake | |
| [^] jzpqn5y ^xz@5.2.5%gcc@11.2.0~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] evtnqzd ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ams67cx ^ncurses@6.2%gcc@11.2.0~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] ir7xtbl ^tar@1.28%gcc@11.2.0 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| [^] gc2ivgg ^libunwind@1.5.0%gcc@11.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib components=none libs=shared,static arch=linux-rhel7-skylake | |
| [^] vcit7s5 ^papi@6.0.0.1%gcc@11.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools amdgpu_target=none arch=linux-rhel7-skylake | |
| - ucwiakr ^cmake@3.21.4%nvhpc@22.3~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [+] fvo2p7t ^coreneuron@develop%nvhpc@22.3+caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl+openmp~profile+report~shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] fnw44jf ^boost@1.79.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] lbajih4 ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] r74vcyb ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7lotjqk ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [+] 4dzxcps ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] atktt2p ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] e5qqxxq ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] jjl6cjc ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] z5kzef6 ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vt2or7v ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - ajxdymq ^flex@2.6.3%nvhpc@22.3+lex~nls arch=linux-rhel7-skylake | |
| - cp3ofsp ^ninja@1.10.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] n6q4vfz ^py-mpi4py@3.1.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] gjm7kkq ^py-numpy@1.19.5%gcc@11.2.0+blas+lapack patches=8a9d5d1b3f145c043b8b04869e7d46c6ff95c3f486d84f69693017c7e6190c7d arch=linux-rhel7-skylake | |
| [^] r5cvgru ^intel-mkl@2020.4.304%gcc@11.2.0~ilp64+shared threads=none arch=linux-rhel7-skylake | |
| [^] h2fsi6i ^py-cython@0.29.24%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] q5n7ofc ^py-pytest-cov@2.8.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] fudvy5v ^py-coverage@5.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 3333cwm ^readline@8.1%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-6s6wcfeanp2mkdib4c3n3ivkcuosopgm) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| ==> cuda@11.6.1 : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-wu42aulcivrayjquerqpqvvjeadgosp2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-3rmq3zxuntsiphthnvty6gtydbmbkwr5) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libiconv-1.16-hxxlex | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/xz-5.2.5-jzpqn5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-ams67cxbq5vc7wiay2ndr2ksce2igbfw) | |
| [+] /usr (external tar-1.28-ir7xtblauhq3vtkpjrl7ou3nzevcsi3u) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libunwind-1.5.0-gc2ivg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/papi-6.0.0.1-vcit7s | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-ucwiakreeghdgbo22kbqqhgnnlwxqtnn) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.79.0-zoxhho (external boost-1.79.0-fnw44jfbxyivagsnavjnk6zdaghmffbt) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/fmt-8.1.1-7lotjq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/catch2-2.13.8-atktt2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/cli11-2.1.1-e5qqxx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/nlohmann-json-3.10.4-jjl6cj | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-ajxdymqhnzqgeuhvk5nu5zfymzq35n6i) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-cp3ofspgkdqaqih5vrhotmdwvkozfswp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/intel-mkl-2020.4.304-rzr3hj (external intel-mkl-2020.4.304-r5cvgrurdnt6y267arsmmmgqi75ouxd2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/readline-8.1-we2frg (external readline-8.1-3333cwmykvahrsdydir4qeyasic3liq6) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/adiak-0.2.1-at3kmf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libxml2-2.9.12-dnxqn2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-r74vcy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pybind11-2.9.1-z5kzef | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/gettext-0.21-iu2b5h | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1.1-lbajih | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.9-vt2or7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-coverage-5.5-fudvy5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-cython-0.29.24-h2fsi6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpi4py-3.1.2-n6q4vf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/elfutils-0.186-p6adpy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-numpy-1.19.5-gjm7kk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/caliper-2.7.0-pfqy3p | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/software/install_gcc-11.2.0-skylake/nmodl-develop-4dzxcp | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-cov-2.8.1-q5n7of | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/software/install_nvhpc-22.3-skylake/coreneuron-develop-fvo2p7 | |
| ==> Installing neuron-develop-uum4rxoougs2qufxjamnm344aykyy7s2 | |
| ==> No binary for neuron-develop-uum4rxoougs2qufxjamnm344aykyy7s2 found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526, but it is owned by 0 | |
| ==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-uum4rxoougs2qufxjamnm344aykyy7s2 | |
| Fetch: 37.66s. Build: 44m 25.31s. Total: 45m 2.97s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/software/install_nvhpc-22.3-skylake/neuron-develop-uum4rx | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/749557/ccache | |
| Primary config: /nvme/bbpcihpcproj12/749557/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Sun Aug 28 16:39:45 2022 | |
| Hits: 707 / 803 (88.04 %) | |
| Direct: 168 / 812 (20.69 %) | |
| Preprocessed: 539 / 638 (84.48 %) | |
| Misses: 96 | |
| Direct: 644 | |
| Preprocessed: 99 | |
| Uncacheable: 121 | |
| Primary storage: | |
| Hits: 1176 / 1618 (72.68 %) | |
| Misses: 442 | |
| Cache size (GB): 0.09 / 0.51 (17.77 %) | |
| Files: 2977 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 98 | |
| Called for preprocessing: 1 | |
| Compilation failed: 3 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1661697585:step_script [0Ksection_start:1661697585:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:neuron:nmodl:nvhpc:omp:legacy-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=10441 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp%3Alegacy-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1661697591:archive_cache [0Ksection_start:1661697591:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=10777 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=338722 responseStatus[0;m=201 Created token[0;m=XhLXxAfe | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=10817 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=338722 responseStatus[0;m=201 Created token[0;m=XhLXxAfe | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=10857 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=338722 responseStatus[0;m=201 Created token[0;m=XhLXxAfe | |
| section_end:1661697592:upload_artifacts_on_success [0Ksection_start:1661697592:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1661697593:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.1.0 (76984217)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1661693907:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1661693907:resolve_secrets [0Ksection_start:1661693907:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.1.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2262014933, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 71526, build ref 567bd21cc895460c3e176d71d24dd82a549835a9, job ID 338706 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J338706_PROD_P112_CP0_C0 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 749531 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J338706_PROD_P112_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --ntasks=2 --jobid=749531 --cpus-per-task=8 --mem=76G | |
| section_end:1661693908:prepare_executor [0Ksection_start:1661693908:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i7n22 via bbpv1.epfl.ch... | |
| section_end:1661693912:prepare_script [0Ksection_start:1661693912:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1661693912:get_sources [0Ksection_start:1661693912:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:nmodl-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=61951 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1661693918:restore_cache [0Ksection_start:1661693918:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (338704)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=63090 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=338704 responseStatus[0;m=200 OK token[0;m=1-aR9YDx | |
| section_end:1661693918:download_artifacts [0Ksection_start:1661693918:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338706/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338706/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338706/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338706/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338706/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526/J338706_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install nmodl%gcc ~legacy-unit | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be 4dzxcpsuksxgtuoesheax4sf76wrhkqb | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/749531/ccache | |
| Primary config: /nvme/bbpcihpcproj12/749531/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Sun Aug 28 15:39:00 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.44 / 0.51 (86.21 %) | |
| Files: 493 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: '4dzxcpsuksxgtuoesheax4sf76wrhkqb' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - nmodl%gcc~legacy-unit | |
| Concretized | |
| -------------------------------- | |
| - 4dzxcps nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - cppb7al ^bison@3.8.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] atktt2p ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 2qmvlfy ^cmake@3.21.4%gcc@11.2.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [^] e5qqxxq ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - 4bt76dp ^flex@2.6.3%gcc@11.2.0+lex~nls arch=linux-rhel7-skylake | |
| [^] 7lotjqk ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| - utrxbc3 ^ninja@1.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] jjl6cjc ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] z5kzef6 ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ciusbmc ^py-setuptools-scm@6.3.2%gcc@11.2.0+toml arch=linux-rhel7-skylake | |
| [^] hmcew6w ^py-tomli@1.2.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] sxd7srs ^py-pip@21.1.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vt2or7v ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] r74vcyb ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-cppb7alftvhxbedsuxqv72z2thjuoizw) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-2qmvlfyylrv3t5ankluyr5cqey2nlfzd) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-4bt76dpxbix6ep4qtz3mv5i2iddilv53) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-utrxbc3aohnru5eynalc3hyv4ca4jqte) | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/nlohmann-json-3.10.4-jjl6cj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/fmt-8.1.1-7lotjq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/cli11-2.1.1-e5qqxx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/catch2-2.13.8-atktt2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-r74vcy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pybind11-2.9.1-z5kzef | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pip-21.1.2-sxd7sr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.9-vt2or7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-tomli-1.2.1-hmcew6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-scm-6.3.2-ciusbm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| ==> Installing nmodl-develop-4dzxcpsuksxgtuoesheax4sf76wrhkqb | |
| ==> No binary for nmodl-develop-4dzxcpsuksxgtuoesheax4sf76wrhkqb found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526, but it is owned by 0 | |
| ==> No patches needed for nmodl | |
| ==> nmodl: Executing phase: 'cmake' | |
| ==> nmodl: Executing phase: 'build' | |
| ==> nmodl: Executing phase: 'install' | |
| ==> nmodl: Successfully installed nmodl-develop-4dzxcpsuksxgtuoesheax4sf76wrhkqb | |
| Fetch: 59.23s. Build: 1m 17.72s. Total: 2m 16.94s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/software/install_gcc-11.2.0-skylake/nmodl-develop-4dzxcp | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/749531/ccache | |
| Primary config: /nvme/bbpcihpcproj12/749531/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Sun Aug 28 15:42:01 2022 | |
| Hits: 131 / 133 (98.50 %) | |
| Direct: 28 / 133 (21.05 %) | |
| Preprocessed: 103 / 105 (98.10 %) | |
| Misses: 2 | |
| Direct: 105 | |
| Preprocessed: 2 | |
| Uncacheable: 26 | |
| Primary storage: | |
| Hits: 159 / 266 (59.77 %) | |
| Misses: 107 | |
| Cache size (GB): 0.44 / 0.51 (86.23 %) | |
| Files: 497 | |
| Uncacheable: | |
| Called for linking: 25 | |
| No input file: 1 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1661694122:step_script [0Ksection_start:1661694122:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:nmodl-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=72694 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Anmodl-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1661694143:archive_cache [0Ksection_start:1661694143:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=72915 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=338706 responseStatus[0;m=201 Created token[0;m=1-aR9YDx | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=72976 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=338706 responseStatus[0;m=201 Created token[0;m=1-aR9YDx | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=73037 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=338706 responseStatus[0;m=201 Created token[0;m=1-aR9YDx | |
| section_end:1661694144:upload_artifacts_on_success [0Ksection_start:1661694144:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1661694145:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| ! |
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| [0KRunning with gitlab-runner 15.1.0 (76984217)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1661693825:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1661693825:resolve_secrets [0Ksection_start:1661693825:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.1.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor632242590, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 71526, build ref 567bd21cc895460c3e176d71d24dd82a549835a9, job ID 338704 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526, optional exclusive flag , optional cpus per task flag --cpus-per-task=6, optional qos flag | |
| A slurm job will be created with name GL_J338704_PROD_P112_CP0_C0 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 749530 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M --job-name=GL_J338704_PROD_P112_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --ntasks=1 --jobid=749530 --cpus-per-task=6 --mem=30750M | |
| section_end:1661693827:prepare_executor [0Ksection_start:1661693827:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i7n22 via bbpv1.epfl.ch... | |
| section_end:1661693829:prepare_script [0Ksection_start:1661693829:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1661693830:get_sources [0Ksection_start:1661693830:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ if [[ -n "${SPACK_ENV_FILE_URL}" && "${PARSE_GITHUB_PR_DESCRIPTIONS,,}" == "true" ]]; then[0;m | |
| [32;1m$ cat > parse_description.py << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ cat parse_description.py[0;m | |
| import os | |
| import re | |
| import requests | |
| pr_info = requests.get("https://api.github.com/repos/{}/pulls/{}".format( | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_TARGET_REPOSITORY'], | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_IID']), | |
| headers={'Accept': 'application/vnd.github.v3+json'}) | |
| pr_body = pr_info.json()["body"] | |
| # match something like NEURON_BRANCH=foo/bar | |
| pat = re.compile('^([A-Z0-9_]+)_([A-Z]+)=([A-Z0-9\-\_\/\+]+)$', re.IGNORECASE) | |
| def parse_term(m): | |
| ref_type = m.group(2).lower() | |
| if ref_type not in {'branch', 'tag', 'ref'}: return | |
| print(m.group(1).upper() + '_' + ref_type.upper() + '=' + m.group(3)) | |
| if pr_body is not None: | |
| for pr_body_line in pr_body.splitlines(): | |
| if not pr_body_line.startswith('CI_BRANCHES:'): continue | |
| for config_term in pr_body_line[12:].split(','): | |
| pat.sub(parse_term, config_term) | |
| [32;1m$ (module load unstable python-dev; python parse_description.py) > input_variables.env[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ else[0;m | |
| [32;1m$ cat input_variables.env[0;m | |
| NEURON_BRANCH=olupton/coreneuron-gpu-dynamic-loading | |
| SPACK_BRANCH=olupton/coreneuron-gpu-dynamic | |
| [32;1m$ for var_to_unset in $(sed 's/^\(.*\?\)_\(BRANCH\|COMMIT\|TAG\)=.*$/\1_BRANCH\n\1_COMMIT\n\1_TAG/' input_variables.env); do # collapsed multi-line command[0;m | |
| Unsetting NEURON_BRANCH | |
| Unsetting SPACK_BRANCH | |
| [32;1m$ set -o allexport[0;m | |
| [32;1m$ . input_variables.env[0;m | |
| [32;1m$ set +o allexport[0;m | |
| [32;1m$ unset MODULEPATH[0;m | |
| [32;1m$ . /gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config/modules.sh[0;m | |
| [32;1m$ echo "MODULEPATH=${MODULEPATH}" > spack_clone_variables.env[0;m | |
| [32;1m$ echo Preparing to clone Spack into ${PWD}[0;m | |
| Preparing to clone Spack into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338704 | |
| [32;1m$ if [[ -z "${SPACK_BRANCH}" && ( -n "${SPACK_COMMIT}" || -n "${SPACK_TAG}" ) ]]; then[0;m | |
| [32;1m$ echo Checking out the ${SPACK_BRANCH} of Spack...[0;m | |
| Checking out the olupton/coreneuron-gpu-dynamic of Spack... | |
| [32;1m$ module load unstable git[0;m | |
| [32;1m$ git clone -c feature.manyFiles=true --depth 1 --single-branch --branch ${SPACK_BRANCH} ${SPACK_URL} spack[0;m | |
| Cloning into 'spack'... | |
| Updating files: 16% (1502/9134) Updating files: 17% (1553/9134) Updating files: 18% (1645/9134) Updating files: 19% (1736/9134) Updating files: 20% (1827/9134) Updating files: 21% (1919/9134) Updating files: 22% (2010/9134) Updating files: 23% (2101/9134) Updating files: 24% (2193/9134) Updating files: 25% (2284/9134) Updating files: 26% (2375/9134) Updating files: 27% (2467/9134) Updating files: 28% (2558/9134) Updating files: 29% (2649/9134) Updating files: 29% (2707/9134) Updating files: 30% (2741/9134) Updating files: 31% (2832/9134) Updating files: 32% (2923/9134) Updating files: 33% (3015/9134) Updating files: 34% (3106/9134) Updating files: 35% (3197/9134) Updating files: 36% (3289/9134) Updating files: 37% (3380/9134) Updating files: 38% (3471/9134) Updating files: 39% (3563/9134) Updating files: 40% (3654/9134) Updating files: 41% (3745/9134) Updating files: 42% (3837/9134) Updating files: 43% (3928/9134) Updating files: 44% (4019/9134) Updating files: 45% (4111/9134) Updating files: 46% (4202/9134) Updating files: 47% (4293/9134) Updating files: 48% (4385/9134) Updating files: 49% (4476/9134) Updating files: 50% (4567/9134) Updating files: 51% (4659/9134) Updating files: 52% (4750/9134) Updating files: 53% (4842/9134) Updating files: 54% (4933/9134) Updating files: 55% (5024/9134) Updating files: 55% (5077/9134) Updating files: 56% (5116/9134) Updating files: 57% (5207/9134) Updating files: 58% (5298/9134) Updating files: 59% (5390/9134) Updating files: 60% (5481/9134) Updating files: 61% (5572/9134) Updating files: 62% (5664/9134) Updating files: 63% (5755/9134) Updating files: 64% (5846/9134) Updating files: 65% (5938/9134) Updating files: 66% (6029/9134) Updating files: 67% (6120/9134) Updating files: 68% (6212/9134) Updating files: 69% (6303/9134) Updating files: 70% (6394/9134) Updating files: 71% (6486/9134) Updating files: 72% (6577/9134) Updating files: 73% (6668/9134) Updating files: 74% (6760/9134) Updating files: 75% (6851/9134) Updating files: 76% (6942/9134) Updating files: 77% (7034/9134) Updating files: 78% (7125/9134) Updating files: 79% (7216/9134) Updating files: 80% (7308/9134) Updating files: 80% (7346/9134) Updating files: 81% (7399/9134) Updating files: 82% (7490/9134) Updating files: 83% (7582/9134) Updating files: 84% (7673/9134) Updating files: 85% (7764/9134) Updating files: 86% (7856/9134) Updating files: 87% (7947/9134) Updating files: 88% (8038/9134) Updating files: 89% (8130/9134) Updating files: 90% (8221/9134) Updating files: 91% (8312/9134) Updating files: 92% (8404/9134) Updating files: 93% (8495/9134) Updating files: 94% (8586/9134) Updating files: 95% (8678/9134) Updating files: 96% (8769/9134) Updating files: 97% (8860/9134) Updating files: 98% (8952/9134) Updating files: 99% (9043/9134) Updating files: 100% (9134/9134) Updating files: 100% (9134/9134), done. | |
| [32;1m$ export SPACK_ROOT=${PWD}/spack[0;m | |
| [32;1m$ export SPACK_USER_CACHE_PATH="${CI_BUILDS_DIR}"[0;m | |
| [32;1m$ export SPACK_SYSTEM_CONFIG_PATH="/gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config"[0;m | |
| [32;1m$ echo "SPACK_ROOT=${SPACK_ROOT}" >> spack_clone_variables.env[0;m | |
| [32;1m$ echo "SPACK_USER_CACHE_PATH=${SPACK_USER_CACHE_PATH}" >> spack_clone_variables.env[0;m | |
| [32;1m$ echo "SPACK_SYSTEM_CONFIG_PATH=${SPACK_SYSTEM_CONFIG_PATH}" >> spack_clone_variables.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526/J338704_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ env -0 | sed -nz '/^CUSTOM_ENV_/d;/^[^=]\+_\(BRANCH\|COMMIT\|TAG\)=.\+/p' | xargs -0t spack configure-pipeline --ignore-packages CI_BUILD CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK ${SPACK_SETUP_IGNORE_PACKAGE_VARIABLES} --write-commit-file=commit-mapping.env[0;m | |
| spack configure-pipeline --ignore-packages CI_BUILD CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK --write-commit-file=commit-mapping.env CI_COMMIT_BRANCH=pramodk/exclude-global-vars GITLAB_PIPELINES_BRANCH=main NEURON_BRANCH=olupton/coreneuron-gpu-dynamic-loading NMODL_BRANCH=master SPACK_BRANCH=olupton/coreneuron-gpu-dynamic CI_DEFAULT_BRANCH=master CORENEURON_COMMIT=567bd21cc895460c3e176d71d24dd82a549835a9 | |
| ==> CI_COMMIT: ignoring CI_COMMIT_BRANCH=pramodk/exclude-global-vars | |
| ==> GITLAB_PIPELINES: ignoring GITLAB_PIPELINES_BRANCH=main | |
| ==> SPACK: ignoring SPACK_BRANCH=olupton/coreneuron-gpu-dynamic | |
| ==> CI_DEFAULT: ignoring CI_DEFAULT_BRANCH=master | |
| ==> neuron: resolved branch olupton/coreneuron-gpu-dynamic-loading to 1ae331a4beb21f2dd428361f61f0f1b528588e86 | |
| ==> nmodl: resolved branch master to 4f45a1c8a9b99c64127ea795eb12952e754b775c | |
| ==> neuron@develop: remove branch/commit/tag | |
| ==> neuron@develop: use commit="1ae331a4beb21f2dd428361f61f0f1b528588e86" | |
| ==> neuron@develop: add preferred=True | |
| ==> nmodl@develop: remove branch/commit/tag | |
| ==> nmodl@develop: use commit="4f45a1c8a9b99c64127ea795eb12952e754b775c" | |
| ==> nmodl@develop: add preferred=True | |
| ==> coreneuron@develop: remove branch/commit/tag | |
| ==> coreneuron@develop: use commit="567bd21cc895460c3e176d71d24dd82a549835a9" | |
| ==> coreneuron@develop: add preferred=True | |
| [32;1m$ (cd "${SPACK_ROOT}" && git diff)[0;m | |
| diff --git a/bluebrain/repo-bluebrain/packages/coreneuron/package.py b/bluebrain/repo-bluebrain/packages/coreneuron/package.py | |
| index 1493af2..314f05b 100644 | |
| --- a/bluebrain/repo-bluebrain/packages/coreneuron/package.py | |
| +++ b/bluebrain/repo-bluebrain/packages/coreneuron/package.py | |
| @@ -20,7 +20,7 @@ class Coreneuron(CMakePackage): | |
| # This simplifies testing the gitlab-pipelines repository: | |
| git = "git@bbpgitlab.epfl.ch:hpc/coreneuron.git" | |
| - version('develop', branch='master') | |
| + version('develop', preferred=True, commit='567bd21cc895460c3e176d71d24dd82a549835a9') # old: branch='master' | |
| version('8.2.0', tag='8.2.0') | |
| # 1.0.1 > 1.0.0.20210519 > 1.0 as far as Spack is concerned | |
| version('1.0.0.20220304', commit='2d08705') | |
| diff --git a/bluebrain/repo-bluebrain/packages/nmodl/package.py b/bluebrain/repo-bluebrain/packages/nmodl/package.py | |
| index a79f28b..b922447 100644 | |
| --- a/bluebrain/repo-bluebrain/packages/nmodl/package.py | |
| +++ b/bluebrain/repo-bluebrain/packages/nmodl/package.py | |
| @@ -14,7 +14,7 @@ class Nmodl(CMakePackage): | |
| git = "https://github.com/BlueBrain/nmodl.git" | |
| # 0.3.1 > 0.3.0.20220110 > 0.3.0 > 0.3b > 0.3 to Spack | |
| - version("develop", branch="master", submodules=True) | |
| + version('develop', preferred=True, commit='4f45a1c8a9b99c64127ea795eb12952e754b775c', submodules=True) # old: branch="master" | |
| version("llvm", branch="llvm", submodules=True) | |
| version("0.4.0", tag="0.4") | |
| # This is the merge commit of #875, which allows catch2 etc. to be dependencies | |
| diff --git a/bluebrain/repo-patches/packages/neuron/package.py b/bluebrain/repo-patches/packages/neuron/package.py | |
| index 872067a..2a2f802 100644 | |
| --- a/bluebrain/repo-patches/packages/neuron/package.py | |
| +++ b/bluebrain/repo-patches/packages/neuron/package.py | |
| @@ -30,7 +30,7 @@ class Neuron(CMakePackage): | |
| # Patch for recent CMake versions that don't identify NVHPC as PGI | |
| patch("patch-v800-cmake-nvhpc.patch", when="@8.0.0%nvhpc^cmake@3.20:") | |
| - version("develop", branch="master") | |
| + version('develop', preferred=True, commit='1ae331a4beb21f2dd428361f61f0f1b528588e86') # old: branch="master" | |
| version("8.2.1", tag="8.2.1") | |
| version("8.2.0", tag="8.2.0") | |
| version("8.1.0", tag="8.1.0") | |
| [32;1m$ cat commit-mapping.env[0;m | |
| NEURON_COMMIT=1ae331a4beb21f2dd428361f61f0f1b528588e86 | |
| NMODL_COMMIT=4f45a1c8a9b99c64127ea795eb12952e754b775c | |
| CORENEURON_COMMIT=567bd21cc895460c3e176d71d24dd82a549835a9 | |
| [32;1m$ echo "SPACK_BRANCH=${SPACK_BRANCH}" >> commit-mapping.env[0;m | |
| [32;1m$ echo "SPACK_DEPLOYMENT_SUFFIX=${SPACK_DEPLOYMENT_SUFFIX}" >> commit-mapping.env[0;m | |
| [32;1m$ cat commit-mapping.env >> spack_clone_variables.env[0;m | |
| [32;1m$ spack spec -IL ninja[0;m | |
| Input spec | |
| -------------------------------- | |
| - ninja | |
| Concretized | |
| -------------------------------- | |
| ==> Bootstrapping clingo from pre-built binaries | |
| - utrxbc3aohnru5eynalc3hyv4ca4jqte ninja@1.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [32;1m$ echo "SPACK_SETUP_COMMIT_MAPPING_URL=${CI_API_V4_URL}/projects/${CI_PROJECT_ID}/jobs/${CI_JOB_ID}/artifacts/commit-mapping.env" >> spack_clone_variables.env[0;m | |
| [32;1m$ spack config --scope site add "config:ccache:true"[0;m | |
| [32;1m$ echo "SPACK_USE_CCACHE=true" >> spack_clone_variables.env[0;m | |
| section_end:1661693902:step_script [0Ksection_start:1661693902:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=61120 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| commit-mapping.env: found 1 matching files and directories[0;m | |
| input_variables.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=338704 responseStatus[0;m=201 Created token[0;m=E5Ucadgu | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=61141 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=338704 responseStatus[0;m=201 Created token[0;m=E5Ucadgu | |
| section_end:1661693903:upload_artifacts_on_success [0Ksection_start:1661693903:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1661693903:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.1.0 (76984217)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1661694072:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1661694072:resolve_secrets [0Ksection_start:1661694072:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.1.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1557799651, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 71526, build ref 567bd21cc895460c3e176d71d24dd82a549835a9, job ID 338727 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J338727_PROD_P112_CP3_C3 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 749540 | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J338727_PROD_P112_CP3_C3 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --ntasks=8 --jobid=749540 --cpus-per-task=1 --mem=30750M | |
| section_end:1661694077:prepare_executor [0Ksection_start:1661694077:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i3n0 via bbpv1.epfl.ch... | |
| section_end:1661694080:prepare_script [0Ksection_start:1661694080:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1661694081:get_sources [0Ksection_start:1661694081:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:mod2c:nvhpc:acc:debug:unified (338710)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=214728 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=338710 responseStatus[0;m=200 OK token[0;m=MBsymz3X | |
| section_end:1661694082:download_artifacts [0Ksection_start:1661694082:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i7n22 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220828-1341 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338710/spack-build/spack-stage-coreneuron-develop-cftsmtwawgvxmq75oevgdxdn6tjvkaer/spack-build-cftsmtw | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: test-solver | |
| Start 6: lfp_test | |
| Start 7: ring_TEST | |
| 1/20 Test #1: cmd_interface_test ..................... Passed 0.22 sec | |
| Start 20: reporting_1 | |
| 2/20 Test #4: queuing_test ........................... Passed 0.25 sec | |
| 3/20 Test #6: lfp_test ............................... Passed 0.34 sec | |
| Start 8: ring_binqueue_TEST | |
| 4/20 Test #3: alignment_test ......................... Passed 2.18 sec | |
| 5/20 Test #2: interleave_info_constructor_test ....... Passed 2.22 sec | |
| Start 9: ring_multisend_TEST | |
| 6/20 Test #20: reporting_1 ............................ Passed 3.79 sec | |
| 7/20 Test #5: test-solver ............................ Passed 4.30 sec | |
| Start 10: ring_spike_buffer_TEST | |
| 8/20 Test #7: ring_TEST .............................. Passed 34.19 sec | |
| Start 11: ring_gap_TEST | |
| 9/20 Test #8: ring_binqueue_TEST ..................... Passed 34.58 sec | |
| Start 12: ring_gap_binqueue_TEST | |
| 10/20 Test #9: ring_multisend_TEST .................... Passed 33.38 sec | |
| Start 13: ring_gap_multisend_TEST | |
| 11/20 Test #10: ring_spike_buffer_TEST ................. Passed 33.34 sec | |
| Start 14: ring_permute1_TEST | |
| 12/20 Test #14: ring_permute1_TEST ..................... Passed 32.08 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/20 Test #11: ring_gap_TEST .......................... Passed 39.83 sec | |
| Start 16: ring_permute2_TEST | |
| 14/20 Test #12: ring_gap_binqueue_TEST ................. Passed 39.54 sec | |
| Start 17: ring_gap_permute2_TEST | |
| 15/20 Test #13: ring_gap_multisend_TEST ................ Passed 39.46 sec | |
| Start 18: ring_permute2_cudaInterface_TEST | |
| 16/20 Test #16: ring_permute2_TEST ..................... Passed 28.59 sec | |
| Start 19: ring_gap_permute2_cudaInterface_TEST | |
| 17/20 Test #18: ring_permute2_cudaInterface_TEST ....... Passed 29.08 sec | |
| 18/20 Test #15: ring_gap_permute1_TEST ................. Passed 36.58 sec | |
| 19/20 Test #17: ring_gap_permute2_TEST ................. Passed 35.37 sec | |
| 20/20 Test #19: ring_gap_permute2_cudaInterface_TEST ... Passed 17.12 sec | |
| 100% tests passed, 0 tests failed out of 20 | |
| Total Test time (real) = 119.80 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1661694231:step_script [0Ksection_start:1661694231:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=217772 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=338727 responseStatus[0;m=201 Created token[0;m=MBsymz3X | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=217820 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=338727 responseStatus[0;m=201 Created token[0;m=MBsymz3X | |
| section_end:1661694232:upload_artifacts_on_success [0Ksection_start:1661694232:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1661694233:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.1.0 (76984217)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1661694298:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1661694298:resolve_secrets [0Ksection_start:1661694298:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.1.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1452856455, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 71526, build ref 567bd21cc895460c3e176d71d24dd82a549835a9, job ID 338725 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J338725_PROD_P112_CP4_C5 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 749550 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J338725_PROD_P112_CP4_C5 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --ntasks=8 --jobid=749550 --cpus-per-task=1 --mem=30750M | |
| section_end:1661694301:prepare_executor [0Ksection_start:1661694301:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i7n22 via bbpv1.epfl.ch... | |
| section_end:1661694305:prepare_script [0Ksection_start:1661694305:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1661694306:get_sources [0Ksection_start:1661694306:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:intel:debug:legacy (338708)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=83082 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=338708 responseStatus[0;m=200 OK token[0;m=bHmAxTA2 | |
| section_end:1661694307:download_artifacts [0Ksection_start:1661694307:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i7n22 | |
| Build name: Linux-icpc | |
| Create new tag: 20220828-1346 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338708/spack-build/spack-stage-coreneuron-develop-jfrkyskialbeoksqkfbq3l42w7o76waj/spack-build-jfrkysk | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: test-solver | |
| Start 6: lfp_test | |
| Start 7: ring_TEST | |
| 1/18 Test #3: alignment_test ..................... Passed 0.67 sec | |
| Start 18: reporting_1 | |
| 2/18 Test #1: cmd_interface_test ................. Passed 0.70 sec | |
| 3/18 Test #2: interleave_info_constructor_test ... Passed 0.70 sec | |
| Start 8: ring_binqueue_TEST | |
| 4/18 Test #4: queuing_test ....................... Passed 0.72 sec | |
| 5/18 Test #6: lfp_test ........................... Passed 0.76 sec | |
| Start 9: ring_multisend_TEST | |
| 6/18 Test #5: test-solver ........................ Passed 1.48 sec | |
| 7/18 Test #7: ring_TEST .......................... Passed 3.16 sec | |
| Start 10: ring_spike_buffer_TEST | |
| 8/18 Test #18: reporting_1 ........................ Passed 3.08 sec | |
| Start 11: ring_gap_TEST | |
| 9/18 Test #8: ring_binqueue_TEST ................. Passed 3.40 sec | |
| Start 12: ring_gap_binqueue_TEST | |
| 10/18 Test #9: ring_multisend_TEST ................ Passed 3.41 sec | |
| Start 13: ring_gap_multisend_TEST | |
| 11/18 Test #10: ring_spike_buffer_TEST ............. Passed 2.76 sec | |
| Start 14: ring_permute0_TEST | |
| 12/18 Test #11: ring_gap_TEST ...................... Passed 2.69 sec | |
| Start 15: ring_gap_permute0_TEST | |
| 13/18 Test #12: ring_gap_binqueue_TEST ............. Passed 2.80 sec | |
| Start 16: ring_permute1_TEST | |
| 14/18 Test #13: ring_gap_multisend_TEST ............ Passed 2.79 sec | |
| Start 17: ring_gap_permute1_TEST | |
| 15/18 Test #14: ring_permute0_TEST ................. Passed 2.71 sec | |
| 16/18 Test #15: ring_gap_permute0_TEST ............. Passed 2.60 sec | |
| 17/18 Test #16: ring_permute1_TEST ................. Passed 2.67 sec | |
| 18/18 Test #17: ring_gap_permute1_TEST ............. Passed 2.71 sec | |
| 100% tests passed, 0 tests failed out of 18 | |
| Total Test time (real) = 9.78 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1661694386:step_script [0Ksection_start:1661694386:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=86423 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=338725 responseStatus[0;m=201 Created token[0;m=bHmAxTA2 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=86456 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=338725 responseStatus[0;m=201 Created token[0;m=bHmAxTA2 | |
| section_end:1661694387:upload_artifacts_on_success [0Ksection_start:1661694387:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1661694388:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 15.1.0 (76984217)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1661694540:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1661694540:resolve_secrets [0Ksection_start:1661694540:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.1.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2192466017, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 71526, build ref 567bd21cc895460c3e176d71d24dd82a549835a9, job ID 338729 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J338729_PROD_P112_CP9_C10 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 749555 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J338729_PROD_P112_CP9_C10 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --ntasks=8 --jobid=749555 --cpus-per-task=1 --mem=30750M | |
| section_end:1661694541:prepare_executor [0Ksection_start:1661694541:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i3n0 via bbpv1.epfl.ch... | |
| section_end:1661694544:prepare_script [0Ksection_start:1661694544:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1661694545:get_sources [0Ksection_start:1661694545:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:nvhpc:acc:debug:legacy (338712)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=220003 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=338712 responseStatus[0;m=200 OK token[0;m=KJd4casY | |
| section_end:1661694546:download_artifacts [0Ksection_start:1661694546:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i6n29 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220828-1349 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338712/spack-build/spack-stage-coreneuron-develop-js5laijjlbd563352whng5sdc5aazwvb/spack-build-js5laij | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: test-solver | |
| Start 6: lfp_test | |
| Start 7: ring_TEST | |
| 1/20 Test #1: cmd_interface_test ..................... Passed 0.13 sec | |
| Start 20: reporting_1 | |
| 2/20 Test #3: alignment_test ......................... Passed 0.14 sec | |
| 3/20 Test #6: lfp_test ............................... Passed 0.16 sec | |
| Start 8: ring_binqueue_TEST | |
| 4/20 Test #4: queuing_test ........................... Passed 0.23 sec | |
| 5/20 Test #2: interleave_info_constructor_test ....... Passed 0.26 sec | |
| Start 9: ring_multisend_TEST | |
| 6/20 Test #20: reporting_1 ............................ Passed 2.91 sec | |
| 7/20 Test #5: test-solver ............................ Passed 3.94 sec | |
| Start 10: ring_spike_buffer_TEST | |
| 8/20 Test #7: ring_TEST .............................. Passed 37.84 sec | |
| Start 11: ring_gap_TEST | |
| 9/20 Test #8: ring_binqueue_TEST ..................... Passed 38.30 sec | |
| Start 12: ring_gap_binqueue_TEST | |
| 10/20 Test #9: ring_multisend_TEST .................... Passed 38.64 sec | |
| Start 13: ring_gap_multisend_TEST | |
| 11/20 Test #10: ring_spike_buffer_TEST ................. Passed 37.22 sec | |
| Start 14: ring_permute1_TEST | |
| 12/20 Test #14: ring_permute1_TEST ..................... Passed 37.26 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/20 Test #11: ring_gap_TEST .......................... Passed 48.51 sec | |
| Start 16: ring_permute2_TEST | |
| 14/20 Test #12: ring_gap_binqueue_TEST ................. Passed 48.81 sec | |
| Start 17: ring_gap_permute2_TEST | |
| 15/20 Test #13: ring_gap_multisend_TEST ................ Passed 48.86 sec | |
| Start 18: ring_permute2_cudaInterface_TEST | |
| 16/20 Test #16: ring_permute2_TEST ..................... Passed 35.46 sec | |
| Start 19: ring_gap_permute2_cudaInterface_TEST | |
| 17/20 Test #18: ring_permute2_cudaInterface_TEST ....... Passed 36.25 sec | |
| 18/20 Test #15: ring_gap_permute1_TEST ................. Passed 50.82 sec | |
| 19/20 Test #17: ring_gap_permute2_TEST ................. Passed 51.53 sec | |
| 20/20 Test #19: ring_gap_permute2_cudaInterface_TEST ... Passed 44.72 sec | |
| 100% tests passed, 0 tests failed out of 20 | |
| Total Test time (real) = 166.60 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1661694740:step_script [0Ksection_start:1661694740:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=222539 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=338729 responseStatus[0;m=201 Created token[0;m=KJd4casY | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=222637 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=338729 responseStatus[0;m=201 Created token[0;m=KJd4casY | |
| section_end:1661694742:upload_artifacts_on_success [0Ksection_start:1661694742:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1661694743:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 15.1.0 (76984217)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1661694492:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1661694492:resolve_secrets [0Ksection_start:1661694492:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.1.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor4008440660, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 71526, build ref 567bd21cc895460c3e176d71d24dd82a549835a9, job ID 338732 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J338732_PROD_P112_CP5_C6 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 749553 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J338732_PROD_P112_CP5_C6 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --ntasks=8 --jobid=749553 --cpus-per-task=1 --mem=30750M | |
| section_end:1661694494:prepare_executor [0Ksection_start:1661694494:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i3n0 via bbpv1.epfl.ch... | |
| section_end:1661694495:prepare_script [0Ksection_start:1661694495:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1661694496:get_sources [0Ksection_start:1661694496:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:nvhpc:omp:debug (338715)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=218830 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=338715 responseStatus[0;m=200 OK token[0;m=Fwe59Asi | |
| section_end:1661694496:download_artifacts [0Ksection_start:1661694496:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i6n32 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220828-1348 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338715/spack-build/spack-stage-coreneuron-develop-jxxwi7tb7ywd3tqe6pftnl5niadymxtw/spack-build-jxxwi7t | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: test-solver | |
| Start 6: lfp_test | |
| Start 7: ring_TEST | |
| 1/20 Test #1: cmd_interface_test ..................... Passed 0.18 sec | |
| Start 20: reporting_1 | |
| 2/20 Test #2: interleave_info_constructor_test ....... Passed 0.17 sec | |
| 3/20 Test #4: queuing_test ........................... Passed 0.16 sec | |
| Start 8: ring_binqueue_TEST | |
| 4/20 Test #3: alignment_test ......................... Passed 0.22 sec | |
| 5/20 Test #6: lfp_test ............................... Passed 0.27 sec | |
| Start 9: ring_multisend_TEST | |
| 6/20 Test #20: reporting_1 ............................ Passed 3.48 sec | |
| 7/20 Test #5: test-solver ............................ Passed 3.90 sec | |
| Start 10: ring_spike_buffer_TEST | |
| 8/20 Test #7: ring_TEST .............................. Passed 36.56 sec | |
| Start 11: ring_gap_TEST | |
| 9/20 Test #8: ring_binqueue_TEST ..................... Passed 41.90 sec | |
| Start 12: ring_gap_binqueue_TEST | |
| 10/20 Test #9: ring_multisend_TEST .................... Passed 42.89 sec | |
| Start 13: ring_gap_multisend_TEST | |
| 11/20 Test #10: ring_spike_buffer_TEST ................. Passed 41.53 sec | |
| Start 14: ring_permute1_TEST | |
| 12/20 Test #14: ring_permute1_TEST ..................... Passed 94.46 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/20 Test #11: ring_gap_TEST .......................... Passed 105.11 sec | |
| Start 16: ring_permute2_TEST | |
| 14/20 Test #12: ring_gap_binqueue_TEST ................. Passed 114.46 sec | |
| Start 17: ring_gap_permute2_TEST | |
| 15/20 Test #13: ring_gap_multisend_TEST ................ Passed 119.52 sec | |
| Start 18: ring_permute2_cudaInterface_TEST | |
| 16/20 Test #16: ring_permute2_TEST ..................... Passed 92.10 sec | |
| Start 19: ring_gap_permute2_cudaInterface_TEST | |
| 17/20 Test #18: ring_permute2_cudaInterface_TEST ....... Passed 83.53 sec | |
| 18/20 Test #15: ring_gap_permute1_TEST ................. Passed 107.68 sec | |
| 19/20 Test #17: ring_gap_permute2_TEST ................. Passed 108.27 sec | |
| 20/20 Test #19: ring_gap_permute2_cudaInterface_TEST ... Passed 103.64 sec | |
| 100% tests passed, 0 tests failed out of 20 | |
| Total Test time (real) = 337.48 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1661694862:step_script [0Ksection_start:1661694862:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=225455 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=338732 responseStatus[0;m=201 Created token[0;m=Fwe59Asi | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=225487 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=338732 responseStatus[0;m=201 Created token[0;m=Fwe59Asi | |
| section_end:1661694863:upload_artifacts_on_success [0Ksection_start:1661694863:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1661694864:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.1.0 (76984217)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1661694733:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1661694733:resolve_secrets [0Ksection_start:1661694733:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.1.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor4057032903, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 71526, build ref 567bd21cc895460c3e176d71d24dd82a549835a9, job ID 338731 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J338731_PROD_P112_CP11_C12 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 749559 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J338731_PROD_P112_CP11_C12 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --ntasks=8 --jobid=749559 --cpus-per-task=1 --mem=30750M | |
| section_end:1661694736:prepare_executor [0Ksection_start:1661694736:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i3n0 via bbpv1.epfl.ch... | |
| section_end:1661694739:prepare_script [0Ksection_start:1661694739:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1661694741:get_sources [0Ksection_start:1661694741:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:nvhpc:omp:legacy (338714)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=222669 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=338714 responseStatus[0;m=200 OK token[0;m=LSGc8mag | |
| section_end:1661694742:download_artifacts [0Ksection_start:1661694742:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i6n29 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220828-1352 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338714/spack-build/spack-stage-coreneuron-develop-fvo2p7thv6sxw3npnc3ku63mdpvkocdm/spack-build-fvo2p7t | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: test-solver | |
| Start 6: lfp_test | |
| Start 7: ring_TEST | |
| 1/20 Test #1: cmd_interface_test ..................... Passed 0.45 sec | |
| Start 20: reporting_1 | |
| 2/20 Test #2: interleave_info_constructor_test ....... Passed 0.47 sec | |
| 3/20 Test #3: alignment_test ......................... Passed 0.52 sec | |
| Start 8: ring_binqueue_TEST | |
| 4/20 Test #4: queuing_test ........................... Passed 0.52 sec | |
| 5/20 Test #6: lfp_test ............................... Passed 0.52 sec | |
| Start 9: ring_multisend_TEST | |
| 6/20 Test #5: test-solver ............................ Passed 2.59 sec | |
| 7/20 Test #20: reporting_1 ............................ Passed 3.23 sec | |
| Start 10: ring_spike_buffer_TEST | |
| 8/20 Test #7: ring_TEST .............................. Passed 82.05 sec | |
| Start 11: ring_gap_TEST | |
| 9/20 Test #8: ring_binqueue_TEST ..................... Passed 83.27 sec | |
| Start 12: ring_gap_binqueue_TEST | |
| 10/20 Test #9: ring_multisend_TEST .................... Passed 83.48 sec | |
| Start 13: ring_gap_multisend_TEST | |
| 11/20 Test #10: ring_spike_buffer_TEST ................. Passed 82.09 sec | |
| Start 14: ring_permute1_TEST | |
| 12/20 Test #14: ring_permute1_TEST ..................... Passed 44.77 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/20 Test #11: ring_gap_TEST .......................... Passed 55.17 sec | |
| Start 16: ring_permute2_TEST | |
| 14/20 Test #13: ring_gap_multisend_TEST ................ Passed 53.44 sec | |
| Start 17: ring_gap_permute2_TEST | |
| 15/20 Test #12: ring_gap_binqueue_TEST ................. Passed 53.76 sec | |
| Start 18: ring_permute2_cudaInterface_TEST | |
| 16/20 Test #15: ring_gap_permute1_TEST ................. Passed 9.16 sec | |
| Start 19: ring_gap_permute2_cudaInterface_TEST | |
| 17/20 Test #16: ring_permute2_TEST ..................... Passed 30.02 sec | |
| 18/20 Test #18: ring_permute2_cudaInterface_TEST ....... Passed 33.30 sec | |
| 19/20 Test #17: ring_gap_permute2_TEST ................. Passed 37.74 sec | |
| 20/20 Test #19: ring_gap_permute2_cudaInterface_TEST ... Passed 35.76 sec | |
| 100% tests passed, 0 tests failed out of 20 | |
| Total Test time (real) = 175.48 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1661694946:step_script [0Ksection_start:1661694946:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=226365 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=338731 responseStatus[0;m=201 Created token[0;m=LSGc8mag | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=226397 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=338731 responseStatus[0;m=201 Created token[0;m=LSGc8mag | |
| section_end:1661694948:upload_artifacts_on_success [0Ksection_start:1661694948:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1661694948:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.1.0 (76984217)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1661695938:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1661695938:resolve_secrets [0Ksection_start:1661695938:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.1.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor649476033, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 71526, build ref 567bd21cc895460c3e176d71d24dd82a549835a9, job ID 338734 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J338734_PROD_P112_CP0_C0 | |
| Job parameters: memory=76G, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 749652 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=76G --job-name=GL_J338734_PROD_P112_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --ntasks=16 --jobid=749652 --cpus-per-task=1 --mem=76G | |
| section_end:1661695940:prepare_executor [0Ksection_start:1661695940:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i7n22 via bbpv1.epfl.ch... | |
| section_end:1661695942:prepare_script [0Ksection_start:1661695942:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1661695943:get_sources [0Ksection_start:1661695943:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron:nmodl:intel:debug:legacy (338717)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=125124 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=338717 responseStatus[0;m=200 OK token[0;m=ZXXuF5sp | |
| section_end:1661695945:download_artifacts [0Ksection_start:1661695945:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i7n22 | |
| Build name: Linux-icpc | |
| Create new tag: 20220828-1412 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338717/spack-build/spack-stage-neuron-develop-6hecvyxx63bjcemn2f652e62xlwohiek/spack-build-6hecvyx | |
| Start 50: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 57: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 63: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| Start 69: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| Start 75: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| Start 81: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| Start 86: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| Start 92: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| Start 98: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 1/121 Test #57: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 3.34 sec | |
| Start 44: external_ringtest::neuron | |
| 2/121 Test #63: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 3.54 sec | |
| Start 53: testcorenrn_bbcore::neuron | |
| 3/121 Test #69: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 4.05 sec | |
| Start 54: testcorenrn_bbcore::coreneuron_cpu_online | |
| 4/121 Test #81: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 4.51 sec | |
| Start 55: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 5/121 Test #75: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 4.62 sec | |
| Start 104: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 6/121 Test #92: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 4.66 sec | |
| Start 45: external_ringtest::neuron_mpi | |
| 7/121 Test #86: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 4.74 sec | |
| Start 46: external_ringtest::neuron_mpi_python | |
| 8/121 Test #50: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 4.81 sec | |
| Start 47: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
| 9/121 Test #98: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 4.87 sec | |
| Start 118: olfactory-bulb-3d::neuron::preparation | |
| 10/121 Test #118: olfactory-bulb-3d::neuron::preparation ............................. Passed 0.02 sec | |
| Start 120: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| 11/121 Test #120: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............. Passed 0.02 sec | |
| Start 41: reduced_dentate::neuron | |
| 12/121 Test #53: testcorenrn_bbcore::neuron ......................................... Passed 1.70 sec | |
| Start 56: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 13/121 Test #54: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 1.84 sec | |
| Start 59: testcorenrn_conc::neuron | |
| 14/121 Test #44: external_ringtest::neuron .......................................... Passed 2.79 sec | |
| Start 60: testcorenrn_conc::coreneuron_cpu_online | |
| 15/121 Test #55: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 3.27 sec | |
| Start 61: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 16/121 Test #104: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 3.21 sec | |
| Start 48: external_ringtest::coreneuron_cpu_mpi | |
| 17/121 Test #56: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 2.89 sec | |
| Start 62: testcorenrn_conc::coreneuron_cpu_offline | |
| 18/121 Test #59: testcorenrn_conc::neuron ........................................... Passed 3.05 sec | |
| Start 65: testcorenrn_deriv::neuron | |
| 19/121 Test #60: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 3.35 sec | |
| Start 66: testcorenrn_deriv::coreneuron_cpu_online | |
| 20/121 Test #62: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 1.69 sec | |
| Start 67: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 21/121 Test #45: external_ringtest::neuron_mpi ...................................... Passed 5.23 sec | |
| Start 49: external_ringtest::coreneuron_cpu_mpi_offline | |
| 22/121 Test #46: external_ringtest::neuron_mpi_python ............................... Passed 5.28 sec | |
| Start 68: testcorenrn_deriv::coreneuron_cpu_offline | |
| Start 77: testcorenrn_kin::neuron | |
| 23/121 Test #61: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 2.29 sec | |
| Start 78: testcorenrn_kin::coreneuron_cpu_online | |
| 24/121 Test #65: testcorenrn_deriv::neuron .......................................... Passed 1.60 sec | |
| Start 79: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 25/121 Test #48: external_ringtest::coreneuron_cpu_mpi .............................. Passed 3.10 sec | |
| Start 71: testcorenrn_gf::neuron | |
| 26/121 Test #66: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 1.92 sec | |
| Start 80: testcorenrn_kin::coreneuron_cpu_offline | |
| 27/121 Test #68: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 1.57 sec | |
| Start 109: channel_benchmark_hippo::neuron | |
| 28/121 Test #77: testcorenrn_kin::neuron ............................................ Passed 1.68 sec | |
| Start 110: channel_benchmark_hippo::coreneuron_cpu_online | |
| 29/121 Test #67: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 2.07 sec | |
| Start 111: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 30/121 Test #49: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 2.43 sec | |
| Start 72: testcorenrn_gf::coreneuron_cpu_online | |
| 31/121 Test #78: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 2.31 sec | |
| Start 113: channel_benchmark_sscx::neuron | |
| 32/121 Test #79: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 2.19 sec | |
| Start 114: channel_benchmark_sscx::coreneuron_cpu_online | |
| 33/121 Test #71: testcorenrn_gf::neuron ............................................. Passed 2.21 sec | |
| Start 73: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 34/121 Test #80: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 1.82 sec | |
| Start 115: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 35/121 Test #47: external_ringtest::coreneuron_cpu_mpi_offline_saverestore .......... Passed 10.38 sec | |
| Start 74: testcorenrn_gf::coreneuron_cpu_offline | |
| 36/121 Test #72: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 3.37 sec | |
| Start 83: testcorenrn_patstim::neuron | |
| 37/121 Test #41: reduced_dentate::neuron ............................................ Passed 11.48 sec | |
| Start 42: reduced_dentate::coreneuron_cpu | |
| 38/121 Test #73: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 3.48 sec | |
| Start 84: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
| 39/121 Test #74: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 2.20 sec | |
| Start 85: testcorenrn_patstim::coreneuron_cpu_offline | |
| 40/121 Test #83: testcorenrn_patstim::neuron ........................................ Passed 1.98 sec | |
| Start 88: testcorenrn_vecplay::neuron | |
| 41/121 Test #85: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 2.55 sec | |
| Start 89: testcorenrn_vecplay::coreneuron_cpu_online | |
| 42/121 Test #88: testcorenrn_vecplay::neuron ........................................ Passed 3.39 sec | |
| Start 90: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 43/121 Test #89: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 4.10 sec | |
| Start 91: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 44/121 Test #84: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............ Passed 8.44 sec | |
| Start 100: testcorenrn_watch::neuron | |
| 45/121 Test #90: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 5.08 sec | |
| Start 101: testcorenrn_watch::coreneuron_cpu_online | |
| 46/121 Test #91: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 2.50 sec | |
| Start 102: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 47/121 Test #100: testcorenrn_watch::neuron .......................................... Passed 2.45 sec | |
| Start 103: testcorenrn_watch::coreneuron_cpu_offline | |
| 48/121 Test #101: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 3.02 sec | |
| Start 106: testcorenrn_netstimdirect::direct_netstimdirect | |
| 49/121 Test #103: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 3.28 sec | |
| Start 107: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 50/121 Test #102: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 4.32 sec | |
| Start 1: testneuron | |
| Start 2: ringtest | |
| 51/121 Test #1: testneuron ......................................................... Passed 0.46 sec | |
| Start 3: connect_dend | |
| 52/121 Test #3: connect_dend ....................................................... Passed 0.68 sec | |
| Start 4: mpi_init::nrniv_mpiopt | |
| 53/121 Test #2: ringtest ........................................................... Passed 1.16 sec | |
| Start 5: mpi_init::nrniv_nrnmpi_init | |
| 54/121 Test #4: mpi_init::nrniv_mpiopt ............................................. Passed 0.37 sec | |
| Start 6: mpi_init::python_nrnmpi_init | |
| 55/121 Test #5: mpi_init::nrniv_nrnmpi_init ........................................ Passed 0.72 sec | |
| Start 7: mpi_init::python_mpienv | |
| 56/121 Test #106: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 4.02 sec | |
| Start 8: mpi_init::nrniv_mpiexec_mpiopt | |
| Start 9: mpi_init::nrniv_mpiexec_nrnmpi_init | |
| 57/121 Test #6: mpi_init::python_nrnmpi_init ....................................... Passed 0.86 sec | |
| Start 10: mpi_init::python_mpiexec_nrnmpi_init | |
| 58/121 Test #107: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 3.59 sec | |
| Start 11: mpi_init::python_mpiexec_mpienv | |
| Start 12: pynrn::basic_tests | |
| 59/121 Test #7: mpi_init::python_mpienv ............................................ Passed 1.67 sec | |
| Start 13: coverage_tests::cover_tests | |
| 60/121 Test #8: mpi_init::nrniv_mpiexec_mpiopt ..................................... Passed 2.07 sec | |
| Start 18: coreneuron_modtests::version_macros | |
| 61/121 Test #9: mpi_init::nrniv_mpiexec_nrnmpi_init ................................ Passed 2.29 sec | |
| Start 19: coreneuron_modtests::fornetcon_py_cpu | |
| 62/121 Test #10: mpi_init::python_mpiexec_nrnmpi_init ............................... Passed 2.93 sec | |
| Start 20: coreneuron_modtests::direct_py_cpu | |
| 63/121 Test #18: coreneuron_modtests::version_macros ................................ Passed 1.13 sec | |
| Start 21: coreneuron_modtests::direct_hoc_cpu | |
| 64/121 Test #19: coreneuron_modtests::fornetcon_py_cpu .............................. Passed 1.09 sec | |
| Start 22: coreneuron_modtests::spikes_py_cpu | |
| 65/121 Test #42: reduced_dentate::coreneuron_cpu .................................... Passed 20.30 sec | |
| Start 94: testcorenrn_vecevent::neuron | |
| 66/121 Test #11: mpi_init::python_mpiexec_mpienv .................................... Passed 2.70 sec | |
| Start 23: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 67/121 Test #20: coreneuron_modtests::direct_py_cpu ................................. Passed 1.11 sec | |
| Start 24: coreneuron_modtests::fast_imem_py_cpu | |
| 68/121 Test #21: coreneuron_modtests::direct_hoc_cpu ................................ Passed 1.11 sec | |
| Start 25: coreneuron_modtests::datareturn_py_cpu | |
| 69/121 Test #23: coreneuron_modtests::spikes_file_mode_py_cpu ....................... Passed 1.52 sec | |
| Start 26: coreneuron_modtests::test_units_py_cpu | |
| 70/121 Test #22: coreneuron_modtests::spikes_py_cpu ................................. Passed 2.19 sec | |
| Start 27: coreneuron_modtests::test_netmove_py_cpu | |
| 71/121 Test #24: coreneuron_modtests::fast_imem_py_cpu .............................. Passed 1.70 sec | |
| Start 28: coreneuron_modtests::test_pointer_py_cpu | |
| 72/121 Test #25: coreneuron_modtests::datareturn_py_cpu ............................. Passed 1.66 sec | |
| Start 29: coreneuron_modtests::test_watchrange_py_cpu | |
| 73/121 Test #26: coreneuron_modtests::test_units_py_cpu ............................. Passed 0.60 sec | |
| Start 30: coreneuron_modtests::test_psolve_py_cpu | |
| 74/121 Test #109: channel_benchmark_hippo::neuron .................................... Passed 27.82 sec | |
| Start 31: coreneuron_modtests::test_ba_py_cpu | |
| 75/121 Test #27: coreneuron_modtests::test_netmove_py_cpu ........................... Passed 0.85 sec | |
| Start 32: coreneuron_modtests::test_natrans_py_cpu | |
| 76/121 Test #13: coverage_tests::cover_tests ........................................ Passed 5.27 sec | |
| Start 36: modlunit_unitstest | |
| 77/121 Test #111: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 27.82 sec | |
| Start 37: modlunit_hh | |
| 78/121 Test #36: modlunit_unitstest ................................................. Passed 0.09 sec | |
| Start 38: modlunit_stim | |
| 79/121 Test #94: testcorenrn_vecevent::neuron ....................................... Passed 3.12 sec | |
| Start 95: testcorenrn_vecevent::coreneuron_cpu_online | |
| 80/121 Test #37: modlunit_hh ........................................................ Passed 0.14 sec | |
| Start 39: modlunit_pattern | |
| 81/121 Test #38: modlunit_stim ...................................................... Passed 0.16 sec | |
| Start 40: external_nrntest | |
| 82/121 Test #114: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 27.23 sec | |
| Start 43: reduced_dentate::compare_results | |
| 83/121 Test #29: coreneuron_modtests::test_watchrange_py_cpu ........................ Passed 0.84 sec | |
| Start 58: testcorenrn_bbcore::compare_results | |
| 84/121 Test #39: modlunit_pattern ................................................... Passed 0.16 sec | |
| Start 64: testcorenrn_conc::compare_results | |
| 85/121 Test #113: channel_benchmark_sscx::neuron ..................................... Passed 27.77 sec | |
| Start 70: testcorenrn_deriv::compare_results | |
| 86/121 Test #30: coreneuron_modtests::test_psolve_py_cpu ............................ Passed 1.00 sec | |
| Start 76: testcorenrn_gf::compare_results | |
| 87/121 Test #115: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 27.16 sec | |
| Start 82: testcorenrn_kin::compare_results | |
| 88/121 Test #110: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 28.75 sec | |
| Start 87: testcorenrn_patstim::compare_results | |
| 89/121 Test #43: reduced_dentate::compare_results ................................... Passed 0.66 sec | |
| Start 93: testcorenrn_vecplay::compare_results | |
| 90/121 Test #58: testcorenrn_bbcore::compare_results ................................ Passed 0.70 sec | |
| Start 105: testcorenrn_watch::compare_results | |
| 91/121 Test #64: testcorenrn_conc::compare_results .................................. Passed 0.74 sec | |
| Start 108: testcorenrn_netstimdirect::compare_results | |
| 92/121 Test #70: testcorenrn_deriv::compare_results ................................. Passed 0.78 sec | |
| Start 112: channel_benchmark_hippo::compare_results | |
| 93/121 Test #76: testcorenrn_gf::compare_results .................................... Passed 0.81 sec | |
| Start 116: channel_benchmark_sscx::compare_results | |
| 94/121 Test #31: coreneuron_modtests::test_ba_py_cpu ................................ Passed 1.66 sec | |
| 95/121 Test #82: testcorenrn_kin::compare_results ................................... Passed 0.90 sec | |
| Start 15: parallel::partrans | |
| 96/121 Test #87: testcorenrn_patstim::compare_results ............................... Passed 0.87 sec | |
| 97/121 Test #93: testcorenrn_vecplay::compare_results ............................... Passed 0.93 sec | |
| Start 16: parallel::netpar | |
| 98/121 Test #105: testcorenrn_watch::compare_results ................................. Passed 0.89 sec | |
| 99/121 Test #108: testcorenrn_netstimdirect::compare_results ......................... Passed 0.89 sec | |
| Start 17: parallel::bas | |
| 100/121 Test #112: channel_benchmark_hippo::compare_results ........................... Passed 0.83 sec | |
| 101/121 Test #116: channel_benchmark_sscx::compare_results ............................ Passed 0.80 sec | |
| Start 33: coreneuron_modtests::spikes_mpi_py_cpu | |
| 102/121 Test #32: coreneuron_modtests::test_natrans_py_cpu ........................... Passed 2.55 sec | |
| 103/121 Test #95: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 6.35 sec | |
| Start 96: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 104/121 Test #28: coreneuron_modtests::test_pointer_py_cpu ........................... Passed 7.53 sec | |
| Start 34: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 105/121 Test #15: parallel::partrans ................................................. Passed 5.90 sec | |
| Start 35: coreneuron_modtests::inputpresyn_py_cpu | |
| 106/121 Test #16: parallel::netpar ................................................... Passed 5.79 sec | |
| 107/121 Test #33: coreneuron_modtests::spikes_mpi_py_cpu ............................. Passed 5.93 sec | |
| Start 97: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 108/121 Test #97: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 3.86 sec | |
| Start 117: olfactory-bulb-3d::neuron | |
| 109/121 Test #34: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................... Passed 6.38 sec | |
| 110/121 Test #96: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 6.85 sec | |
| Start 51: external_ringtest::coreneuron_cpu_mpi_threads | |
| 111/121 Test #35: coreneuron_modtests::inputpresyn_py_cpu ............................ Passed 6.23 sec | |
| Start 99: testcorenrn_vecevent::compare_results | |
| 112/121 Test #99: testcorenrn_vecevent::compare_results .............................. Passed 0.78 sec | |
| 113/121 Test #12: pynrn::basic_tests ................................................. Passed 24.50 sec | |
| 114/121 Test #51: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 6.18 sec | |
| Start 119: olfactory-bulb-3d::coreneuron_cpu_online | |
| Start 52: external_ringtest::compare_results | |
| 115/121 Test #52: external_ringtest::compare_results ................................. Passed 0.33 sec | |
| 116/121 Test #17: parallel::bas ...................................................... Passed 18.34 sec | |
| Start 14: parallel::subworld | |
| 117/121 Test #14: parallel::subworld ................................................. Passed 4.30 sec | |
| 118/121 Test #119: olfactory-bulb-3d::coreneuron_cpu_online ........................... Passed 51.74 sec | |
| 119/121 Test #117: olfactory-bulb-3d::neuron .......................................... Passed 66.62 sec | |
| Start 121: olfactory-bulb-3d::compare_results | |
| 120/121 Test #121: olfactory-bulb-3d::compare_results ................................. Passed 0.20 sec | |
| 121/121 Test #40: external_nrntest ................................................... Passed 104.06 sec | |
| 100% tests passed, 0 tests failed out of 121 | |
| Total Test time (real) = 144.06 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1661696116:step_script [0Ksection_start:1661696116:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=132243 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=338734 responseStatus[0;m=201 Created token[0;m=ZXXuF5sp | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=132298 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=338734 responseStatus[0;m=201 Created token[0;m=ZXXuF5sp | |
| section_end:1661696117:upload_artifacts_on_success [0Ksection_start:1661696117:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1661696118:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.1.0 (76984217)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1661697599:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1661697599:resolve_secrets [0Ksection_start:1661697599:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.1.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2432364585, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 71526, build ref 567bd21cc895460c3e176d71d24dd82a549835a9, job ID 338737 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J338737_PROD_P112_CP2_C2 | |
| Job parameters: memory=76G, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 749662 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=76G --job-name=GL_J338737_PROD_P112_CP2_C2 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P71526 --ntasks=16 --jobid=749662 --cpus-per-task=1 --mem=76G | |
| section_end:1661697600:prepare_executor [0Ksection_start:1661697600:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i3n0 via bbpv1.epfl.ch... | |
| section_end:1661697603:prepare_script [0Ksection_start:1661697603:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1661697604:get_sources [0Ksection_start:1661697604:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron:nmodl:nvhpc:acc:debug:legacy (338720)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=254341 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=338720 responseStatus[0;m=200 OK token[0;m=8m5CUsyp | |
| section_end:1661697605:download_artifacts [0Ksection_start:1661697605:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i6n29 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220828-1440 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P71526/J338720/spack-build/spack-stage-neuron-develop-lvcy5zecd44mre3mxxopfuftzl6uqnxc/spack-build-lvcy5ze | |
| Start 68: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 73: external_ringtest::coreneuron_gpu_mpi_offline::preparation | |
| Start 80: testcorenrn_bbcore::coreneuron_gpu_offline::preparation | |
| Start 84: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 90: testcorenrn_conc::coreneuron_gpu_offline::preparation | |
| Start 94: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| Start 100: testcorenrn_deriv::coreneuron_gpu_offline::preparation | |
| Start 104: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| Start 110: testcorenrn_gf::coreneuron_gpu_offline::preparation | |
| Start 114: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| Start 120: testcorenrn_kin::coreneuron_gpu_offline::preparation | |
| Start 124: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| 1/185 Test #80: testcorenrn_bbcore::coreneuron_gpu_offline::preparation ............ Passed 12.23 sec | |
| Start 129: testcorenrn_patstim::coreneuron_gpu_offline::preparation | |
| 2/185 Test #104: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 12.23 sec | |
| Start 62: external_ringtest::neuron | |
| 3/185 Test #94: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 12.31 sec | |
| Start 76: testcorenrn_bbcore::neuron | |
| 4/185 Test #84: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 12.37 sec | |
| Start 77: testcorenrn_bbcore::coreneuron_gpu_online | |
| 5/185 Test #90: testcorenrn_conc::coreneuron_gpu_offline::preparation .............. Passed 12.48 sec | |
| Start 78: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate | |
| 6/185 Test #124: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 12.51 sec | |
| Start 79: testcorenrn_bbcore::coreneuron_gpu_offline | |
| 7/185 Test #120: testcorenrn_kin::coreneuron_gpu_offline::preparation ............... Passed 12.69 sec | |
| Start 81: testcorenrn_bbcore::coreneuron_cpu_online | |
| 8/185 Test #100: testcorenrn_deriv::coreneuron_gpu_offline::preparation ............. Passed 12.82 sec | |
| Start 82: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 9/185 Test #114: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 12.88 sec | |
| Start 132: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| 10/185 Test #110: testcorenrn_gf::coreneuron_gpu_offline::preparation ................ Passed 13.03 sec | |
| Start 138: testcorenrn_vecplay::coreneuron_gpu_offline::preparation | |
| 11/185 Test #73: external_ringtest::coreneuron_gpu_mpi_offline::preparation ......... Passed 19.31 sec | |
| Start 142: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 12/185 Test #68: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 19.37 sec | |
| Start 158: testcorenrn_watch::coreneuron_gpu_offline::preparation | |
| 13/185 Test #79: testcorenrn_bbcore::coreneuron_gpu_offline ......................... Passed 8.39 sec | |
| Start 83: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 14/185 Test #129: testcorenrn_patstim::coreneuron_gpu_offline::preparation ........... Passed 10.84 sec | |
| Start 86: testcorenrn_conc::neuron | |
| 15/185 Test #76: testcorenrn_bbcore::neuron ......................................... Passed 11.26 sec | |
| Start 87: testcorenrn_conc::coreneuron_gpu_online | |
| 16/185 Test #138: testcorenrn_vecplay::coreneuron_gpu_offline::preparation ........... Passed 11.81 sec | |
| Start 162: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 17/185 Test #132: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 12.10 sec | |
| Start 63: external_ringtest::neuron_mpi | |
| 18/185 Test #62: external_ringtest::neuron .......................................... Passed 13.40 sec | |
| Start 88: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate | |
| 19/185 Test #83: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 7.11 sec | |
| Start 89: testcorenrn_conc::coreneuron_gpu_offline | |
| 20/185 Test #81: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 17.01 sec | |
| Start 91: testcorenrn_conc::coreneuron_cpu_online | |
| 21/185 Test #82: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 17.08 sec | |
| Start 92: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 22/185 Test #142: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 10.92 sec | |
| Start 64: external_ringtest::neuron_mpi_python | |
| 23/185 Test #158: testcorenrn_watch::coreneuron_gpu_offline::preparation ............. Passed 10.94 sec | |
| Start 65: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
| 24/185 Test #86: testcorenrn_conc::neuron ........................................... Passed 10.61 sec | |
| Start 93: testcorenrn_conc::coreneuron_cpu_offline | |
| 25/185 Test #162: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 10.89 sec | |
| Start 66: external_ringtest::coreneuron_cpu_mpi | |
| 26/185 Test #78: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate ......... Passed 26.57 sec | |
| Start 96: testcorenrn_deriv::neuron | |
| 27/185 Test #93: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 7.01 sec | |
| Start 97: testcorenrn_deriv::coreneuron_gpu_online | |
| 28/185 Test #63: external_ringtest::neuron_mpi ...................................... Passed 16.19 sec | |
| Start 67: external_ringtest::coreneuron_cpu_mpi_offline | |
| 29/185 Test #77: testcorenrn_bbcore::coreneuron_gpu_online .......................... Passed 29.24 sec | |
| Start 98: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate | |
| 30/185 Test #91: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 14.55 sec | |
| Start 99: testcorenrn_deriv::coreneuron_gpu_offline | |
| 31/185 Test #64: external_ringtest::neuron_mpi_python ............................... Passed 14.37 sec | |
| Start 70: external_ringtest::coreneuron_gpu_mpi_offline_saverestore | |
| 32/185 Test #92: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 14.77 sec | |
| Start 101: testcorenrn_deriv::coreneuron_cpu_online | |
| 33/185 Test #96: testcorenrn_deriv::neuron .......................................... Passed 8.12 sec | |
| Start 102: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 34/185 Test #67: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 6.82 sec | |
| Start 71: external_ringtest::coreneuron_gpu_mpi | |
| 35/185 Test #66: external_ringtest::coreneuron_cpu_mpi .............................. Passed 14.39 sec | |
| Start 72: external_ringtest::coreneuron_gpu_mpi_offline | |
| 36/185 Test #101: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 10.44 sec | |
| Start 103: testcorenrn_deriv::coreneuron_cpu_offline | |
| 37/185 Test #102: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 14.40 sec | |
| Start 116: testcorenrn_kin::neuron | |
| 38/185 Test #103: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 6.71 sec | |
| Start 117: testcorenrn_kin::coreneuron_gpu_online | |
| 39/185 Test #116: testcorenrn_kin::neuron ............................................ Passed 3.24 sec | |
| Start 118: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate | |
| 40/185 Test #65: external_ringtest::coreneuron_cpu_mpi_offline_saverestore .......... Passed 37.55 sec | |
| Start 106: testcorenrn_gf::neuron | |
| 41/185 Test #106: testcorenrn_gf::neuron ............................................. Passed 4.46 sec | |
| Start 107: testcorenrn_gf::coreneuron_gpu_online | |
| 42/185 Test #70: external_ringtest::coreneuron_gpu_mpi_offline_saverestore .......... Passed 31.93 sec | |
| Start 108: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate | |
| 43/185 Test #89: testcorenrn_conc::coreneuron_gpu_offline ........................... Passed 65.87 sec | |
| Start 119: testcorenrn_kin::coreneuron_gpu_offline | |
| 44/185 Test #87: testcorenrn_conc::coreneuron_gpu_online ............................ Passed 83.70 sec | |
| Start 121: testcorenrn_kin::coreneuron_cpu_online | |
| 45/185 Test #121: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 6.98 sec | |
| Start 122: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 46/185 Test #122: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 6.42 sec | |
| Start 123: testcorenrn_kin::coreneuron_cpu_offline | |
| 47/185 Test #123: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 4.84 sec | |
| Start 127: testcorenrn_patstim::coreneuron_gpu_offline_saverestore | |
| 48/185 Test #88: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate ........... Passed 106.28 sec | |
| Start 128: testcorenrn_patstim::coreneuron_gpu_offline | |
| 49/185 Test #99: testcorenrn_deriv::coreneuron_gpu_offline .......................... Passed 89.20 sec | |
| Start 167: channel_benchmark_hippo::neuron | |
| 50/185 Test #97: testcorenrn_deriv::coreneuron_gpu_online ........................... Passed 96.21 sec | |
| Start 168: channel_benchmark_hippo::coreneuron_gpu_online | |
| 51/185 Test #98: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate .......... Passed 106.61 sec | |
| Start 169: channel_benchmark_hippo::coreneuron_gpu_filemode | |
| 52/185 Test #117: testcorenrn_kin::coreneuron_gpu_online ............................. Passed 89.49 sec | |
| Start 170: channel_benchmark_hippo::coreneuron_cpu_online | |
| 53/185 Test #118: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate ............ Passed 89.98 sec | |
| Start 171: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 54/185 Test #72: external_ringtest::coreneuron_gpu_mpi_offline ...................... Passed 117.17 sec | |
| Start 109: testcorenrn_gf::coreneuron_gpu_offline | |
| 55/185 Test #119: testcorenrn_kin::coreneuron_gpu_offline ............................ Passed 78.45 sec | |
| Start 173: channel_benchmark_sscx::neuron | |
| 56/185 Test #71: external_ringtest::coreneuron_gpu_mpi .............................. Passed 124.63 sec | |
| Start 111: testcorenrn_gf::coreneuron_cpu_online | |
| 57/185 Test #111: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 8.15 sec | |
| Start 112: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 58/185 Test #167: channel_benchmark_hippo::neuron .................................... Passed 49.49 sec | |
| Start 174: channel_benchmark_sscx::coreneuron_gpu_online | |
| 59/185 Test #170: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 36.62 sec | |
| Start 175: channel_benchmark_sscx::coreneuron_gpu_filemode | |
| 60/185 Test #112: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 7.50 sec | |
| Start 113: testcorenrn_gf::coreneuron_cpu_offline | |
| 61/185 Test #168: channel_benchmark_hippo::coreneuron_gpu_online ..................... Passed 55.89 sec | |
| Start 176: channel_benchmark_sscx::coreneuron_cpu_online | |
| 62/185 Test #113: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 6.53 sec | |
| Start 126: testcorenrn_patstim::neuron | |
| 63/185 Test #126: testcorenrn_patstim::neuron ........................................ Passed 3.45 sec | |
| Start 130: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
| 64/185 Test #171: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 48.53 sec | |
| Start 177: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 65/185 Test #108: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate ............. Passed 127.03 sec | |
| Start 131: testcorenrn_patstim::coreneuron_cpu_offline | |
| 66/185 Test #169: channel_benchmark_hippo::coreneuron_gpu_filemode ................... Passed 57.06 sec | |
| Start 1: testneuron | |
| 67/185 Test #1: testneuron ......................................................... Passed 0.13 sec | |
| Start 2: ringtest | |
| 68/185 Test #173: channel_benchmark_sscx::neuron ..................................... Passed 33.79 sec | |
| Start 3: connect_dend | |
| 69/185 Test #2: ringtest ........................................................... Passed 1.08 sec | |
| Start 4: mpi_init::nrniv_mpiopt | |
| 70/185 Test #3: connect_dend ....................................................... Passed 0.32 sec | |
| Start 5: mpi_init::nrniv_nrnmpi_init | |
| 71/185 Test #4: mpi_init::nrniv_mpiopt ............................................. Passed 0.22 sec | |
| Start 6: mpi_init::python_nrnmpi_init | |
| 72/185 Test #5: mpi_init::nrniv_nrnmpi_init ........................................ Passed 0.18 sec | |
| Start 7: mpi_init::python_mpienv | |
| 73/185 Test #6: mpi_init::python_nrnmpi_init ....................................... Passed 1.06 sec | |
| Start 8: mpi_init::nrniv_mpiexec_mpiopt | |
| 74/185 Test #7: mpi_init::python_mpienv ............................................ Passed 1.04 sec | |
| Start 9: mpi_init::nrniv_mpiexec_nrnmpi_init | |
| 75/185 Test #131: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 4.41 sec | |
| Start 134: testcorenrn_vecplay::neuron | |
| 76/185 Test #130: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............ Passed 11.51 sec | |
| Start 135: testcorenrn_vecplay::coreneuron_gpu_online | |
| 77/185 Test #9: mpi_init::nrniv_mpiexec_nrnmpi_init ................................ Passed 2.81 sec | |
| Start 10: mpi_init::python_mpiexec_nrnmpi_init | |
| 78/185 Test #8: mpi_init::nrniv_mpiexec_mpiopt ..................................... Passed 2.93 sec | |
| Start 11: mpi_init::python_mpiexec_mpienv | |
| 79/185 Test #134: testcorenrn_vecplay::neuron ........................................ Passed 3.39 sec | |
| Start 136: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate | |
| 80/185 Test #107: testcorenrn_gf::coreneuron_gpu_online .............................. Passed 140.57 sec | |
| Start 137: testcorenrn_vecplay::coreneuron_gpu_offline | |
| 81/185 Test #10: mpi_init::python_mpiexec_nrnmpi_init ............................... Passed 6.97 sec | |
| Start 12: pynrn::basic_tests | |
| 82/185 Test #11: mpi_init::python_mpiexec_mpienv .................................... Passed 6.95 sec | |
| Start 13: coverage_tests::cover_tests | |
| 83/185 Test #13: coverage_tests::cover_tests ........................................ Passed 10.41 sec | |
| Start 18: coreneuron_modtests::version_macros | |
| 84/185 Test #128: testcorenrn_patstim::coreneuron_gpu_offline ........................ Passed 97.32 sec | |
| Start 19: coreneuron_modtests::fornetcon_py_cpu | |
| 85/185 Test #176: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 36.89 sec | |
| Start 20: coreneuron_modtests::direct_py_cpu | |
| 86/185 Test #18: coreneuron_modtests::version_macros ................................ Passed 2.36 sec | |
| Start 21: coreneuron_modtests::direct_hoc_cpu | |
| 87/185 Test #127: testcorenrn_patstim::coreneuron_gpu_offline_saverestore ............ Passed 106.66 sec | |
| Start 22: coreneuron_modtests::spikes_py_cpu | |
| 88/185 Test #19: coreneuron_modtests::fornetcon_py_cpu .............................. Passed 4.12 sec | |
| Start 23: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 89/185 Test #20: coreneuron_modtests::direct_py_cpu ................................. Passed 5.17 sec | |
| Start 24: coreneuron_modtests::fast_imem_py_cpu | |
| 90/185 Test #21: coreneuron_modtests::direct_hoc_cpu ................................ Passed 5.30 sec | |
| Start 25: coreneuron_modtests::datareturn_py_cpu | |
| 91/185 Test #23: coreneuron_modtests::spikes_file_mode_py_cpu ....................... Passed 4.31 sec | |
| Start 26: coreneuron_modtests::test_units_py_cpu | |
| 92/185 Test #22: coreneuron_modtests::spikes_py_cpu ................................. Passed 7.11 sec | |
| Start 27: coreneuron_modtests::test_netmove_py_cpu | |
| 93/185 Test #175: channel_benchmark_sscx::coreneuron_gpu_filemode .................... Passed 51.64 sec | |
| Start 28: coreneuron_modtests::test_pointer_py_cpu | |
| 94/185 Test #24: coreneuron_modtests::fast_imem_py_cpu .............................. Passed 6.75 sec | |
| Start 29: coreneuron_modtests::test_watchrange_py_cpu | |
| 95/185 Test #177: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 39.85 sec | |
| Start 30: coreneuron_modtests::test_psolve_py_cpu | |
| 96/185 Test #25: coreneuron_modtests::datareturn_py_cpu ............................. Passed 7.73 sec | |
| Start 31: coreneuron_modtests::test_ba_py_cpu | |
| 97/185 Test #26: coreneuron_modtests::test_units_py_cpu ............................. Passed 6.14 sec | |
| Start 32: coreneuron_modtests::test_natrans_py_cpu | |
| 98/185 Test #174: channel_benchmark_sscx::coreneuron_gpu_online ...................... Passed 61.94 sec | |
| Start 36: coreneuron_modtests::fornetcon_py_gpu | |
| 99/185 Test #12: pynrn::basic_tests ................................................. Passed 27.67 sec | |
| Start 37: coreneuron_modtests::direct_py_gpu | |
| 100/185 Test #29: coreneuron_modtests::test_watchrange_py_cpu ........................ Passed 4.70 sec | |
| Start 38: coreneuron_modtests::direct_hoc_gpu | |
| 101/185 Test #27: coreneuron_modtests::test_netmove_py_cpu ........................... Passed 7.17 sec | |
| Start 39: coreneuron_modtests::spikes_py_gpu | |
| 102/185 Test #31: coreneuron_modtests::test_ba_py_cpu ................................ Passed 3.48 sec | |
| Start 40: coreneuron_modtests::spikes_file_mode_py_gpu | |
| 103/185 Test #30: coreneuron_modtests::test_psolve_py_cpu ............................ Passed 3.82 sec | |
| Start 41: coreneuron_modtests::fast_imem_py_gpu | |
| 104/185 Test #32: coreneuron_modtests::test_natrans_py_cpu ........................... Passed 4.01 sec | |
| Start 42: coreneuron_modtests::datareturn_py_gpu | |
| 105/185 Test #38: coreneuron_modtests::direct_hoc_gpu ................................ Passed 8.46 sec | |
| Start 43: coreneuron_modtests::test_units_py_gpu | |
| 106/185 Test #43: coreneuron_modtests::test_units_py_gpu ............................. Passed 3.99 sec | |
| Start 44: coreneuron_modtests::test_netmove_py_gpu | |
| 107/185 Test #40: coreneuron_modtests::spikes_file_mode_py_gpu ....................... Passed 12.53 sec | |
| Start 45: coreneuron_modtests::test_pointer_py_gpu | |
| 108/185 Test #41: coreneuron_modtests::fast_imem_py_gpu .............................. Passed 18.29 sec | |
| Start 46: coreneuron_modtests::test_watchrange_py_gpu | |
| 109/185 Test #37: coreneuron_modtests::direct_py_gpu ................................. Passed 22.50 sec | |
| Start 47: coreneuron_modtests::test_psolve_py_gpu | |
| 110/185 Test #28: coreneuron_modtests::test_pointer_py_cpu ........................... Passed 29.09 sec | |
| Start 48: coreneuron_modtests::test_ba_py_gpu | |
| 111/185 Test #36: coreneuron_modtests::fornetcon_py_gpu .............................. Passed 24.15 sec | |
| Start 49: coreneuron_modtests::test_natrans_py_gpu | |
| 112/185 Test #39: coreneuron_modtests::spikes_py_gpu ................................. Passed 28.61 sec | |
| Start 53: modlunit_unitstest | |
| 113/185 Test #53: modlunit_unitstest ................................................. Passed 0.67 sec | |
| Start 54: modlunit_hh | |
| 114/185 Test #54: modlunit_hh ........................................................ Passed 0.21 sec | |
| Start 55: modlunit_stim | |
| 115/185 Test #55: modlunit_stim ...................................................... Passed 0.36 sec | |
| Start 56: modlunit_pattern | |
| 116/185 Test #48: coreneuron_modtests::test_ba_py_gpu ................................ Passed 7.75 sec | |
| Start 57: external_nrntest | |
| 117/185 Test #49: coreneuron_modtests::test_natrans_py_gpu ........................... Passed 7.39 sec | |
| Start 85: testcorenrn_bbcore::compare_results | |
| 118/185 Test #56: modlunit_pattern ................................................... Passed 0.48 sec | |
| Start 95: testcorenrn_conc::compare_results | |
| 119/185 Test #85: testcorenrn_bbcore::compare_results ................................ Passed 1.04 sec | |
| Start 105: testcorenrn_deriv::compare_results | |
| 120/185 Test #95: testcorenrn_conc::compare_results .................................. Passed 1.86 sec | |
| Start 125: testcorenrn_kin::compare_results | |
| 121/185 Test #105: testcorenrn_deriv::compare_results ................................. Passed 1.55 sec | |
| Start 133: testcorenrn_patstim::compare_results | |
| 122/185 Test #46: coreneuron_modtests::test_watchrange_py_gpu ........................ Passed 13.93 sec | |
| Start 172: channel_benchmark_hippo::compare_results | |
| 123/185 Test #47: coreneuron_modtests::test_psolve_py_gpu ............................ Passed 13.33 sec | |
| Start 178: channel_benchmark_sscx::compare_results | |
| 124/185 Test #125: testcorenrn_kin::compare_results ................................... Passed 2.35 sec | |
| 125/185 Test #172: channel_benchmark_hippo::compare_results ........................... Passed 1.96 sec | |
| Start 139: testcorenrn_vecplay::coreneuron_cpu_online | |
| 126/185 Test #133: testcorenrn_patstim::compare_results ............................... Passed 2.42 sec | |
| 127/185 Test #178: channel_benchmark_sscx::compare_results ............................ Passed 1.46 sec | |
| Start 140: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 128/185 Test #109: testcorenrn_gf::coreneuron_gpu_offline ............................. Passed 115.80 sec | |
| Start 141: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 129/185 Test #45: coreneuron_modtests::test_pointer_py_gpu ........................... Passed 26.47 sec | |
| Start 115: testcorenrn_gf::compare_results | |
| 130/185 Test #115: testcorenrn_gf::compare_results .................................... Passed 1.03 sec | |
| 131/185 Test #141: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 6.57 sec | |
| Start 154: testcorenrn_watch::neuron | |
| 132/185 Test #139: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 14.71 sec | |
| Start 155: testcorenrn_watch::coreneuron_gpu_online | |
| 133/185 Test #140: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 14.41 sec | |
| Start 156: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate | |
| 134/185 Test #154: testcorenrn_watch::neuron .......................................... Passed 8.33 sec | |
| Start 157: testcorenrn_watch::coreneuron_gpu_offline | |
| 135/185 Test #42: coreneuron_modtests::datareturn_py_gpu ............................. Passed 66.42 sec | |
| Start 159: testcorenrn_watch::coreneuron_cpu_online | |
| 136/185 Test #159: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 5.47 sec | |
| Start 160: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 137/185 Test #160: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 6.53 sec | |
| Start 161: testcorenrn_watch::coreneuron_cpu_offline | |
| 138/185 Test #161: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 6.42 sec | |
| Start 164: testcorenrn_netstimdirect::direct_netstimdirect | |
| 139/185 Test #44: coreneuron_modtests::test_netmove_py_gpu ........................... Passed 85.39 sec | |
| 140/185 Test #164: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 12.04 sec | |
| Start 165: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 141/185 Test #165: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 8.63 sec | |
| Start 15: parallel::partrans | |
| Start 166: testcorenrn_netstimdirect::compare_results | |
| 142/185 Test #166: testcorenrn_netstimdirect::compare_results ......................... Passed 0.53 sec | |
| 143/185 Test #15: parallel::partrans ................................................. Passed 5.85 sec | |
| Start 16: parallel::netpar | |
| 144/185 Test #137: testcorenrn_vecplay::coreneuron_gpu_offline ........................ Passed 148.26 sec | |
| Start 17: parallel::bas | |
| 145/185 Test #135: testcorenrn_vecplay::coreneuron_gpu_online ......................... Passed 151.42 sec | |
| Start 33: coreneuron_modtests::spikes_mpi_py_cpu | |
| 146/185 Test #16: parallel::netpar ................................................... Passed 2.58 sec | |
| Start 34: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 147/185 Test #33: coreneuron_modtests::spikes_mpi_py_cpu ............................. Passed 7.32 sec | |
| Start 35: coreneuron_modtests::inputpresyn_py_cpu | |
| 148/185 Test #34: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................... Passed 8.96 sec | |
| Start 50: coreneuron_modtests::spikes_mpi_py_gpu | |
| 149/185 Test #156: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate .......... Passed 76.83 sec | |
| Start 51: coreneuron_modtests::spikes_mpi_file_mode_py_gpu | |
| 150/185 Test #35: coreneuron_modtests::inputpresyn_py_cpu ............................ Passed 8.33 sec | |
| Start 52: coreneuron_modtests::inputpresyn_py_gpu | |
| 151/185 Test #17: parallel::bas ...................................................... Passed 20.29 sec | |
| 152/185 Test #52: coreneuron_modtests::inputpresyn_py_gpu ............................ Passed 6.60 sec | |
| Start 148: testcorenrn_vecevent::coreneuron_gpu_offline::preparation | |
| 153/185 Test #51: coreneuron_modtests::spikes_mpi_file_mode_py_gpu ................... Passed 15.30 sec | |
| 154/185 Test #157: testcorenrn_watch::coreneuron_gpu_offline .......................... Passed 90.97 sec | |
| Start 152: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 155/185 Test #148: testcorenrn_vecevent::coreneuron_gpu_offline::preparation .......... Passed 6.50 sec | |
| Start 180: olfactory-bulb-3d::neuron::preparation | |
| 156/185 Test #155: testcorenrn_watch::coreneuron_gpu_online ........................... Passed 94.13 sec | |
| Start 163: testcorenrn_watch::compare_results | |
| 157/185 Test #180: olfactory-bulb-3d::neuron::preparation ............................. Passed 0.46 sec | |
| Start 182: olfactory-bulb-3d::coreneuron_gpu_online::preparation | |
| 158/185 Test #182: olfactory-bulb-3d::coreneuron_gpu_online::preparation .............. Passed 0.28 sec | |
| Start 184: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| 159/185 Test #184: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............. Passed 0.43 sec | |
| Start 58: reduced_dentate::neuron | |
| 160/185 Test #163: testcorenrn_watch::compare_results ................................. Passed 1.97 sec | |
| 161/185 Test #50: coreneuron_modtests::spikes_mpi_py_gpu ............................. Passed 22.71 sec | |
| Start 59: reduced_dentate::coreneuron_cpu | |
| 162/185 Test #152: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 9.82 sec | |
| Start 60: reduced_dentate::coreneuron_gpu | |
| 163/185 Test #58: reduced_dentate::neuron ............................................ Passed 16.77 sec | |
| Start 144: testcorenrn_vecevent::neuron | |
| 164/185 Test #136: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate ........ Passed 199.29 sec | |
| Start 143: testcorenrn_vecplay::compare_results | |
| 165/185 Test #143: testcorenrn_vecplay::compare_results ............................... Passed 2.24 sec | |
| 166/185 Test #144: testcorenrn_vecevent::neuron ....................................... Passed 12.40 sec | |
| Start 69: external_ringtest::coreneuron_cpu_mpi_threads | |
| 167/185 Test #59: reduced_dentate::coreneuron_cpu .................................... Passed 27.04 sec | |
| Start 145: testcorenrn_vecevent::coreneuron_gpu_online | |
| 168/185 Test #60: reduced_dentate::coreneuron_gpu .................................... Passed 34.48 sec | |
| Start 146: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate | |
| Start 61: reduced_dentate::compare_results | |
| 169/185 Test #69: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 13.60 sec | |
| Start 74: external_ringtest::coreneuron_gpu_mpi_threads | |
| 170/185 Test #61: reduced_dentate::compare_results ................................... Passed 1.08 sec | |
| 171/185 Test #145: testcorenrn_vecevent::coreneuron_gpu_online ........................ Passed 28.89 sec | |
| Start 147: testcorenrn_vecevent::coreneuron_gpu_offline | |
| 172/185 Test #146: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate ....... Passed 35.83 sec | |
| Start 149: testcorenrn_vecevent::coreneuron_cpu_online | |
| 173/185 Test #147: testcorenrn_vecevent::coreneuron_gpu_offline ....................... Passed 28.57 sec | |
| Start 150: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 174/185 Test #149: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 9.16 sec | |
| Start 151: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 175/185 Test #151: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 6.45 sec | |
| Start 179: olfactory-bulb-3d::neuron | |
| 176/185 Test #150: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 12.23 sec | |
| Start 181: olfactory-bulb-3d::coreneuron_gpu_online | |
| Start 153: testcorenrn_vecevent::compare_results | |
| 177/185 Test #153: testcorenrn_vecevent::compare_results .............................. Passed 1.15 sec | |
| 178/185 Test #74: external_ringtest::coreneuron_gpu_mpi_threads ...................... Passed 65.17 sec | |
| Start 183: olfactory-bulb-3d::coreneuron_cpu_online | |
| Start 75: external_ringtest::compare_results | |
| 179/185 Test #75: external_ringtest::compare_results ................................. Passed 0.75 sec | |
| 180/185 Test #181: olfactory-bulb-3d::coreneuron_gpu_online ........................... Passed 56.32 sec | |
| Start 14: parallel::subworld | |
| 181/185 Test #14: parallel::subworld ................................................. Passed 4.72 sec | |
| 182/185 Test #179: olfactory-bulb-3d::neuron .......................................... Passed 81.17 sec | |
| 183/185 Test #183: olfactory-bulb-3d::coreneuron_cpu_online ........................... Passed 68.48 sec | |
| Start 185: olfactory-bulb-3d::compare_results | |
| 184/185 Test #185: olfactory-bulb-3d::compare_results ................................. Passed 0.83 sec | |
| 185/185 Test #57: external_nrntest ................................................... Passed 304.27 sec | |
| 100% tests passed, 0 tests failed out of 185 | |
| Total Test time (real) = 580.90 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1661698215:step_script [0Ksection_start:1661698215:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=282588 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=338737 responseStatus[0;m=201 Created token[0;m=8m5CUsyp | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=282644 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=338737 responseStatus[0;m=201 Created token[0;m=8m5CUsyp | |
| section_end:1661698217:upload_artifacts_on_success [0Ksection_start:1661698217:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1661698218:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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