Skip to content

Instantly share code, notes, and snippets.

/vartmpportagesci-physicsespresso++-9999tempbuild.log

Created May 19, 2015 23:50
Show Gist options
  • Star 0 You must be signed in to star a gist
  • Fork 0 You must be signed in to fork a gist
  • Save anonymous/b9e7968cf51fa75e6410 to your computer and use it in GitHub Desktop.
Save anonymous/b9e7968cf51fa75e6410 to your computer and use it in GitHub Desktop.
Download ZIP
/var/tmp/portage/sci-physics/espresso++-9999/temp/build.log
Raw
vartmpportagesci-physicsespresso++-9999tempbuild.log
* Package: sci-physics/espresso++-9999
* Repository: science
* Maintainer: ottxor@gentoo.org sci-physics@gentoo.org
* USE: abi_x86_64 amd64 elibc_glibc kernel_linux python_targets_python2_7 userland_GNU
* FEATURES: ccache preserve-libs sandbox splitdebug userpriv usersandbox
>>> Unpacking source...
* Fetching git://github.com/espressopp/espressopp.git ...
git fetch git://github.com/espressopp/espressopp.git +HEAD:refs/git-r3/HEAD
git symbolic-ref refs/git-r3/sci-physics/espresso++/0/__main__ refs/heads/master
* Checking out git://github.com/espressopp/espressopp.git to /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999 ...
git checkout --quiet master
GIT update -->
repository: git://github.com/espressopp/espressopp.git
at the commit: 3e53c6d9e6c22b5be1e3ff1355dd0c45a13cb057
>>> Source unpacked in /var/tmp/portage/sci-physics/espresso++-9999/work
>>> Preparing source in /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999 ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999 ...
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build"
cmake --no-warn-unused-cli -C /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -DEXTERNAL_BOOST=ON -DEXTERNAL_MPI4PY=ON -DWITH_RC_FILES=OFF -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_INSTALL_DO_STRIP=OFF -DCMAKE_USER_MAKE_RULES_OVERRIDE=/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build/gentoo_rules.cmake -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build/gentoo_toolchain.cmake /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999
Not searching for unused variables given on the command line.
loading initial cache file /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build/gentoo_common_config.cmake
-- The C compiler identification is GNU 5.1.0
-- The CXX compiler identification is GNU 5.1.0
-- Check for working C compiler using: Ninja
-- Check for working C compiler using: Ninja -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler using: Ninja
-- Check for working CXX compiler using: Ninja -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Found MPI_C: /usr/lib64/libmpi.so
-- Found MPI_CXX: /usr/lib64/libmpi_cxx.so;/usr/lib64/libmpi.so
-- Found FFTW3: /usr/lib64/libfftw3.so
-- Found PythonInterp: /var/tmp/portage/sci-physics/espresso++-9999/temp/python2.7/bin/python (found suitable version "2.7.9", minimum required is "2")
-- PYTHON_INCLUDE_PATH = /usr/include/python2.7
-- PYTHON_VERSION = 2.7
-- PYTHON_LIBDIR = /usr/lib64
-- PYTHON_LIBRARIES = /usr/lib64/libpython2.7.so
-- Looking for 3 include files sys/time.h, ..., unistd.h
-- Looking for 3 include files sys/time.h, ..., unistd.h - found
-- Boost version: 1.56.0
-- Found the following Boost libraries:
-- mpi
-- python
-- serialization
-- filesystem
-- mpi4py version: 1.3.1
-- Found MPI4PY: /usr/lib64/python2.7/site-packages/mpi4py/MPI.so (found suitable version "1.3.1", minimum required is "1.3")
PYTHONPATH=/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build:
-- Generate system documentation via /usr/bin/doxygen: make doc
-- <<< Gentoo configuration >>>
Build type Gentoo
Install path /usr
Compiler flags:
C -O2 -pipe -march=native -fomit-frame-pointer
C++ -O2 -pipe -march=native -fomit-frame-pointer
Linker flags:
Executable -Wl,--hash-style=gnu -Wl,-O1 -Wl,--as-needed
Module -Wl,--hash-style=gnu -Wl,-O1 -Wl,--as-needed
Shared -Wl,--hash-style=gnu -Wl,-O1 -Wl,--as-needed
-- Configuring done
-- Generating done
-- Build files have been written to: /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999 ...
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build"
ninja -j5 -l4 -v
[1/194] cd /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build && /usr/bin/cmake -E create_symlink /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src espressopp
[2/194] cd /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build/testsuite/pi_water && /usr/bin/cmake -E create_symlink /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/testsuite/pi_water/conf.gro /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build/testsuite/pi_water/conf.gro && cd /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build/testsuite/pi_water && /usr/bin/cmake -E create_symlink /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/testsuite/pi_water/topol.top /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build/testsuite/pi_water/topol.top && cd /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build/testsuite/pi_water && /usr/bin/cmake -E create_symlink /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/testsuite/pi_water/spcefmatch_tabbond.itp /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build/testsuite/pi_water/spcefmatch_tabbond.itp && cd /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build/testsuite/pi_water && /usr/bin/cmake -E create_symlink /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/testsuite/pi_water/table_O_O.xvg /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build/testsuite/pi_water/table_O_O.xvg && cd /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build/testsuite/pi_water && /usr/bin/cmake -E create_symlink /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/testsuite/pi_water/table_H_O.xvg /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build/testsuite/pi_water/table_H_O.xvg && cd /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build/testsuite/pi_water && /usr/bin/cmake -E create_symlink /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/testsuite/pi_water/table_H_H.xvg /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build/testsuite/pi_water/table_H_H.xvg && cd /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build/testsuite/pi_water && /usr/bin/cmake -E create_symlink /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/testsuite/pi_water/table_a1.xvg /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build/testsuite/pi_water/table_a1.xvg && cd /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build/testsuite/pi_water && /usr/bin/cmake -E create_symlink /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/testsuite/pi_water/table_b1.xvg /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build/testsuite/pi_water/table_b1.xvg
[3/194] cd /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build/testsuite/tabulated && /usr/bin/cmake -E create_symlink /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/testsuite/tabulated/polymer_melt.start /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build/testsuite/tabulated/polymer_melt.start && cd /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build/testsuite/tabulated && /usr/bin/cmake -E create_symlink /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/testsuite/tabulated/result.dat /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build/testsuite/tabulated/result.dat
[4/194] cd /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build/testsuite/ewald && /usr/bin/cmake -E create_symlink /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/testsuite/ewald/deserno_ewald.dat /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build/testsuite/ewald/deserno_ewald.dat && cd /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build/testsuite/ewald && /usr/bin/cmake -E create_symlink /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/testsuite/ewald/ini_struct_deserno.dat /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build/testsuite/ewald/ini_struct_deserno.dat
[5/194] cd /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build/src && /usr/bin/cmake -DTOP_SOURCE_DIR="/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999" -P /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/cmake/gitversion.cmake
-- Found Git: /usr/bin/git (found version "2.3.6")
Current revision is 3e53c6d (dirty)
[6/194] /usr/lib64/ccache/bin/x86_64-pc-linux-gnu-g++ -D_espressopp_EXPORTS -DNDEBUG -O2 -pipe -march=native -fomit-frame-pointer -fPIC -I/usr/include/python2.7 -I/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src -I/usr/lib64/python2.7/site-packages/mpi4py/include -Isrc -I/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/include -MMD -MT src/CMakeFiles/_espressopp.dir/integrator/LangevinBarostat.cpp.o -MF "src/CMakeFiles/_espressopp.dir/integrator/LangevinBarostat.cpp.o.d" -o src/CMakeFiles/_espressopp.dir/integrator/LangevinBarostat.cpp.o -c /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/integrator/LangevinBarostat.cpp
[7/194] /usr/lib64/ccache/bin/x86_64-pc-linux-gnu-g++ -D_espressopp_EXPORTS -DNDEBUG -O2 -pipe -march=native -fomit-frame-pointer -fPIC -I/usr/include/python2.7 -I/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src -I/usr/lib64/python2.7/site-packages/mpi4py/include -Isrc -I/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/include -MMD -MT src/CMakeFiles/_espressopp.dir/storage/DomainDecompositionNonBlocking.cpp.o -MF "src/CMakeFiles/_espressopp.dir/storage/DomainDecompositionNonBlocking.cpp.o.d" -o src/CMakeFiles/_espressopp.dir/storage/DomainDecompositionNonBlocking.cpp.o -c /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/DomainDecompositionNonBlocking.cpp
[8/194] /usr/lib64/ccache/bin/x86_64-pc-linux-gnu-g++ -D_espressopp_EXPORTS -DNDEBUG -O2 -pipe -march=native -fomit-frame-pointer -fPIC -I/usr/include/python2.7 -I/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src -I/usr/lib64/python2.7/site-packages/mpi4py/include -Isrc -I/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/include -MMD -MT src/CMakeFiles/_espressopp.dir/storage/bindings.cpp.o -MF "src/CMakeFiles/_espressopp.dir/storage/bindings.cpp.o.d" -o src/CMakeFiles/_espressopp.dir/storage/bindings.cpp.o -c /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/bindings.cpp
[9/194] /usr/lib64/ccache/bin/x86_64-pc-linux-gnu-g++ -D_espressopp_EXPORTS -DNDEBUG -O2 -pipe -march=native -fomit-frame-pointer -fPIC -I/usr/include/python2.7 -I/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src -I/usr/lib64/python2.7/site-packages/mpi4py/include -Isrc -I/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/include -MMD -MT src/CMakeFiles/_espressopp.dir/storage/Storage.cpp.o -MF "src/CMakeFiles/_espressopp.dir/storage/Storage.cpp.o.d" -o src/CMakeFiles/_espressopp.dir/storage/Storage.cpp.o -c /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.cpp
[10/194] /usr/lib64/ccache/bin/x86_64-pc-linux-gnu-g++ -D_espressopp_EXPORTS -DNDEBUG -O2 -pipe -march=native -fomit-frame-pointer -fPIC -I/usr/include/python2.7 -I/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src -I/usr/lib64/python2.7/site-packages/mpi4py/include -Isrc -I/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/include -MMD -MT src/CMakeFiles/_espressopp.dir/storage/NodeGrid.cpp.o -MF "src/CMakeFiles/_espressopp.dir/storage/NodeGrid.cpp.o.d" -o src/CMakeFiles/_espressopp.dir/storage/NodeGrid.cpp.o -c /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/NodeGrid.cpp
[11/194] /usr/lib64/ccache/bin/x86_64-pc-linux-gnu-g++ -D_espressopp_EXPORTS -DNDEBUG -O2 -pipe -march=native -fomit-frame-pointer -fPIC -I/usr/include/python2.7 -I/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src -I/usr/lib64/python2.7/site-packages/mpi4py/include -Isrc -I/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/include -MMD -MT src/CMakeFiles/_espressopp.dir/storage/DomainDecompositionAdress.cpp.o -MF "src/CMakeFiles/_espressopp.dir/storage/DomainDecompositionAdress.cpp.o.d" -o src/CMakeFiles/_espressopp.dir/storage/DomainDecompositionAdress.cpp.o -c /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/DomainDecompositionAdress.cpp
FAILED: /usr/lib64/ccache/bin/x86_64-pc-linux-gnu-g++ -D_espressopp_EXPORTS -DNDEBUG -O2 -pipe -march=native -fomit-frame-pointer -fPIC -I/usr/include/python2.7 -I/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src -I/usr/lib64/python2.7/site-packages/mpi4py/include -Isrc -I/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/include -MMD -MT src/CMakeFiles/_espressopp.dir/storage/bindings.cpp.o -MF "src/CMakeFiles/_espressopp.dir/storage/bindings.cpp.o.d" -o src/CMakeFiles/_espressopp.dir/storage/bindings.cpp.o -c /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/bindings.cpp
In file included from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.hpp:34:0,
from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/DomainDecomposition.hpp:26,
from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/DomainDecompositionNonBlocking.hpp:26,
from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/bindings.cpp:23:
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/FixedTupleListAdress.hpp:60:30: error: ‘signal2’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal2 <void, std::vector<longint>&, class OutBuffer&>
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/FixedTupleListAdress.hpp:62:30: error: ‘signal2’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal2 <void, ParticleList&, class InBuffer&>
^
In file included from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/DomainDecomposition.hpp:26:0,
from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/DomainDecompositionNonBlocking.hpp:26,
from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/bindings.cpp:23:
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.hpp:235:24: error: ‘signal0’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal0 <void> onParticlesChanged;
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.hpp:236:24: error: ‘signal2’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal2 <void, ParticleList&, class OutBuffer&>
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.hpp:238:24: error: ‘signal2’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal2 <void, ParticleList&, class InBuffer&>
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.hpp:244:24: error: ‘signal0’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal0 <void> onTuplesChanged;
^
FAILED: /usr/lib64/ccache/bin/x86_64-pc-linux-gnu-g++ -D_espressopp_EXPORTS -DNDEBUG -O2 -pipe -march=native -fomit-frame-pointer -fPIC -I/usr/include/python2.7 -I/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src -I/usr/lib64/python2.7/site-packages/mpi4py/include -Isrc -I/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/include -MMD -MT src/CMakeFiles/_espressopp.dir/storage/DomainDecompositionNonBlocking.cpp.o -MF "src/CMakeFiles/_espressopp.dir/storage/DomainDecompositionNonBlocking.cpp.o.d" -o src/CMakeFiles/_espressopp.dir/storage/DomainDecompositionNonBlocking.cpp.o -c /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/DomainDecompositionNonBlocking.cpp
In file included from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.hpp:34:0,
from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/DomainDecomposition.hpp:26,
from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/DomainDecompositionNonBlocking.cpp:31:
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/FixedTupleListAdress.hpp:60:30: error: ‘signal2’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal2 <void, std::vector<longint>&, class OutBuffer&>
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/FixedTupleListAdress.hpp:62:30: error: ‘signal2’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal2 <void, ParticleList&, class InBuffer&>
^
In file included from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/DomainDecomposition.hpp:26:0,
from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/DomainDecompositionNonBlocking.cpp:31:
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.hpp:235:24: error: ‘signal0’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal0 <void> onParticlesChanged;
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.hpp:236:24: error: ‘signal2’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal2 <void, ParticleList&, class OutBuffer&>
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.hpp:238:24: error: ‘signal2’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal2 <void, ParticleList&, class InBuffer&>
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.hpp:244:24: error: ‘signal0’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal0 <void> onTuplesChanged;
^
In file included from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/DomainDecompositionNonBlocking.cpp:33:0:
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/bc/BC.hpp:150:24: error: ‘signal0’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal0 <void> onBoxDimensionsChanged;
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/DomainDecompositionNonBlocking.cpp: In member function ‘boost::mpi::request espressopp::storage::DomainDecompositionNonBlocking::isendParticles(espressopp::OutBuffer&, espressopp::ParticleList&, espressopp::longint)’:
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/DomainDecompositionNonBlocking.cpp:372:35: error: ‘beforeSendParticles’ was not declared in this scope
beforeSendParticles(list, data); // this also takes care of AdResS AT Particles
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/DomainDecompositionNonBlocking.cpp: In member function ‘void espressopp::storage::DomainDecompositionNonBlocking::irecvParticles_finish(espressopp::InBuffer&, espressopp::ParticleList&)’:
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/DomainDecompositionNonBlocking.cpp:403:36: error: ‘afterRecvParticles’ was not declared in this scope
afterRecvParticles(list, data); // this also takes care of AdResS AT Particles
^
FAILED: /usr/lib64/ccache/bin/x86_64-pc-linux-gnu-g++ -D_espressopp_EXPORTS -DNDEBUG -O2 -pipe -march=native -fomit-frame-pointer -fPIC -I/usr/include/python2.7 -I/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src -I/usr/lib64/python2.7/site-packages/mpi4py/include -Isrc -I/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/include -MMD -MT src/CMakeFiles/_espressopp.dir/integrator/LangevinBarostat.cpp.o -MF "src/CMakeFiles/_espressopp.dir/integrator/LangevinBarostat.cpp.o.d" -o src/CMakeFiles/_espressopp.dir/integrator/LangevinBarostat.cpp.o -c /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/integrator/LangevinBarostat.cpp
In file included from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/integrator/Extension.hpp:31:0,
from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/integrator/LangevinBarostat.hpp:30,
from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/integrator/LangevinBarostat.cpp:24:
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/integrator/MDIntegrator.hpp:83:26: error: ‘signal0’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal0 <void> runInit; // initialization of run()
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/integrator/MDIntegrator.hpp:84:26: error: ‘signal0’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal0 <void> recalc1; // inside recalc, before updateForces()
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/integrator/MDIntegrator.hpp:85:26: error: ‘signal0’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal0 <void> recalc2; // inside recalc, after updateForces()
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/integrator/MDIntegrator.hpp:86:26: error: ‘signal0’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal0 <void> befIntP; // before integrate1()
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/integrator/MDIntegrator.hpp:87:26: error: ‘signal1’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal1 <void, real&> inIntP; // inside end of integrate1()
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/integrator/MDIntegrator.hpp:88:26: error: ‘signal0’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal0 <void> aftIntP; // after integrate1()
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/integrator/MDIntegrator.hpp:89:26: error: ‘signal0’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal0 <void> aftInitF; // after initForces()
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/integrator/MDIntegrator.hpp:90:26: error: ‘signal0’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal0 <void> aftCalcF; // after calcForces()
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/integrator/MDIntegrator.hpp:91:26: error: ‘signal0’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal0 <void> befIntV; // before integrate2()
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/integrator/MDIntegrator.hpp:92:26: error: ‘signal0’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal0 <void> aftIntV; // after integrate2()
^
In file included from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.hpp:34:0,
from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/integrator/LangevinBarostat.cpp:28:
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/FixedTupleListAdress.hpp:60:30: error: ‘signal2’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal2 <void, std::vector<longint>&, class OutBuffer&>
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/FixedTupleListAdress.hpp:62:30: error: ‘signal2’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal2 <void, ParticleList&, class InBuffer&>
^
In file included from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/integrator/LangevinBarostat.cpp:28:0:
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.hpp:235:24: error: ‘signal0’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal0 <void> onParticlesChanged;
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.hpp:236:24: error: ‘signal2’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal2 <void, ParticleList&, class OutBuffer&>
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.hpp:238:24: error: ‘signal2’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal2 <void, ParticleList&, class InBuffer&>
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.hpp:244:24: error: ‘signal0’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal0 <void> onTuplesChanged;
^
In file included from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/integrator/LangevinBarostat.cpp:35:0:
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/bc/BC.hpp:150:24: error: ‘signal0’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal0 <void> onBoxDimensionsChanged;
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/integrator/LangevinBarostat.cpp: In member function ‘virtual void espressopp::integrator::LangevinBarostat::connect()’:
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/integrator/LangevinBarostat.cpp:86:30: error: ‘class espressopp::integrator::MDIntegrator’ has no member named ‘runInit’
_runInit = integrator->runInit.connect( boost::bind(&LangevinBarostat::initialize, this));
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/integrator/LangevinBarostat.cpp:88:30: error: ‘class espressopp::integrator::MDIntegrator’ has no member named ‘befIntP’
_befIntP = integrator->befIntP.connect( boost::bind(&LangevinBarostat::upd_Vp, this));
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/integrator/LangevinBarostat.cpp:90:29: error: ‘class espressopp::integrator::MDIntegrator’ has no member named ‘inIntP’
_inIntP = integrator->inIntP.connect( boost::bind(&LangevinBarostat::updDisplacement, this, _1));
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/integrator/LangevinBarostat.cpp:92:30: error: ‘class espressopp::integrator::MDIntegrator’ has no member named ‘aftIntV’
_aftIntV = integrator->aftIntV.connect( boost::bind(&LangevinBarostat::upd_pV, this));
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/integrator/LangevinBarostat.cpp:94:31: error: ‘class espressopp::integrator::MDIntegrator’ has no member named ‘aftCalcF’
_aftCalcF = integrator->aftCalcF.connect( boost::bind(&LangevinBarostat::updForces, this));
^
FAILED: /usr/lib64/ccache/bin/x86_64-pc-linux-gnu-g++ -D_espressopp_EXPORTS -DNDEBUG -O2 -pipe -march=native -fomit-frame-pointer -fPIC -I/usr/include/python2.7 -I/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src -I/usr/lib64/python2.7/site-packages/mpi4py/include -Isrc -I/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/include -MMD -MT src/CMakeFiles/_espressopp.dir/storage/DomainDecompositionAdress.cpp.o -MF "src/CMakeFiles/_espressopp.dir/storage/DomainDecompositionAdress.cpp.o.d" -o src/CMakeFiles/_espressopp.dir/storage/DomainDecompositionAdress.cpp.o -c /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/DomainDecompositionAdress.cpp
In file included from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.hpp:34:0,
from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/DomainDecompositionAdress.hpp:26,
from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/DomainDecompositionAdress.cpp:32:
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/FixedTupleListAdress.hpp:60:30: error: ‘signal2’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal2 <void, std::vector<longint>&, class OutBuffer&>
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/FixedTupleListAdress.hpp:62:30: error: ‘signal2’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal2 <void, ParticleList&, class InBuffer&>
^
In file included from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/DomainDecompositionAdress.hpp:26:0,
from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/DomainDecompositionAdress.cpp:32:
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.hpp:235:24: error: ‘signal0’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal0 <void> onParticlesChanged;
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.hpp:236:24: error: ‘signal2’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal2 <void, ParticleList&, class OutBuffer&>
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.hpp:238:24: error: ‘signal2’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal2 <void, ParticleList&, class InBuffer&>
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.hpp:244:24: error: ‘signal0’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal0 <void> onTuplesChanged;
^
In file included from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/DomainDecompositionAdress.cpp:33:0:
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/bc/BC.hpp:150:24: error: ‘signal0’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal0 <void> onBoxDimensionsChanged;
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/DomainDecompositionAdress.cpp: In member function ‘virtual void espressopp::storage::DomainDecompositionAdress::cellAdjust()’:
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/DomainDecompositionAdress.cpp:231:26: error: ‘onParticlesChanged’ was not declared in this scope
onParticlesChanged();
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/DomainDecompositionAdress.cpp: In member function ‘virtual void espressopp::storage::DomainDecompositionAdress::decompose()’:
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/DomainDecompositionAdress.cpp:341:21: error: ‘onTuplesChanged’ was not declared in this scope
onTuplesChanged(); // for AdResS, renamed to not confuse with bonds
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/DomainDecompositionAdress.cpp:345:24: error: ‘onParticlesChanged’ was not declared in this scope
onParticlesChanged();
^
FAILED: /usr/lib64/ccache/bin/x86_64-pc-linux-gnu-g++ -D_espressopp_EXPORTS -DNDEBUG -O2 -pipe -march=native -fomit-frame-pointer -fPIC -I/usr/include/python2.7 -I/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src -I/usr/lib64/python2.7/site-packages/mpi4py/include -Isrc -I/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/include -MMD -MT src/CMakeFiles/_espressopp.dir/storage/Storage.cpp.o -MF "src/CMakeFiles/_espressopp.dir/storage/Storage.cpp.o.d" -o src/CMakeFiles/_espressopp.dir/storage/Storage.cpp.o -c /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.cpp
In file included from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.hpp:34:0,
from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.cpp:30:
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/FixedTupleListAdress.hpp:60:30: error: ‘signal2’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal2 <void, std::vector<longint>&, class OutBuffer&>
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/FixedTupleListAdress.hpp:62:30: error: ‘signal2’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal2 <void, ParticleList&, class InBuffer&>
^
In file included from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.cpp:30:0:
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.hpp:235:24: error: ‘signal0’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal0 <void> onParticlesChanged;
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.hpp:236:24: error: ‘signal2’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal2 <void, ParticleList&, class OutBuffer&>
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.hpp:238:24: error: ‘signal2’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal2 <void, ParticleList&, class InBuffer&>
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.hpp:244:24: error: ‘signal0’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal0 <void> onTuplesChanged;
^
In file included from /var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.cpp:31:0:
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/bc/BC.hpp:150:24: error: ‘signal0’ in namespace ‘boost::signals2’ does not name a template type
boost::signals2::signal0 <void> onBoxDimensionsChanged;
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.cpp: In member function ‘int espressopp::storage::Storage::removeParticle(espressopp::longint)’:
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.cpp:300:28: error: ‘onParticlesChanged’ was not declared in this scope
onParticlesChanged();
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.cpp: In member function ‘void espressopp::storage::Storage::removeAllParticles()’:
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.cpp:320:26: error: ‘onParticlesChanged’ was not declared in this scope
onParticlesChanged();
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.cpp: In member function ‘void espressopp::storage::Storage::sendParticles(espressopp::ParticleList&, espressopp::longint)’:
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.cpp:505:37: error: ‘beforeSendParticles’ was not declared in this scope
beforeSendParticles(list, data); // this also takes care of AdResS AT Particles
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.cpp: In member function ‘void espressopp::storage::Storage::recvParticles(espressopp::ParticleList&, espressopp::longint)’:
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.cpp:538:38: error: ‘afterRecvParticles’ was not declared in this scope
afterRecvParticles(list, data); // this also takes care of AdResS AT Particles
^
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.cpp: In member function ‘virtual void espressopp::storage::Storage::decompose()’:
/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999/src/storage/Storage.cpp:559:26: error: ‘onParticlesChanged’ was not declared in this scope
onParticlesChanged();
^
ninja: build stopped: subcommand failed.
* ERROR: sci-physics/espresso++-9999::science failed (compile phase):
* (no error message)
*
* Call stack:
* ebuild.sh, line 93: Called src_compile
* environment, line 4124: Called cmake-utils_src_compile
* environment, line 1057: Called _execute_optionally 'src_compile'
* environment, line 296: Called enable_cmake-utils_src_compile
* environment, line 1254: Called cmake-utils_src_make
* environment, line 1072: Called ninja_src_make
* environment, line 3053: Called die
* The specific snippet of code:
* "$@" || die
*
* If you need support, post the output of `emerge --info '=sci-physics/espresso++-9999::science'`,
* the complete build log and the output of `emerge -pqv '=sci-physics/espresso++-9999::science'`.
* The complete build log is located at '/var/tmp/portage/sci-physics/espresso++-9999/temp/build.log'.
* The ebuild environment file is located at '/var/tmp/portage/sci-physics/espresso++-9999/temp/environment'.
* Working directory: '/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999_build'
* S: '/var/tmp/portage/sci-physics/espresso++-9999/work/espresso++-9999'
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment