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baobabprince / heb.date.r
Created December 6, 2020 22:15
get hebrew date from internet
# get hebrew date from internet
hebrew.date <- function(){
api <- httr::GET("https://www.hebcal.com/etc/hdate-he.js")
html <- httr::content(api, as = "text")
heb <- gsub("\\w" , "" , html, perl = T)
gsub("[[:punct:]\n]","" ,heb)
}
hebrew.date()
@baobabprince
baobabprince / DB5.002.html
Created December 21, 2021 15:59
This file has been truncated, but you can view the full file.
<!DOCTYPE html>
<html xmlns="http://www.w3.org/1999/xhtml"><head>
<meta charset="utf-8">
<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
<meta name="generator" content="pandoc">
<meta name="author" content=" Sheba Microbiome Center">
<meta name="date" content="2021-12-21">
@baobabprince
baobabprince / hm_for Nina.rmd
Last active June 27, 2022 13:23
---
title: "heatmap"
author: "Rotem Hadar"
date: "27/06/2022"
output: html_document
---
```{r}
library(tidyverse)
@baobabprince
baobabprince / hm_for Nina.rmd
Last active June 27, 2022 14:32
---
title: "heatmap"
author: "Rotem Hadar"
date: "27/06/2022"
output: html_document
---
```{r}
library(tidyverse)
@baobabprince
baobabprince / log_sensibo.R
Created July 26, 2022 15:40
sensorID = "Your sensibo ID"
apikey = readLines("sensibo.api")
## commented lines run only once
# file.create("./sensibo.csv")
# data <- jsonlite::fromJSON(url)$result
# write(as.character(names(data)), "./sensibo.csv", sep=",")
url = paste0("https://home.sensibo.com/api/v2/pods/", sensorID, "/measurements?apiKey=", apikey)
while(1 == 1){
data <- jsonlite::fromJSON(url)$result
text <- paste(as.character(unlist(data)), collapse = ",")
@baobabprince
baobabprince / DB14.310_microbiome_data.csv
Created September 12, 2022 13:03
Microbiome data for sample: DB14.310 . ASV column represent the sequence of specific bacteria. thanthere is the Taxonomic levels names. and the prevelance of specific bacteria in your gut and in the healthy population in israel.
We can make this file beautiful and searchable if this error is corrected: Illegal quoting in line 1.
[{"ASV":"TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGATACTGGATGTCTTGAGTGCAGTTGAGGCAGGCGGAATTCGTGG","Kingdom":"k__Bacteria","Phyla":" p__Bacteroidetes","Class":" c__Bacteroidia","Order":" o__Bacteroidales","Family":" f__Bacteroidaceae","Genus":" g__Bacteroides","Species":" s__","You":0.148,"Population":0.0408,"link":"http://dbbact.org/search_results?sequence=TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGATACTGGATGTCTTGAGTGCAGTTGAGGCAGGCGGAATTCGTGG"},{"ASV":"TACGGAGGGTGCAAGCGTTGTCCGGAATCATTGGGCGTAAAGAGTTCGTAGGTGGTTTGTTAAGTTTGGTGTTAAATGCAGAGGCTCAACTTCTGTTCGGCATCGGATACTGGCAGACTAGAATGCGGTAGAGGTAAAGGGAATTCCTGG","Kingdom":"k__Bacteria","Phyla":" p__Cyanobacteria","Class":" c__4C0d-2","Order":" o__YS2","Family":" f__","Genus":" g__","Species":" s__","You":0.0798,"Population":0.0074,"link":"http://dbbact.org/search_results?sequence=TACGGAGGGTGCAAGCGTTGTCCGGAATCATTGGGCGTAAAGAGTTCGTAGGTGGTTTGTTAAGTTT
@baobabprince
baobabprince / DB14.310_microbiome_data.csv
Created September 12, 2022 13:06
Microbiome data for sample: DB14.310 . ASV column represent the sequence of specific bacteria. thanthere is the Taxonomic levels names. and the prevelance of specific bacteria in your gut and in the healthy population in israel.
We can make this file beautiful and searchable if this error is corrected: Unclosed quoted field in line 3.
"","ASV","Kingdom","Phyla","Class","Order","Family","Genus","Species","You","Population","link"
"1","TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGATACTGGATGTCTTGAGTGCAGTTGAGGCAGGCGGAATTCGTGG","k__Bacteria"," p__Bacteroidetes"," c__Bacteroidia"," o__Bacteroidales"," f__Bacteroidaceae"," g__Bacteroides"," s__",0.14798418972332,0.0408366084237244,"http://dbbact.org/search_results?sequence=TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGATACTGGATGTCTTGAGTGCAGTTGAGGCAGGCGGAATTCGTGG"
"2","TACGGAGGGTGCAAGCGTTGTCCGGAATCATTGGGCGTAAAGAGTTCGTAGGTGGTTTGTTAAGTTTGGTGTTAAATGCAGAGGCTCAACTTCTGTTCGGCATCGGATACTGGCAGACTAGAATGCGGTAGAGGTAAAGGGAATTCCTGG","k__Bacteria"," p__Cyanobacteria"," c__4C0d-2"," o__YS2"," f__"," g__"," s__",0.0798418972332016,0.00740522149833383,"http://dbbact.org/search_results?sequence=TACGGAGGGTGCAAGCGTTGTCCGGAATCATTGGGCGTAAAGAGTTCGTAGGTGGTTTGTTAAGTTTGGTGTTAAATGCAGAGGCTCAACTTCTGTTCGGCATCG
@baobabprince
baobabprince / DB14.310_microbiome_data.csv
Created September 12, 2022 13:07
Microbiome data for sample: DB14.310 . ASV column represent the sequence of specific bacteria. thanthere is the Taxonomic levels names. and the prevelance of specific bacteria in your gut and in the healthy population in israel.
We can make this file beautiful and searchable if this error is corrected: Unclosed quoted field in line 3.
"","ASV","Kingdom","Phyla","Class","Order","Family","Genus","Species","You","Population","link"
"1","TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGATACTGGATGTCTTGAGTGCAGTTGAGGCAGGCGGAATTCGTGG","k__Bacteria"," p__Bacteroidetes"," c__Bacteroidia"," o__Bacteroidales"," f__Bacteroidaceae"," g__Bacteroides"," s__",0.14798418972332,0.0408366084237244,"http://dbbact.org/search_results?sequence=TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGATACTGGATGTCTTGAGTGCAGTTGAGGCAGGCGGAATTCGTGG"
"2","TACGGAGGGTGCAAGCGTTGTCCGGAATCATTGGGCGTAAAGAGTTCGTAGGTGGTTTGTTAAGTTTGGTGTTAAATGCAGAGGCTCAACTTCTGTTCGGCATCGGATACTGGCAGACTAGAATGCGGTAGAGGTAAAGGGAATTCCTGG","k__Bacteria"," p__Cyanobacteria"," c__4C0d-2"," o__YS2"," f__"," g__"," s__",0.0798418972332016,0.00740522149833383,"http://dbbact.org/search_results?sequence=TACGGAGGGTGCAAGCGTTGTCCGGAATCATTGGGCGTAAAGAGTTCGTAGGTGGTTTGTTAAGTTTGGTGTTAAATGCAGAGGCTCAACTTCTGTTCGGCATCG
@baobabprince
baobabprince / DB10.071_microbiome_data.csv
Created September 12, 2022 13:15
Microbiome data for sample: DB10.071 . ASV column represent the sequence of specific bacteria. thanthere is the Taxonomic levels names. and the prevelance of specific bacteria in your gut and in the healthy population in israel.
We can make this file beautiful and searchable if this error is corrected: Unclosed quoted field in line 3.
"","ASV","Kingdom","Phyla","Class","Order","Family","Genus","Species","You","Population","link"
"1","TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGATACTGGATATCTTGAGTGCAGTTGAGGCAGGCGGAATTCGTGG","k__Bacteria"," p__Bacteroidetes"," c__Bacteroidia"," o__Bacteroidales"," f__Bacteroidaceae"," g__Bacteroides"," s__",0.17673118865867,0.0646793890123089,"http://dbbact.org/search_results?sequence=TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGATACTGGATATCTTGAGTGCAGTTGAGGCAGGCGGAATTCGTGG"
"2","TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGG","k__Bacteria"," p__Bacteroidetes"," c__Bacteroidia"," o__Bacteroidales"," f__Bacteroidaceae"," g__Bacteroides",NA,0.104007633587786,0.0185463269872382,"http://dbbact.org/search_results?sequence=TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTG
@baobabprince
baobabprince / DB10.077_microbiome_data.csv
Created September 12, 2022 13:23
Microbiome data for sample: DB10.077 . ASV column represent the sequence of specific bacteria. thanthere is the Taxonomic levels names. and the prevelance of specific bacteria in your gut and in the healthy population in israel.
We can make this file beautiful and searchable if this error is corrected: Unclosed quoted field in line 3.
"","ASV","Kingdom","Phyla","Class","Order","Family","Genus","Species","You","Population","link"
"1","TACGGAAGGTCCGGGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCCGGAGATTAAGCGTGTTGTGAAATGTAGACGCTCAACGTCTGCACTGCAGCGCGAACTGGTTTCCTTGAGTACGCACAAAGTGGGCGGAATTCGTGG","k__Bacteria"," p__Bacteroidetes"," c__Bacteroidia"," o__Bacteroidales"," f__Prevotellaceae"," g__Prevotella"," s__copri",0.538720538720539,0.131456045391647,"http://dbbact.org/search_results?sequence=TACGGAAGGTCCGGGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCCGGAGATTAAGCGTGTTGTGAAATGTAGACGCTCAACGTCTGCACTGCAGCGCGAACTGGTTTCCTTGAGTACGCACAAAGTGGGCGGAATTCGTGG"
"2","TACGGAAGGTCCGGGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCCGGAGATTAAGCGTGTTGTGAAATGTAGATGCTCAACGTCTGCACTGCAGCGCGAACTGGTTTCCTTGAGTACGCACAAAGTGGGCGGAATTCGTGG","k__Bacteria"," p__Bacteroidetes"," c__Bacteroidia"," o__Bacteroidales"," f__Prevotellaceae"," g__Prevotella"," s__copri",0.116863075196409,0.0541314022363053,"http://dbbact.org/search_results?sequence=TACGGAAGGTCCGGGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCCGGAGA