Skip to content

Instantly share code, notes, and snippets.

@boegel

boegel/easybuild_test_report_15317_easybuilders_preasybuild-easyconfigs_20225021-UTC-14-50-47.md

Created April 21, 2022 14:50
Show Gist options
  • Save boegel/bdfcf59cd5d4bae4c8c4ed26de8968a5 to your computer and use it in GitHub Desktop.
Save boegel/bdfcf59cd5d4bae4c8c4ed26de8968a5 to your computer and use it in GitHub Desktop.
Download ZIP
EasyBuild test report for easybuilders/easybuild-easyconfigs PR(s) #15317
Raw
easybuild_test_report_15317_easybuilders_preasybuild-easyconfigs_20225021-UTC-14-50-47.md

Test report for PR(s) easybuilders/easybuild-easyconfigs#15317

Test result

Build succeeded for 4 out of 4 (4 easyconfigs in total)

Overview of tested easyconfigs (in order)

  • SUCCESS FastANI-1.33-intel-compilers-2021.4.0.eb
  • SUCCESS FastTree-2.1.11-GCCcore-11.2.0.eb
  • SUCCESS HMMER-3.3.2-iimpi-2021b.eb
  • SUCCESS GTDB-Tk-2.0.0-intel-2021b.eb

Time info

  • start: Thu, 21 Apr 2022 14:46:32 +0000 (UTC)
  • end: Thu, 21 Apr 2022 14:50:47 +0000 (UTC)

EasyBuild info

  • easybuild-framework version: 4.5.4.dev0
  • easybuild-easyblocks version: 4.5.4.dev0
  • command line:
eb -dfr -u --from-pr 15317
  • full configuration (includes defaults):
--accept-eula-for='.*'
--accept-eula=''
--allow-loaded-modules='EasyBuild'
--buildpath='/tmp/vsc40023/easybuild_build'
--check-ebroot-env-vars='warn'
--cleanup-builddir
--cleanup-easyconfigs
--cleanup-tmpdir
--color='auto'
--configfiles='/user/gent/400/vsc40023/.config/easybuild/config.cfg'
--container-type='singularity'
--containerpath='/user/gent/400/vsc40023/eb_scratch/CO7/haswell-ib/containers'
--debug
--default-opt-level='defaultopt'
--detect-loaded-modules='error'
--disable-add-dummy-to-minimal-toolchains
--disable-add-system-to-minimal-toolchains
--disable-allow-modules-tool-mismatch
--disable-allow-use-as-root-and-accept-consequences
--disable-avail-cfgfile-constants
--disable-avail-easyconfig-constants
--disable-avail-easyconfig-licenses
--disable-avail-easyconfig-params
--disable-avail-easyconfig-templates
--disable-avail-hooks
--disable-avail-module-naming-schemes
--disable-avail-modules-tools
--disable-avail-repositories
--disable-check-conflicts
--disable-check-contrib
--disable-check-eb-deps
--disable-check-github
--disable-check-style
--disable-consider-archived-easyconfigs
--disable-container-build-image
--disable-containerize
--disable-copy-ec
--disable-debug-lmod
--disable-devel
--disable-dry-run
--disable-dry-run-short
--disable-dump-autopep8
--disable-dump-env-script
--disable-enforce-checksums
--disable-experimental
--disable-extended-dry-run
--disable-fetch
--disable-fix-deprecated-easyconfigs
--disable-group-writable-installdir
--disable-hidden
--disable-ignore-checksums
--disable-ignore-index
--disable-ignore-locks
--disable-ignore-osdeps
--disable-ignore-test-failure
--disable-info
--disable-insecure-download
--disable-install-github-token
--disable-install-latest-eb-release
--disable-job
--disable-last-log
--disable-list-toolchains
--disable-logtostdout
--disable-minimal-toolchains
--disable-missing-modules
--disable-module-depends-on
--disable-module-extensions
--disable-module-only
--disable-new-branch-github
--disable-new-pr
--disable-package
--disable-parallel-extensions-install
--disable-pretend
--disable-preview-pr
--disable-quiet
--disable-read-only-installdir
--disable-rebuild
--disable-recursive-module-unload
--disable-regtest
--disable-remove-ghost-install-dirs
--disable-rpath
--disable-sanity-check-only
--disable-sequential
--disable-set-default-module
--disable-set-gid-bit
--disable-show-config
--disable-show-default-configfiles
--disable-show-default-moduleclasses
--disable-show-ec
--disable-show-full-config
--disable-show-system-info
--disable-skip
--disable-skip-extensions
--disable-skip-test-cases
--disable-skip-test-step
--disable-sticky-bit
--disable-terse
--disable-try-ignore-versionsuffixes
--disable-try-update-deps
--disable-unit-testing-mode
--disable-update-modules-tool-cache
--disable-use-existing-modules
--disable-verify-easyconfig-filenames
--env-for-shebang='/usr/bin/env'
--envvars-user-modules='HOME'
--extended-dry-run-ignore-errors
--fixed-installdir-naming-scheme
--force
--from-pr='15317'
--generate-devel-module
--github-user='boegel'
--hooks='/data/gent/400/vsc40023/eb_hooks.py'
--ignore-dirs='.git,.svn'
--include-easyblocks-from-pr=''
--include-easyblocks=''
--include-module-naming-schemes=''
--include-toolchains=''
--index-max-age='604800'
--installpath='/user/gent/400/vsc40023/eb_scratch/CO7/haswell-ib'
--job-backend='Slurm'
--job-max-jobs='0'
--job-max-walltime='24'
--job-output-dir='/kyukon/home/gent/400/vsc40023'
--job-polling-interval='30.0'
--lib-lib64-symlink
--lib64-fallback-sanity-check
--lib64-lib-symlink
--local-var-naming-check='error'
--logfile-format='easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'
--map-toolchains
--max-fail-ratio-adjust-permissions='0.5'
--minimal-build-env='CC:gcc,CXX:g++'
--module-naming-scheme='EasyBuildMNS'
--module-syntax='Lua'
--moduleclasses='base,astro,bio,cae,chem,compiler,data,debugger,devel,geo,ide,lang,lib,math,mpi,numlib,perf,quantum,phys,system,toolchain,tools,vis'
--modules-tool-version-check
--modules-tool='Lmod'
--mpi-tests
--output-format='txt'
--output-style='auto'
--package-naming-scheme='EasyBuildPNS'
--package-release='1'
--package-tool-options=''
--package-tool='fpm'
--package-type='rpm'
--packagepath='/user/gent/400/vsc40023/eb_scratch/CO7/haswell-ib/packages'
--pr-target-account='easybuilders'
--pr-target-branch='develop'
--pre-create-installdir
--prefix='/user/gent/400/vsc40023/eb_scratch/CO7/haswell-ib'
--repository='FileRepository'
--repositorypath='/user/gent/400/vsc40023/eb_scratch/CO7/haswell-ib/ebfiles_repo'
--robot-paths=''
--robot='/data/gent/400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-4.5.4.dev0-py2.7.egg/easybuild/easyconfigs'
--show-progress-bar
--sourcepath='/data/gent/400/vsc40023/EasyBuild/sources:/apps/gent/source'
--strict='warn'
--subdir-modules='modules'
--subdir-software='software'
--suffix-modules-path='all'
--trace
--upload-test-report
--use-ccache='False'
--use-f90cache='False'
--wait-on-lock-interval='60'
--wait-on-lock-limit='0'

System info

  • core count: 10
  • cpu arch: x86_64
  • cpu arch name: haswell
  • cpu model: Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz
  • cpu speed: 3300.0
  • cpu vendor: Intel
  • gcc version: Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/lto-wrapper; Target: x86_64-redhat-linux; Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux; Thread model: posix; gcc version 4.8.5 20150623 (Red Hat 4.8.5-44) (GCC) ;
  • glibc version: 2.17
  • hostname: node2615.swalot.os
  • os name: CentOS Linux
  • os type: Linux
  • os version: 7.9.2009
  • platform name: x86_64-unknown-linux
  • python version: 3.6.8 (default, Nov 16 2020, 16:55:22) ; [GCC 4.8.5 20150623 (Red Hat 4.8.5-44)]
  • system gcc path: /usr/bin/gcc
  • system python path: /usr/bin/python
  • total memory: 128589

List of loaded modules

  • cluster/swalot

Environment

BASH_FUNC_ml() = () {  eval $($LMOD_DIR/ml_cmd "$@")
}
BASH_FUNC_module() = () {  eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh)
}
CARGO_HOME = /scratch/gent/400/vsc40023/.cargo
CCACHE_COMPILERCHECK = echo %compiler%; %compiler% -v; %compiler% -dumpmachine
CCACHE_COMPRESS = true
CCACHE_MAXFILES = 1000000
CCACHE_MAXSIZE = 0
CCACHE_NLEVELS = 4
EASYBUILD_ACCEPT_EULA_FOR = .*
EASYBUILD_BUILDPATH = /tmp/vsc40023/easybuild_build
EASYBUILD_DEBUG = 1
EASYBUILD_DETECT_LOADED_MODULES = error
EASYBUILD_GITHUB_USER = boegel
EASYBUILD_HOOKS = /data/gent/400/vsc40023/eb_hooks.py
EASYBUILD_JOB_BACKEND = Slurm
EASYBUILD_LOCAL_VAR_NAMING_CHECK = error
EASYBUILD_PREFIX = /user/gent/400/vsc40023/eb_scratch/CO7/haswell-ib
EASYBUILD_SOURCEPATH = /data/gent/400/vsc40023/EasyBuild/sources:/apps/gent/source
EASYBUILD_TRACE = 1
EB_PYTHON = python3
EB_SCRIPT_PATH = /data/gent/400/vsc40023/easybuild_easy_installed/bin/eb
EB_VERBOSE = 1
F90CACHE_NLEVELS = 4
FANCYLOGGER_IGNORE_MPI4PY = 1
FPATH = /usr/share/lmod/lmod/init/ksh_funcs
HISTCONTROL = ignoredups
HISTSIZE = 1000
HOME = /user/gent/400/vsc40023
HOSTNAME = node2615.swalot.os
HPCUGENT_FAMILY_CLUSTER = cluster
HPCUGENT_FAMILY_CLUSTER_VERSION = swalot
LANG = en_US.UTF-8
LESSOPEN = ||/usr/bin/lesspipe.sh %s
LIBGL_DEBUG = verbose
LMOD_ADMIN_FILE = /etc/modulefiles/rhel8_deprecated_toolchains.list
LMOD_ANCIENT_TIME = 604800
LMOD_CMD = /usr/share/lmod/lmod/libexec/lmod
LMOD_DIR = /usr/share/lmod/lmod/libexec
LMOD_FAMILY_CLUSTER = cluster
LMOD_FAMILY_CLUSTER_VERSION = swalot
LMOD_PKG = /usr/share/lmod/lmod
LMOD_ROOT = /usr/share/lmod
LMOD_SETTARG_FULL_SUPPORT = no
LMOD_SHORT_TIME = 86400
LMOD_SYSTEM_NAME = CO7-haswell
LMOD_VERSION = 8.4.12
LOADEDMODULES = cluster/swalot
LOGNAME = vsc40023
LS_COLORS = 
MAIL = /var/spool/mail/vsc40023
MANPATH = :
MODULEPATH = /user/gent/400/vsc40023/eb_scratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc
MODULESHOME = /usr/share/lmod/lmod
OMP_PROC_BIND = TRUE
PATH = /user/gent/400/vsc40023/.yarn/bin:/user/gent/400/vsc40023/.config/yarn/global/node_modules/.bin:/data/gent/400/vsc40023/easybuild_easy_installed/bin:/user/gent/400/vsc40023/bin:/usr/libexec/jobcli:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin
PBS_DEFAULT = SLURM_NOT_TORQUE_PBS
PWD = /user/gent/400/vsc40023
PYTHONOPTIMIZE = 1
PYTHONPATH = /user/gent/400/vsc40023/py3/lib/python3.6/site-packages:/user/gent/400/vsc40023/.local/python-dateutil/lib/python2.7/site-packages/:/user/gent/400/vsc40023/.local/keyring/lib/python2.7/site-packages:/data/gent/400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages:
PYTHON_EGG_CACHE = /user/gent/400/vsc40023/eb_scratch/python-eggs
SHELL = /bin/bash
SHLVL = 2
SLURM_CLUSTERS = swalot
SLURM_CONF = /etc/slurm/slurm.conf_swalot
SLURM_JOB_ID = 34267144
SSH_CLIENT = 10.141.19.15 52392 22
SSH_CONNECTION = 10.141.19.15 52392 10.141.19.15 22
SSH_TTY = /dev/pts/1
TERM = screen
TEST_BASH_SOURCE = /user/gent/400/vsc40023/.bashrc /user/gent/400/vsc40023/.bash_profile
USER = vsc40023
VSCPROFILELOADED = 1
VSC_ARCH_LOCAL = haswell
VSC_ARCH_SUFFIX = -ib
VSC_DATA = /data/gent/400/vsc40023
VSC_DATA_VO = /data/gent/vo/000/gvo00002
VSC_DATA_VO_GENT = /data/gent/vo/000/gvo00002
VSC_DATA_VO_USER = /data/gent/vo/000/gvo00002/vsc40023
VSC_DATA_VO_USER_GENT = /data/gent/vo/000/gvo00002/vsc40023
VSC_DEFAULT_CLUSTER_MODULE = swalot
VSC_HOME = /user/gent/400/vsc40023
VSC_INSTITUTE = gent
VSC_INSTITUTE_CLUSTER = swalot
VSC_INSTITUTE_LOCAL = gent
VSC_OS_LOCAL = CO7
VSC_SCRATCH = /scratch/gent/400/vsc40023
VSC_SCRATCH_ARCANINE = /arcanine/scratch/gent/400/vsc40023
VSC_SCRATCH_ARCANINE_VO = /arcanine/scratch/gent/vo/000/gvo00002
VSC_SCRATCH_ARCANINE_VO_USER = /arcanine/scratch/gent/vo/000/gvo00002/vsc40023
VSC_SCRATCH_CLUSTER = /local
VSC_SCRATCH_DELCATTY = /user/scratchdelcatty/gent/400/vsc40023
VSC_SCRATCH_DELCATTY_VO = /user/scratchdelcatty/gent/vo/000/gvo00002
VSC_SCRATCH_DELCATTY_VO_USER = /user/scratchdelcatty/gent/vo/000/gvo00002/vsc40023
VSC_SCRATCH_KYUKON = /kyukon/scratch/gent/400/vsc40023
VSC_SCRATCH_KYUKON_VO = /kyukon/scratch/gent/vo/000/gvo00002
VSC_SCRATCH_KYUKON_VO_USER = /kyukon/scratch/gent/vo/000/gvo00002/vsc40023
VSC_SCRATCH_NODE = /local
VSC_SCRATCH_SITE = /scratch/gent/400/vsc40023
VSC_SCRATCH_VO = /scratch/gent/vo/000/gvo00002
VSC_SCRATCH_VO_USER = /scratch/gent/vo/000/gvo00002/vsc40023
VSC_VO = gvo00002
VSC_VO_GENT = gvo00002
XDG_RUNTIME_DIR = /run/user/2540023
XDG_SESSION_ID = c163733
_ = /usr/bin/python3
_LMFILES_ = /etc/modulefiles/vsc/cluster/swalot.lua
_ModuleTable001_ = 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
_ModuleTable002_ = L2hhc3dlbGwtaWIvbW9kdWxlcy9hbGwiLCIvZXRjL21vZHVsZWZpbGVzL3ZzYyIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzL3ZzYyIsfQ==
_ModuleTable_Sz_ = 2
__LMOD_REF_COUNT_LOADEDMODULES = cluster/swalot:1
__LMOD_REF_COUNT_MODULEPATH = /user/gent/400/vsc40023/eb_scratch/CO7/haswell-ib/modules/all:1;/etc/modulefiles/vsc:1
__LMOD_REF_COUNT_PATH = /usr/libexec/jobcli:1;/usr/local/bin:1;/usr/bin:1;/usr/local/sbin:1;/usr/sbin:1
__LMOD_REF_COUNT__LMFILES_ = /etc/modulefiles/vsc/cluster/swalot.lua:1
__LMOD_SET_FPATH = 1
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment