bicycle1885

# LICENSE: Public Domain

import requests


def panther(species, genelist, ontology='biological_process',
        correction='fdr', format='html', resource='PANTHER', timeout=15):
    """Post a over/under-representation test request to PANTHER."""

    # NOTE: The species parameter seems to be different from conventional

bicycle1885

# Install packages in system
# ==========================

# License: Public Domain

# Usage: julia setup-system.jl package1 package2 ...
# Also, don't forget to add '@system' to your LOAD_PATH like this way:
#   $ env JULIA_LOAD_PATH='@:@v#.#:@system:@stdlib' julia

using Pkg

bicycle1885

# Utilities to read output files of Alevin.
# -----------------------------------------
#
# Copyright 2020 Kenta Sato
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is

bicycle1885

#include <iostream>
#include <chrono>
#include <cmath>
#include <xbyak/xbyak.h>

const size_t INIT_CODE_BUF_SIZE = 1 >> 10;

struct Code : Xbyak::CodeGenerator
{
    Code(size_t n) : CodeGenerator(INIT_CODE_BUF_SIZE, Xbyak::AutoGrow)

bicycle1885

using LinearAlgebra: qr

function equilibrium(Q::AbstractMatrix)
    @assert size(Q, 1) == size(Q, 2)
    R = qr(Q').R
    n = size(Q, 1)
    v = zeros(eltype(Q), n)
    v[end] = 1
    for i in n-1:-1:1
        s = zero(eltype(Q))

bicycle1885

macro par(expr)
    thunk = esc(:(()->($expr)))
    quote
        local task = Task($thunk)
        task.sticky = false
        schedule(task)
        task
    end
end

bicycle1885

const a = (1, 2, 3, 4)

function func(b)
    sum = 0
    for i in 1:4
        sum += a[i] * b[i]
    end
    return sum
end

bicycle1885

import types

class SafeNaN(types.ModuleType):
    def __setattr__(self, attr, value):
        if attr == "nan":
            raise RuntimeError("cannot reassign 'nan'")
        super().__setattr__(attr, value)

import sys
import numpy

bicycle1885

module CallStack

export @callstack

using Cassette

mutable struct CallState
    depth::Int
end

bicycle1885

" General
syntax enable
set nocompatible
set noswapfile
if executable("rg")
    set grepprg=rg\ --vimgrep\ --no-heading
    set grepformat=%f:%l:%c:%m,%f:%l:%m
endif
autocmd QuickFixCmdPost * copen
nnoremap <silent> <C-n> :cn<CR>