brainstorm

{
  "title": "Pacemaker",
  "services": {
    "query": {
      "list": {
        "0": {
          "query": "verb='GET'",
          "alias": "GET",
          "color": "#7EB26D",
          "id": 0,

brainstorm

FROM ubuntu:12.04

ENV PGVERSION 9.3
ENV CK_DEFAULT_TIMEOUT 10
ENV IRODS_VAULT /usr/local/var/lib/irods/Vault
ENV TRAVIS_BUILD_DIR /tmp

RUN apt-cache search autotools
RUN apt-get update -qq
RUN apt-get install -qq odbc-postgresql unixodbc-dev build-essential libjansson-dev libjansson4 git wget autoconf

brainstorm

# -*- mode: ruby -*-
# vi: set ft=ruby :

# Vagrantfile API/syntax version. Don't touch unless you know what you're doing!
VAGRANTFILE_API_VERSION = "2"

Vagrant.configure(VAGRANTFILE_API_VERSION) do |config|
  # Every Vagrant virtual environment requires a box to build off of.
  config.vm.box_url = "https://cloud-images.ubuntu.com/vagrant/trusty/current/trusty-server-cloudimg-amd64-vagrant-disk1.box"
  config.vm.box = "base"

brainstorm

#!/bin/bash

# To use an Openstack cloud you need to authenticate against keystone, which
# returns a **Token** and **Service Catalog**.  The catalog contains the
# endpoint for all services the user/tenant has access to - including nova,
# glance, keystone, swift.
#
# *NOTE*: Using the 2.0 *auth api* does not mean that compute api is 2.0.  We
# will use the 1.1 *compute api*
export OS_AUTH_URL=https://pouta.csc.fi:5001/v2.0

brainstorm

FROM phusion/baseimage

RUN apt-get update && apt-get install -y wget picard picard-tools samtools bedtools
RUN apt-get autoclean
RUN cd /tmp && wget http://labs.oicr.on.ca/files/6993/file/SeqControl_0.0.1.tar.gz
RUN cd /tmp && tar xvzf SeqControl_*.tar.gz && mv SeqControl_*/* /usr/local/bin
RUN rm -rf /tmp/SeqControl_*

brainstorm

import os
import time
import json
import gzip
import datetime
import requests
import cPickle as pickle
from datetime import datetime

slack_token = "<SLACK_TOKEN>"

brainstorm

brainstorm

#!/bin/bash

#set -e
#set -x

# number of cycles
cycles_count=200
# first index cycle
cycle_index_start=92
# last index cycle

brainstorm

#!/usr/bin/env python

from toil.job import Job

def fn(job, i):
    job.fileStore.logToMaster("Parent says: i is %s" % i, level=100)
    return i+1

def child_worker(job, i):
    job.fileStore.logToMaster("Child says: i is %s" % i, level=100)

brainstorm

{
    "version": "0.2.0",
    "configurations": [
        {
            "name": "GDB bcftools",
            "type": "cppdbg",
            "request": "launch",
            "launchOptionType": "Local",
            "targetArchitecture": "x64",
            "program": "/Users/romanvg/dev/bcftools/bcftools",