List all stopped containers
docker ps -a -f status=exited
Delete all stopped containers
docker rm $(docker ps -aq -f status=exited)
List all stopped containers
docker ps -a -f status=exited
Delete all stopped containers
docker rm $(docker ps -aq -f status=exited)
library(SNPediaR) | |
library(tidyverse) | |
# Original function has som issues with parsing that need fixing | |
getPages2 <- function (titles, verbose = FALSE, limit = 50, wikiParseFunction = identity, | |
baseURL, format, query, ...) | |
{ | |
if (missing(baseURL)) | |
baseURL <- "https://bots.snpedia.com/api.php" | |
if (missing(format)) |
MAKER is a great tool for annotating a reference genome using empirical and ab initio gene predictions. GMOD, the umbrella organization that includes MAKER, has some nice tutorials online for running MAKER. However, these were quite simplified examples and it took a bit of effort to wrap my head completely around everything. Here I will describe a de novo genome annotation for Boa constrictor in detail, so that there is a record and that it is easy to use this as a guide to annotate any genome.
#!/usr/bin/env bash | |
get_sra() { | |
local __FASTQ="$1" | |
local __OUT="$PWD" | |
local __DOWNLOAD_THREADS=1 | |
# Allow downloading with multiple threads | |
if [[ ! -z "${DOWNLOAD_THREADS+x}" ]]; then |