system: x86_64-linux | build_time: 11 seconds | https://github.com/NixOS/nixpkgs/pull/116726

cd-hit

@nix { "action": "setPhase", "phase": "unpackPhase" }
unpacking sources
unpacking source archive /nix/store/fixy0z8ys431a376mzj7m44f9idg4m0s-source
source root is source
@nix { "action": "setPhase", "phase": "patchPhase" }
patching sources
@nix { "action": "setPhase", "phase": "configurePhase" }
configuring
no configure script, doing nothing
@nix { "action": "setPhase", "phase": "buildPhase" }
building
build flags: SHELL=/nix/store/f7jzmxq9bpbxsg69cszx56mw14n115n5-bash-4.4-p23/bin/bash PREFIX=\$\(out\)/bin
g++  -fopenmp -DWITH_ZLIB -O2  cdhit-common.c++ -c
In file included from cdhit-common.c++:28:
In member function 'void NVector<TYPE>::Resize(int, const TYPE&) [with TYPE = long int]',
    inlined from 'NVector<TYPE>::NVector(int, const TYPE&) [with TYPE = long int]' at cdhit-common.h:119:10,
    inlined from 'int local_band_align(char*, char*, int, int, ScoreMatrix&, int&, int&, int&, float&, int*, int, int, int, WorkingBuffer&)' at cdhit-common.c++:815:36:
cdhit-common.h:144:27: warning: argument 1 range [18446744056529682432, 18446744073709551608] exceeds maximum object size 9223372036854775807 [8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Walloc-size-larger-than=-Walloc-size-larger-than=8;;]
  144 |     items = (TYPE*)realloc( items, capacity*sizeof(TYPE) );
      |                    ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cdhit-common.h: In function 'int local_band_align(char*, char*, int, int, ScoreMatrix&, int&, int&, int&, float&, int*, int, int, int, WorkingBuffer&)':
cdhit-common.h:144:27: note: in a call to built-in allocation function 'void* __builtin_malloc(long unsigned int)'
g++  -fopenmp -DWITH_ZLIB -O2  cdhit-utility.c++ -c
g++  -fopenmp -DWITH_ZLIB -O2  cdhit.c++ -c
g++  -fopenmp -DWITH_ZLIB -O2  cdhit.o cdhit-common.o cdhit-utility.o -lz -o cd-hit
g++  -fopenmp -DWITH_ZLIB -O2  cdhit-est.c++ -c
g++  -fopenmp -DWITH_ZLIB -O2  cdhit-est.o cdhit-common.o cdhit-utility.o -lz -o cd-hit-est
g++  -fopenmp -DWITH_ZLIB -O2  cdhit-2d.c++ -c
g++  -fopenmp -DWITH_ZLIB -O2  cdhit-2d.o cdhit-common.o cdhit-utility.o -lz -o cd-hit-2d
g++  -fopenmp -DWITH_ZLIB -O2  cdhit-est-2d.c++ -c
g++  -fopenmp -DWITH_ZLIB -O2  cdhit-est-2d.o cdhit-common.o cdhit-utility.o -lz -o cd-hit-est-2d
g++  -fopenmp -DWITH_ZLIB -O2  cdhit-div.c++ -c
g++  -fopenmp -DWITH_ZLIB -O2  cdhit-div.o cdhit-common.o cdhit-utility.o -lz -o cd-hit-div
g++  -fopenmp -DWITH_ZLIB -O2  cdhit-454.c++ -c
g++  -fopenmp -DWITH_ZLIB -O2  cdhit-454.o cdhit-common.o cdhit-utility.o -lz -o cd-hit-454
@nix { "action": "setPhase", "phase": "installPhase" }
installing
install flags: SHELL=/nix/store/f7jzmxq9bpbxsg69cszx56mw14n115n5-bash-4.4-p23/bin/bash PREFIX=\$\(out\)/bin install
for prog in cd-hit cd-hit-est cd-hit-2d cd-hit-est-2d cd-hit-div cd-hit-454; do \
	install -m 0755 $prog /nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin; \
done
install -m 0755 *.pl /nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin;
@nix { "action": "setPhase", "phase": "fixupPhase" }
post-installation fixup
shrinking RPATHs of ELF executables and libraries in /nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1
shrinking /nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/cd-hit-454
shrinking /nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/cd-hit
shrinking /nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/cd-hit-est
shrinking /nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/cd-hit-div
shrinking /nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/cd-hit-est-2d
shrinking /nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/cd-hit-2d
strip is /nix/store/cp1sa3xxvl71cypiinw2c62i5s33chlr-binutils-2.35.1/bin/strip
stripping (with command strip and flags -S) in /nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin 
patching script interpreter paths in /nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/clstr_cut.pl: interpreter directive changed from "#!/usr/bin/perl" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/cd-hit-2d-para.pl: interpreter directive changed from "#!/usr/bin/perl -w" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl -w"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/clstr_reps_faa_rev.pl: interpreter directive changed from "#!/usr/bin/perl" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/clstr_sort_prot_by.pl: interpreter directive changed from "#!/usr/bin/perl" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/plot_len1.pl: interpreter directive changed from "#!/usr/bin/perl" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/cd-hit-div.pl: interpreter directive changed from "#!/usr/bin/perl" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/make_multi_seq.pl: interpreter directive changed from "#!/usr/bin/perl" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/clstr2xml.pl: interpreter directive changed from "#!/usr/bin/perl" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/clstr_list.pl: interpreter directive changed from "#!/usr/bin/perl" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/clstr_select.pl: interpreter directive changed from "#!/usr/bin/perl" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/clstr_sort_by.pl: interpreter directive changed from "#!/usr/bin/perl" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/cd-hit-clstr_2_blm8.pl: interpreter directive changed from "#!/usr/bin/perl" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/clstr_sql_tbl_sort.pl: interpreter directive changed from "#!/usr/bin/perl" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/clstr_rep.pl: interpreter directive changed from "#!/usr/bin/perl" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/cd-hit-para.pl: interpreter directive changed from "#!/usr/bin/perl -w" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl -w"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/clstr_size_stat.pl: interpreter directive changed from "#!/usr/bin/perl" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/clstr_merge.pl: interpreter directive changed from "#!/usr/bin/perl" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/clstr_quality_eval_by_link.pl: interpreter directive changed from "#!/usr/bin/perl" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/clstr2txt.pl: interpreter directive changed from "#!/usr/bin/perl" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/clstr_rev.pl: interpreter directive changed from "#!/usr/bin/perl" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/clstr_renumber.pl: interpreter directive changed from "#!/usr/bin/perl" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/clstr2tree.pl: interpreter directive changed from "#!/usr/bin/perl" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/clstr_size_histogram.pl: interpreter directive changed from "#!/usr/bin/perl" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/clstr_sql_tbl.pl: interpreter directive changed from "#!/usr/bin/perl" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/clstr_merge_noorder.pl: interpreter directive changed from "#!/usr/bin/perl" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/FET.pl: interpreter directive changed from "#!/usr/bin/perl" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/clstr_quality_eval.pl: interpreter directive changed from "#!/usr/bin/perl" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/clstr_select_rep.pl: interpreter directive changed from "#!/usr/bin/perl" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/clstr_list_sort.pl: interpreter directive changed from "#!/usr/bin/perl" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/clstr_reduce.pl: interpreter directive changed from "#!/usr/bin/perl" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl"
/nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1/bin/plot_2d.pl: interpreter directive changed from "#!/usr/bin/perl" to "/nix/store/192j9y62kp6a5kjw1ylgg1s4w7yxchc5-perl-5.32.1/bin/perl"
checking for references to /build/ in /nix/store/3q5x2hfz8g50dszvg3mqlkilxig1ap4h-cd-hit-4.8.1...