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Luke Canavan canavandl

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@canavandl
canavandl / demo.txt
Created December 4, 2015 02:08
('CompoundID', 'CAS', 'Alternative Name', 'LastEditDateTime')
('45161', '13466-78-9', '.DELTA.3-Carene $$ Bicyclo[4.1.0]hept-3-ene, 3,7,7-trimethyl- (CAS)', '2014-04-23T15:58:11.0710112-04:00')
('45162', '13466-78-9', '.DELTA.3-Carene $$ Bicyclo[4.1.0]hept-3-ene, 3,7,7-trimethyl- (CAS)', '2014-04-23T15:58:11.0710112-04:00')
('45163', '13466-78-9', '.DELTA.3-Carene $$ Bicyclo[4.1.0]hept-3-ene, 3,7,7-trimethyl- (CAS)', '2014-04-23T15:58:11.0710112-04:00')
('45164', '13466-78-9', '.DELTA.3-Carene $$ Bicyclo[4.1.0]hept-3-ene, 3,7,7-trimethyl- (CAS)', '2014-04-23T15:58:11.0710112-04:00')
('45165', '13466-78-9', '.DELTA.3-Carene $$ Bicyclo[4.1.0]hept-3-ene, 3,7,7-trimethyl- (CAS)', '2014-04-23T15:58:11.0710112-04:00')
('45166', '13466-78-9', '.DELTA.3-Carene $$ Bicyclo[4.1.0]hept-3-ene, 3,7,7-trimethyl- (CAS)', '2014-04-23T15:58:11.0710112-04:00')
('45167', '13466-78-9', '.DELTA.3-Carene $$ Bicyclo[4.1.0]hept-3-ene, 3,7,7-trimethyl- (CAS)', '2014-04-23T15:58:11.0710112-04:00')
@canavandl
canavandl / traceback.txt
Last active February 3, 2016 21:31
dask in ipynb traceback
Fatal Python error: GC object already tracked
Thread 0x000000010ea03000 (most recent call first):
File "/Users/lcanavan/anaconda3/envs/trialbox/lib/python3.4/site-packages/dask/diagnostics/progress.py", line 114 in _timer_func
File "/Users/lcanavan/anaconda3/envs/trialbox/lib/python3.4/threading.py", line 859 in run
File "/Users/lcanavan/anaconda3/envs/trialbox/lib/python3.4/threading.py", line 911 in _bootstrap_inner
File "/Users/lcanavan/anaconda3/envs/trialbox/lib/python3.4/threading.py", line 879 in _bootstrap
Thread 0x000000010d8df000 (most recent call first):
File "/Users/lcanavan/anaconda3/envs/trialbox/lib/python3.4/threading.py", line 290 in wait
@canavandl
canavandl / multi_label.py
Last active May 23, 2016 17:10
from bokeh.plotting import figure
from bokeh.models import Label, Plot, Range1d
from bokeh.io import output_file, show
output_file('out.html')
p = Plot(width=600, height=600,
x_range=Range1d(0,10), y_range=Range1d(0,10))
label_left1 = Label(
@canavandl
canavandl / drag_tool.py
Created June 1, 2016 19:28
from bokeh.models import Tool, Plot, Range1d, LinearAxis, Span
from bokeh.core.properties import Instance
from bokeh.io import output_file, show
DEFAULT_OVERLAY = lambda: Span(
render_mode='css',
level="overlay",
location_units="screen",
)
@canavandl
canavandl / example.py
Last active June 28, 2016 18:44
from bokeh.io import output_file, show
import joblib
from vis.bokeh_plots.cross_filter import parse_es_response, queries_plot
output_file('query.html')
pages = joblib.load('ml_index.pkl')
pages = parse_es_response(pages)
@canavandl
canavandl / banded_color_bar.coffee
Created October 11, 2016 18:41
ColorBar = require "models/annotations/color_bar"
GammaMapper = require "models/mappers/gamma_mapper"
LogMapper = require "models/mappers/log_mapper"
LinearMapper = require "models/mappers/linear_mapper"
LinearColorMapper = require "models/mappers/linear_color_mapper"
Range1d = require "models/ranges/range1d"
p = require "core/properties"
class BandedColorBarView extends ColorBar.View
bind_bokeh_events: () ->
@canavandl
canavandl / inspector_demo.py
Last active October 11, 2016 19:41
from bokeh.plotting import figure, show
from bokeh.models import CustomJS
from inspector_tool import InspectorTool
p = figure(tools='')
p.circle(x=[1,2,3], y=[1,2,3])
inspect = InspectorTool(
on_keydown=CustomJS(code="console.log('keydown event')"),
@canavandl
canavandl / inspector_demo.py
Last active October 11, 2016 20:28
from bokeh.plotting import figure, show
from bokeh.models import CustomJS
from inspector_tool import InspectorTool
p = figure(tools='')
p.circle(x=[1,2,3], y=[1,2,3])
inspect = InspectorTool(
on_keydown=CustomJS(code="console.log('keydown event')"),
@canavandl
canavandl / story.json
Created October 12, 2016 05:29
{
"title": "Country Phenotypes",
"slides": [
{
"title": "10 Basic",
"content": "<script data-bokeh-doc-id=\"\" data-bokeh-model-id=\"\" id=\"8f74dbd0-9847-497e-bc1d-c8dffe7a96f9\" src=\"data:application\/javascript;base64,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
@canavandl
canavandl / inspector_tool.coffee
Last active October 12, 2016 20:25
# Used to generate the JS implementation in inspector_tool.py
import * as _ from "underscore"
import {GestureTool, GestureToolView} from "models/tools/gestures/gesture_tool"
import * as p from "core/properties"
export class InspectorToolView extends GestureToolView
_keydown: (e) ->