Docker is a tool for bundling together applications and their dependencies into images that can than be run as containers on many different types of computers.
Docker and other containerization tools are useful to scientists because:
This is my own exploration of samtools behavior and snippets of code I use in my own analyses.
I am using the GRCh38 human reference from December, 2013.
There are two focal datasets of reads:
Some links...
Phylogenetic Biology, a book
Some notes as I learn Rust.
| # The catalytic converter theft chain | |
| Just had the second attempted theft of our catalytic converter. Here is a bit about context. | |
| ## Theft and fencing | |
| https://youtu.be/ZGLrRj7AJsc?t=172 | |
| I am not sure at what point the contraband enters the legitimate supply chain. |
Some basic notes for a couple hour discussion about data visualization.
Build on a few points from my previous course.
To read in advance of the class: https://r4ds.had.co.nz/data-visualisation.html .
| # Setting up virtualenv on macOS Yosemite | |
| brew update | |
| brew upgrade | |
| which python # check location of system version | |
| brew install python | |
| brew install freetype # Needed by some python packages | |
| brew install libxml2 # Needed by some python packages | |
| pip install virtualenv virtualenvwrapper pytest |
Short url: https://git.io/fjchB
10 May 2019
Please share this link to the ad: https://git.io/yale_postdoc_2018
Advisor: Casey Dunn
Location: Department of Ecology and Evolutionary Biology, Yale University, in New Haven, Connecticut, USA
Application due date: June 1, 2018 (or until filled)
June 25, 2017 (and updated since then)
Casey Dunn, http://dunnlab.org , @caseywdunn
These are some notes and annotated references relevant to my talk with Stacey Smith in the symposium "SSB Symposium Phylogenetic approaches to connecting genotypes to phenotypes" at Evolution 2017.
If you are interested in any of this work let me know. I am moving to Yale and looking for people to join the new research group.