cataphract

#!/bin/bash

function _grails {
    local grails_bin=/usr/bin/grails
    local grails_home
    if [[ -f application.properties ]]; then
        local grails_version=$(grep 'app\.grails\.version' application.properties \
                | cut -d = -f 2)
        local dir=$(echo ~/grails/grails-"$grails_version")
        if [[ ! -d $dir ]]; then

cataphract

package org.transmartproject.db.dataquery.clinical

import com.google.common.collect.BiMap
import com.google.common.collect.HashBiMap
import com.google.common.collect.Maps
import groovy.transform.CompileStatic
import org.hibernate.ScrollableResults
import org.transmartproject.core.dataquery.clinical.ClinicalVariableColumn
import org.transmartproject.core.exceptions.UnexpectedResultException
import org.transmartproject.db.dataquery.CollectingTabularResult

cataphract

[    4.621065] [drm] radeon: 1024M of GTT memory ready.
[    4.621074] [drm] Loading PITCAIRN Microcode
[    4.621118] [drm] radeon/PITCAIRN_mc2.bin: 31100 bytes
[    4.621131] [drm] Internal thermal controller with fan control
[    4.621160] [drm] probing gen 2 caps for device 8086:c01 = 261ad03/e
[    4.621177] == power state 0 ==
[    4.621178] 	ui class: none
[    4.621181] 	internal class: boot 
[    4.621183] 	caps: 
[    4.621185] 	uvd    vclk: 0 dclk: 0

cataphract

$ php5/bin/php-config 
Usage: php5/bin/php-config [OPTION]
Options:
  --prefix            [/home/glopes/repos/transmart-data/env/php5]
  --includes          [-I/home/glopes/repos/transmart-data/env/php5/include/php -I/home/glopes/repos/transmart-data/env/php5/include/php/main -I/home/glopes/repos/transmart-data/env/php5/include/php/TSRM -I/home/glopes/repos/transmart-data/env/php5/include/php/Zend -I/home/glopes/repos/transmart-data/env/php5/include/php/ext -I/home/glopes/repos/transmart-data/env/php5/include/php/ext/date/lib]
  --ldflags           []
  --libs              [-lcrypt   -lresolv -lcrypt -lrt -lm -ldl -lnsl  -lcrypt -lcrypt ]
  --extension-dir     [/home/glopes/repos/transmart-data/env/php5/lib/php/extensions/no-debug-non-zts-20121212]
  --include-dir       [/home/glopes/repos/transmart-data/env/php5/include/php]
  --man-dir           [/home/glopes/repos/transmart-data/env/php5/php/man]

cataphract

def run_command(command)
  Open3.popen3(*command) do |stdin, stdout, stderr, wait_thr|
    stdin.close_write
    files = [stdout, stderr]
    all_eof = lambda { files.all? { |f| f.eof } }
    print_lines = lambda { |buffer, method|
      while pos = buffer.index("\n")
        Log.send method, buffer[0..pos]
        buffer = buffer[(pos + 1)..-1]
      end

cataphract

import org.apache.commons.logging.LogFactory
@Grapes([
    @Grab(group='org.springframework.batch', module='spring-batch-core', version='3.0.1.RELEASE'),
    @Grab(group='org.springframework', module='spring-jdbc', version='4.0.5.RELEASE'),
])
import org.springframework.core.io.ClassPathResource
import org.springframework.jdbc.datasource.init.ResourceDatabasePopulator
import groovy.sql.Sql

import java.sql.Connection

cataphract

glopes ~/repos/transmart-batch (master *%<>) $ cat a.groovy 
enum A {
	FOO ('s'),
	BAR('v', a: 'v')

	A(Map map, String s) {}
}

class B {
	B(Map map, String s) {}

cataphract

glopes /tmp/aa $ wget -q http://central.maven.org/maven2/com/google/guava/guava/18.0/guava-18.0.jar
glopes /tmp/aa $ cat a.groovy 
import com.google.common.base.*
import com.google.common.collect.*
import groovy.transform.CompileStatic

@CompileStatic
class A {
	Table<String /* dimension key */,
		String /* external id */,

cataphract

2015-03-31 16:21:40,604 [main] [WARN] o.t.b.b.BetterExitMessageJobExecutionListener - Exit description: VerifyError: Bad access to protected data in invokevirtual
Exception Details:
  Location:
    org/transmartproject/batch/i2b2/dimensions/DimensionsStore$_restore_closure1_closure7.doCall(Ljava/lang/String;Ljava/util/List;)Ljava/lang/Object; @1: invokevirtual
  Reason:
    Type 'java/util/List' (current frame, stack[0]) is not assignable to 'org/transmartproject/batch/i2b2/dimensions/DimensionsStore$_restore_closure1_closure7'
  Current Frame:
    bci: @1
    flags: { }
    locals: { 'org/transmartproject/batch/i2b2/dimensions/DimensionsStore$_restore_closure1_closure7', 'java/lang/String', 'java/util/List' }

cataphract

import groovy.transform.CompileStatic

@CompileStatic
class A {
	private int position = 0
	def foo() {
		position = new Integer(0)
		assert(position != null)
	}
}