Created
December 21, 2021 13:50
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Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/coreneuron/-/pipelines/30092 (:no_entry:) running on GitHub PR BlueBrain/CoreNeuron#699.
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1640088218:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1640088218:resolve_secrets [0Ksection_start:1640088218:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor503421346, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 30092, build ref 27bd6c88db277042842987f0c6748ae9ba9e57f3, job ID 112522 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112522 | |
| A slurm job will be created with name GL_J112522_PROD_P112_CP4_C5 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 140964 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| section_end:1640088222:prepare_executor [0Ksection_start:1640088222:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i4n32 via bbpv1.epfl.ch... | |
| section_end:1640088225:prepare_script [0Ksection_start:1640088225:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1640088225:get_sources [0Ksection_start:1640088225:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for coreneuron-nvhpc-6...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=273504 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1640088254:restore_cache [0Ksection_start:1640088254:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (112516)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=275273 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=112516 responseStatus[0;m=200 OK token[0;m=RF9a3MuA | |
| section_end:1640088255:download_artifacts [0Ksection_start:1640088255:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112522/_/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112522/_/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112522/_/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112522/_/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112522/_/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m | |
| New ref for coreneuron is commit="27bd6c88db277042842987f0c6748ae9ba9e57f3" | |
| [32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m | |
| [32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m | |
| diff --git a/var/spack/repos/builtin/packages/coreneuron/package.py b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| index a4e7814..2d18848 100644 | |
| --- a/var/spack/repos/builtin/packages/coreneuron/package.py | |
| +++ b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| @@ -18,7 +18,7 @@ class Coreneuron(CMakePackage): | |
| url = "https://github.com/BlueBrain/CoreNeuron" | |
| git = "https://github.com/BlueBrain/CoreNeuron" | |
| - version('develop', branch='master') | |
| + version('develop', commit="27bd6c88db277042842987f0c6748ae9ba9e57f3") | |
| # 1.0.1 > 1.0.0.20210519 > 1.0 as far as Spack is concerned | |
| version('1.0.0.20211020', commit='e265f9d') | |
| version('1.0.0.20211012', commit='846b3a6') | |
| [32;1m$ fi[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron@develop%nvhpc+gpu+tests~legacy-unit~report build_type=RelWithDebInfo | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be d5jp63omt63hmfz46ab5b5um2wtosys4 | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112522/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112522/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Tue Dec 21 13:05:55 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.28 / 0.51 (55.58 %) | |
| Files: 6962 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'd5jp63omt63hmfz46ab5b5um2wtosys4' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron@develop%nvhpc+gpu~legacy-unit~report+tests build_type=RelWithDebInfo | |
| Concretized | |
| -------------------------------- | |
| - d5jp63o coreneuron@develop%nvhpc@21.9~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - mz42odj ^bison@3.6.4%nvhpc@21.9 patches=ad81ef1b088459a396d908295afc3809f9a25076efaa459cdd2f21eabd1f4b16 arch=linux-rhel7-x86_64 | |
| [^] jjxvkgg ^boost@1.73.0%nvhpc@21.9+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64 | |
| - lpu6i7p ^cmake@3.15.7%nvhpc@21.9~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| [^] nbtppas ^cuda@11.4.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| - nlmxfru ^flex@2.6.4%nvhpc@21.9+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] x64zuwg ^hpe-mpi@2.25.hmpt%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| - avc6rx5 ^ninja@1.10.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ni2y6im ^python@3.8.3%nvhpc@21.9+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> bison@3.6.4 : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-mz42odjxwfev23mgclgpgkustsebup72) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-jjxvkgghuqodteqzd72lafa2xfxz24dh) | |
| ==> cmake@3.15.7 : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-lpu6i7pkviopkugggid2tave7uyd6y2j) | |
| ==> cuda@11.4.2 : has external module in ['cuda/11.4.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cuda-11.4.2-amtb6x (external cuda-11.4.2-nbtppaslouhuyhs6zerdalvlcfjchwrp) | |
| ==> flex@2.6.4 : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-nlmxfrujm6vsjou3blvzzwtcyjkloybu) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.25.hmpt-l6dob7 (external hpe-mpi-2.25.hmpt-x64zuwghhre5idfwdiqzak5ynxfem2aj) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-avc6rx55mmu6uajw24ije7oqw7ge6r3w) | |
| ==> python@3.8.3 : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-ni2y6imbyi6y34r36orewroy7viqedhy) | |
| ==> Installing coreneuron-develop-d5jp63omt63hmfz46ab5b5um2wtosys4 | |
| ==> No binary for coreneuron-develop-d5jp63omt63hmfz46ab5b5um2wtosys4 found: installing from source | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.9/coreneuron-develop-d5jp63 | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112522/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112522/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Tue Dec 21 13:21:31 2021 | |
| Hits: 114 / 117 (97.44 %) | |
| Direct: 98 / 117 (83.76 %) | |
| Preprocessed: 16 / 19 (84.21 %) | |
| Misses: 3 | |
| Direct: 19 | |
| Preprocessed: 3 | |
| Uncacheable: 18 | |
| Primary storage: | |
| Hits: 227 / 234 (97.01 %) | |
| Misses: 7 | |
| Cache size (GB): 0.28 / 0.51 (55.59 %) | |
| Files: 6968 | |
| Uncacheable: | |
| Called for linking: 15 | |
| No input file: 3 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1640089300:step_script [0Ksection_start:1640089300:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache coreneuron-nvhpc-6...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=11637 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache/: found 7529 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/coreneuron-nvhpc-6[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1640089342:archive_cache [0Ksection_start:1640089342:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=12691 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=112522 responseStatus[0;m=201 Created token[0;m=hpX5gjz8 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=12730 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=112522 responseStatus[0;m=201 Created token[0;m=hpX5gjz8 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=12767 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=112522 responseStatus[0;m=201 Created token[0;m=hpX5gjz8 | |
| section_end:1640089343:upload_artifacts_on_success [0Ksection_start:1640089343:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1640089344:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1640088218:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1640088218:resolve_secrets [0Ksection_start:1640088218:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor935440021, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 30092, build ref 27bd6c88db277042842987f0c6748ae9ba9e57f3, job ID 112520 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112520 | |
| A slurm job will be created with name GL_J112520_PROD_P112_CP3_C3 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 140963 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| section_end:1640088221:prepare_executor [0Ksection_start:1640088221:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i4n32 via bbpv1.epfl.ch... | |
| section_end:1640088225:prepare_script [0Ksection_start:1640088225:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1640088225:get_sources [0Ksection_start:1640088225:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for coreneuron-intel-6...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=273487 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1640088247:restore_cache [0Ksection_start:1640088247:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (112516)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=274727 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=112516 responseStatus[0;m=200 OK token[0;m=RF9a3MuA | |
| section_end:1640088248:download_artifacts [0Ksection_start:1640088248:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112520/_/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112520/_/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112520/_/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112520/_/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112520/_/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m | |
| New ref for coreneuron is commit="27bd6c88db277042842987f0c6748ae9ba9e57f3" | |
| [32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m | |
| [32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m | |
| diff --git a/var/spack/repos/builtin/packages/coreneuron/package.py b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| index a4e7814..2d18848 100644 | |
| --- a/var/spack/repos/builtin/packages/coreneuron/package.py | |
| +++ b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| @@ -18,7 +18,7 @@ class Coreneuron(CMakePackage): | |
| url = "https://github.com/BlueBrain/CoreNeuron" | |
| git = "https://github.com/BlueBrain/CoreNeuron" | |
| - version('develop', branch='master') | |
| + version('develop', commit="27bd6c88db277042842987f0c6748ae9ba9e57f3") | |
| # 1.0.1 > 1.0.0.20210519 > 1.0 as far as Spack is concerned | |
| version('1.0.0.20211020', commit='e265f9d') | |
| version('1.0.0.20211012', commit='846b3a6') | |
| [32;1m$ fi[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron@develop%intel+tests~legacy-unit build_type=Debug | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be aevgkbdozl3htdtjhrd5w65n3c6mb2jh | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112520/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112520/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Tue Dec 21 13:05:55 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.28 / 0.51 (55.53 %) | |
| Files: 5557 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'aevgkbdozl3htdtjhrd5w65n3c6mb2jh' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron@develop%intel~legacy-unit+tests build_type=Debug | |
| Concretized | |
| -------------------------------- | |
| - aevgkbd coreneuron@develop%intel@19.1.2.254~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64 | |
| - ymcya3l ^bison@3.6.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] pvpzjkl ^boost@1.73.0%intel@19.1.2.254+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64 | |
| - mxqypex ^cmake@3.15.7%intel@19.1.2.254~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| - 5mabxtb ^flex@2.6.4%intel@19.1.2.254+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] nnhu6zi ^hpe-mpi@2.25.hmpt%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] 2gn7wjx ^libsonata-report@1.0.0.20211007%intel@19.1.2.254~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] pjaxv63 ^hdf5@1.10.7%intel@19.1.2.254+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64 | |
| [^] wjshhip ^zlib@1.2.11%intel@19.1.2.254+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] gwht6mm ^spdlog@1.8.1%intel@19.1.2.254~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - nayogh4 ^ninja@1.10.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] icfhbit ^python@3.8.3%intel@19.1.2.254+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] 7eg3tqe ^reportinglib@2.5.6%intel@19.1.2.254~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> bison@3.6.4 : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ymcya3lbfxylkvsbomj2rbzbvecsldu2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-pvpzjklfqyl55rerdxp63j32kpqkfr4z) | |
| ==> cmake@3.15.7 : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-mxqypexiy6wmh4hpnmf4lbwwwqhxzscg) | |
| ==> flex@2.6.4 : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-5mabxtbvp5xw7gfjcac32iffw27sdssk) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.25.hmpt-l6dob7 (external hpe-mpi-2.25.hmpt-nnhu6ziqp6ramcgkmky7i3e2ll5vl5ey) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-wjshhipoj5m66agnke3p2dsjf32qntuf) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-nayogh4gvnag7ybxc2ud5dt4ckxod3cc) | |
| ==> python@3.8.3 : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-icfhbitmltpoj6w6vghr23ac5erldiic) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/spdlog-1.8.1-gwht6m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/reportinglib-2.5.6-7eg3tq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/hdf5-1.10.7-pjaxv6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libsonata-report-1.0.0.20211007-2gn7wj | |
| ==> Installing coreneuron-develop-aevgkbdozl3htdtjhrd5w65n3c6mb2jh | |
| ==> No binary for coreneuron-develop-aevgkbdozl3htdtjhrd5w65n3c6mb2jh found: installing from source | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/coreneuron-develop-aevgkb | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112520/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112520/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Tue Dec 21 13:09:18 2021 | |
| Hits: 108 / 117 (92.31 %) | |
| Direct: 92 / 118 (77.97 %) | |
| Preprocessed: 16 / 26 (61.54 %) | |
| Misses: 9 | |
| Direct: 26 | |
| Preprocessed: 10 | |
| Uncacheable: 20 | |
| Primary storage: | |
| Hits: 215 / 236 (91.10 %) | |
| Misses: 21 | |
| Cache size (GB): 0.28 / 0.51 (55.55 %) | |
| Files: 5575 | |
| Uncacheable: | |
| Called for linking: 16 | |
| Compiler produced no output: 1 | |
| No input file: 3 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1640088562:step_script [0Ksection_start:1640088562:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache coreneuron-intel-6...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=285869 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache/: found 6136 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/coreneuron-intel-6[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1640088585:archive_cache [0Ksection_start:1640088585:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=287439 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=112520 responseStatus[0;m=201 Created token[0;m=jknnCyrk | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=287479 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=112520 responseStatus[0;m=201 Created token[0;m=jknnCyrk | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=287522 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=112520 responseStatus[0;m=201 Created token[0;m=jknnCyrk | |
| section_end:1640088586:upload_artifacts_on_success [0Ksection_start:1640088586:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1640088587:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1640089639:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1640089639:resolve_secrets [0Ksection_start:1640089639:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor829375667, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 30092, build ref 27bd6c88db277042842987f0c6748ae9ba9e57f3, job ID 112521 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112521 | |
| A slurm job will be created with name GL_J112521_PROD_P112_CP2_C1 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 141055 | |
| job state: R | |
| section_end:1640089640:prepare_executor [0Ksection_start:1640089640:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i4n32 via bbpv1.epfl.ch... | |
| section_end:1640089642:prepare_script [0Ksection_start:1640089642:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1640089643:get_sources [0Ksection_start:1640089643:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for coreneuron-nvhpc-6...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=22691 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1640089651:restore_cache [0Ksection_start:1640089651:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:nmodl:gpu (112518)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=23002 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=112518 responseStatus[0;m=200 OK token[0;m=CmWsdAHm | |
| section_end:1640089652:download_artifacts [0Ksection_start:1640089652:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112521/_/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112521/_/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112521/_/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112521/_/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112521/_/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m | |
| New ref for coreneuron is commit="27bd6c88db277042842987f0c6748ae9ba9e57f3" | |
| [32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m | |
| [32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m | |
| diff --git a/var/spack/repos/builtin/packages/coreneuron/package.py b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| index a4e7814..2d18848 100644 | |
| --- a/var/spack/repos/builtin/packages/coreneuron/package.py | |
| +++ b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| @@ -18,7 +18,7 @@ class Coreneuron(CMakePackage): | |
| url = "https://github.com/BlueBrain/CoreNeuron" | |
| git = "https://github.com/BlueBrain/CoreNeuron" | |
| - version('develop', branch='master') | |
| + version('develop', commit="27bd6c88db277042842987f0c6748ae9ba9e57f3") | |
| # 1.0.1 > 1.0.0.20210519 > 1.0 as far as Spack is concerned | |
| version('1.0.0.20211020', commit='e265f9d') | |
| version('1.0.0.20211012', commit='846b3a6') | |
| [32;1m$ fi[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron@develop%nvhpc+nmodl+gpu+tests~legacy-unit~report build_type=RelWithDebInfo ^/nswa6573eazhleffns23ijmh436w7top | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for nmodl@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be zlwgeoedcsxjuxmsxmqszgt6asxykrym | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112521/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112521/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Tue Dec 21 13:28:10 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.28 / 0.51 (55.59 %) | |
| Files: 6968 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'zlwgeoedcsxjuxmsxmqszgt6asxykrym' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron@develop%nvhpc+gpu~legacy-unit+nmodl~report+tests build_type=RelWithDebInfo | |
| [+] ^nmodl@develop%nvhpc@21.9~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ^py-jinja2@2.10.3%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] ^py-babel@2.7.0%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] ^py-pytz@2020.1%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] ^python@3.8.3%nvhpc@21.9+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] ^py-setuptools@50.3.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] ^py-markupsafe@1.1.1%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] ^py-pytest@5.3.4%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-attrs@20.3.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-more-itertools@8.7.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-packaging@19.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-pyparsing@2.4.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-six@1.16.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-pluggy@0.13.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-py@1.8.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-wcwidth@0.1.7%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] ^py-pyyaml@5.3.1%gcc@9.3.0+libyaml arch=linux-rhel7-x86_64 | |
| [^] ^libyaml@0.2.4%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] ^py-sympy@1.4%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] ^py-mpmath@1.1.0%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| Concretized | |
| -------------------------------- | |
| - zlwgeoe coreneuron@develop%nvhpc@21.9~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - mz42odj ^bison@3.6.4%nvhpc@21.9 patches=ad81ef1b088459a396d908295afc3809f9a25076efaa459cdd2f21eabd1f4b16 arch=linux-rhel7-x86_64 | |
| [^] jjxvkgg ^boost@1.73.0%nvhpc@21.9+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64 | |
| - lpu6i7p ^cmake@3.15.7%nvhpc@21.9~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| [^] nbtppas ^cuda@11.4.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| - nlmxfru ^flex@2.6.4%nvhpc@21.9+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] x64zuwg ^hpe-mpi@2.25.hmpt%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| - avc6rx5 ^ninja@1.10.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] nswa657 ^nmodl@develop%nvhpc@21.9~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ccuqt3m ^py-jinja2@2.10.3%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] hg7eomm ^py-babel@2.7.0%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] 5ytmph6 ^py-pytz@2020.1%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] ni2y6im ^python@3.8.3%nvhpc@21.9+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] 7bw7pw5 ^py-setuptools@50.3.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] uu54yde ^py-markupsafe@1.1.1%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] rndnnfg ^py-pytest@5.3.4%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] iugmk34 ^py-attrs@20.3.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] kfhiued ^py-more-itertools@8.7.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] 43elgth ^py-packaging@19.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] kcc57g2 ^py-pyparsing@2.4.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] qctdzu4 ^py-six@1.16.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] npfkk2d ^py-pluggy@0.13.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ybqmc22 ^py-py@1.8.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] afmj4ex ^py-wcwidth@0.1.7%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] sujyde4 ^py-pyyaml@5.3.1%gcc@9.3.0+libyaml arch=linux-rhel7-x86_64 | |
| [^] ggibzjm ^libyaml@0.2.4%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] oekgd2o ^py-sympy@1.4%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] hsn2r4n ^py-mpmath@1.1.0%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> bison@3.6.4 : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-mz42odjxwfev23mgclgpgkustsebup72) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-jjxvkgghuqodteqzd72lafa2xfxz24dh) | |
| ==> cmake@3.15.7 : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-lpu6i7pkviopkugggid2tave7uyd6y2j) | |
| ==> cuda@11.4.2 : has external module in ['cuda/11.4.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cuda-11.4.2-amtb6x (external cuda-11.4.2-nbtppaslouhuyhs6zerdalvlcfjchwrp) | |
| ==> flex@2.6.4 : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-nlmxfrujm6vsjou3blvzzwtcyjkloybu) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.25.hmpt-l6dob7 (external hpe-mpi-2.25.hmpt-x64zuwghhre5idfwdiqzak5ynxfem2aj) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-avc6rx55mmu6uajw24ije7oqw7ge6r3w) | |
| ==> python@3.8.3 : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-ni2y6imbyi6y34r36orewroy7viqedhy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/libyaml-0.2.4-ggibzj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-attrs-20.3.0-iugmk3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-setuptools-50.3.2-7bw7pw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pyparsing-2.4.2-kcc57g | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-wcwidth-0.1.7-afmj4e | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pluggy-0.13.0-npfkk2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-more-itertools-8.7.0-kfhiue | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-py-1.8.0-ybqmc2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-markupsafe-1.1.1-uu54yd | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pytz-2020.1-5ytmph | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-six-1.16.0-qctdzu | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-mpmath-1.1.0-hsn2r4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pyyaml-5.3.1-sujyde | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-babel-2.7.0-hg7eom | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-packaging-19.2-43elgt | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-sympy-1.4-oekgd2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-jinja2-2.10.3-ccuqt3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pytest-5.3.4-rndnnf | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.9/nmodl-develop-nswa65 | |
| ==> Installing coreneuron-develop-zlwgeoedcsxjuxmsxmqszgt6asxykrym | |
| ==> No binary for coreneuron-develop-zlwgeoedcsxjuxmsxmqszgt6asxykrym found: installing from source | |
| ==> Warning: Missing a source id for nmodl@develop | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.9/coreneuron-develop-zlwgeo | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112521/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112521/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Tue Dec 21 13:49:15 2021 | |
| Hits: 86 / 95 (90.53 %) | |
| Direct: 1 / 95 (1.05 %) | |
| Preprocessed: 85 / 94 (90.43 %) | |
| Misses: 9 | |
| Direct: 94 | |
| Preprocessed: 9 | |
| Uncacheable: 15 | |
| Primary storage: | |
| Hits: 87 / 190 (45.79 %) | |
| Misses: 103 | |
| Cache size (GB): 0.29 / 0.51 (55.93 %) | |
| Files: 7071 | |
| Uncacheable: | |
| Called for linking: 12 | |
| No input file: 3 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1640090959:step_script [0Ksection_start:1640090959:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache coreneuron-nvhpc-6...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=52417 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache/: found 7632 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/coreneuron-nvhpc-6[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1640090991:archive_cache [0Ksection_start:1640090991:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=54004 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=112521 responseStatus[0;m=201 Created token[0;m=NRyyu1VN | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=54053 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=112521 responseStatus[0;m=201 Created token[0;m=NRyyu1VN | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=54111 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=112521 responseStatus[0;m=201 Created token[0;m=NRyyu1VN | |
| section_end:1640090992:upload_artifacts_on_success [0Ksection_start:1640090992:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1640090993:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1640089705:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1640089705:resolve_secrets [0Ksection_start:1640089705:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor619739373, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 30092, build ref 27bd6c88db277042842987f0c6748ae9ba9e57f3, job ID 112519 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112519 | |
| A slurm job will be created with name GL_J112519_PROD_P112_CP0_C0 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 141058 | |
| job state: R | |
| section_end:1640089706:prepare_executor [0Ksection_start:1640089706:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i4n32 via bbpv1.epfl.ch... | |
| section_end:1640089709:prepare_script [0Ksection_start:1640089709:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1640089710:get_sources [0Ksection_start:1640089710:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for coreneuron-intel-6...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=27722 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1640089718:restore_cache [0Ksection_start:1640089718:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:nmodl:intel (112517)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=28065 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=112517 responseStatus[0;m=200 OK token[0;m=WxfRYkMZ | |
| section_end:1640089719:download_artifacts [0Ksection_start:1640089719:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112519/_/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112519/_/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112519/_/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112519/_/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112519/_/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m | |
| New ref for coreneuron is commit="27bd6c88db277042842987f0c6748ae9ba9e57f3" | |
| [32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m | |
| [32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m | |
| diff --git a/var/spack/repos/builtin/packages/coreneuron/package.py b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| index a4e7814..2d18848 100644 | |
| --- a/var/spack/repos/builtin/packages/coreneuron/package.py | |
| +++ b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| @@ -18,7 +18,7 @@ class Coreneuron(CMakePackage): | |
| url = "https://github.com/BlueBrain/CoreNeuron" | |
| git = "https://github.com/BlueBrain/CoreNeuron" | |
| - version('develop', branch='master') | |
| + version('develop', commit="27bd6c88db277042842987f0c6748ae9ba9e57f3") | |
| # 1.0.1 > 1.0.0.20210519 > 1.0 as far as Spack is concerned | |
| version('1.0.0.20211020', commit='e265f9d') | |
| version('1.0.0.20211012', commit='846b3a6') | |
| [32;1m$ fi[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron@develop%intel+nmodl+tests~legacy-unit build_type=Debug ^/lqyttqytclxdwwickak7uvjmb6a3au3g | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for nmodl@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be cwjs4t3f4wyl5jax3fb2obxbvjopwgn3 | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112519/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112519/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Tue Dec 21 13:31:39 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.28 / 0.51 (55.55 %) | |
| Files: 5575 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'cwjs4t3f4wyl5jax3fb2obxbvjopwgn3' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron@develop%intel~legacy-unit+nmodl+tests build_type=Debug | |
| [+] ^nmodl@develop%intel@19.1.2.254~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ^py-jinja2@2.10.3%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-babel@2.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^py-pytz@2020.1%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^python@3.8.3%intel@19.1.2.254+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] ^py-setuptools@50.3.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-markupsafe@1.1.1%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-pytest@5.3.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^py-attrs@20.3.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-more-itertools@8.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-packaging@19.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^py-pyparsing@2.4.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^py-six@1.16.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-pluggy@0.13.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-py@1.8.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-wcwidth@0.1.7%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^py-pyyaml@5.3.1%intel@19.1.2.254+libyaml arch=linux-rhel7-x86_64 | |
| [^] ^libyaml@0.2.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-sympy@1.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-mpmath@1.1.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| Concretized | |
| -------------------------------- | |
| - cwjs4t3 coreneuron@develop%intel@19.1.2.254~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64 | |
| - ymcya3l ^bison@3.6.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] pvpzjkl ^boost@1.73.0%intel@19.1.2.254+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64 | |
| - mxqypex ^cmake@3.15.7%intel@19.1.2.254~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| - 5mabxtb ^flex@2.6.4%intel@19.1.2.254+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] nnhu6zi ^hpe-mpi@2.25.hmpt%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] 2gn7wjx ^libsonata-report@1.0.0.20211007%intel@19.1.2.254~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] pjaxv63 ^hdf5@1.10.7%intel@19.1.2.254+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64 | |
| [^] wjshhip ^zlib@1.2.11%intel@19.1.2.254+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] gwht6mm ^spdlog@1.8.1%intel@19.1.2.254~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - nayogh4 ^ninja@1.10.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] lqyttqy ^nmodl@develop%intel@19.1.2.254~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ubiktsv ^py-jinja2@2.10.3%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] yrbfda2 ^py-babel@2.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] oe2c27i ^py-pytz@2020.1%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] icfhbit ^python@3.8.3%intel@19.1.2.254+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] xfgkmkd ^py-setuptools@50.3.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] oe2hrft ^py-markupsafe@1.1.1%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] jo63uk3 ^py-pytest@5.3.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] kcyedyh ^py-attrs@20.3.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] mikhjgq ^py-more-itertools@8.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] hziuwhj ^py-packaging@19.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] vpsqgcg ^py-pyparsing@2.4.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] xgnwei3 ^py-six@1.16.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] gc3zsis ^py-pluggy@0.13.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] 557icag ^py-py@1.8.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] za7jmvs ^py-wcwidth@0.1.7%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] chpzzlm ^py-pyyaml@5.3.1%intel@19.1.2.254+libyaml arch=linux-rhel7-x86_64 | |
| [^] 4237mpr ^libyaml@0.2.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] runxrmn ^py-sympy@1.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] d6t5uhn ^py-mpmath@1.1.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] 7eg3tqe ^reportinglib@2.5.6%intel@19.1.2.254~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> bison@3.6.4 : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ymcya3lbfxylkvsbomj2rbzbvecsldu2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-pvpzjklfqyl55rerdxp63j32kpqkfr4z) | |
| ==> cmake@3.15.7 : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-mxqypexiy6wmh4hpnmf4lbwwwqhxzscg) | |
| ==> flex@2.6.4 : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-5mabxtbvp5xw7gfjcac32iffw27sdssk) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.25.hmpt-l6dob7 (external hpe-mpi-2.25.hmpt-nnhu6ziqp6ramcgkmky7i3e2ll5vl5ey) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-wjshhipoj5m66agnke3p2dsjf32qntuf) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-nayogh4gvnag7ybxc2ud5dt4ckxod3cc) | |
| ==> python@3.8.3 : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-icfhbitmltpoj6w6vghr23ac5erldiic) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libyaml-0.2.4-4237mp | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/spdlog-1.8.1-gwht6m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/reportinglib-2.5.6-7eg3tq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/hdf5-1.10.7-pjaxv6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-more-itertools-8.7.0-mikhjg | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-mpmath-1.1.0-d6t5uh | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-wcwidth-0.1.7-za7jmv | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pluggy-0.13.0-gc3zsi | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-markupsafe-1.1.1-oe2hrf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pytz-2020.1-oe2c27 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-six-1.16.0-xgnwei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-setuptools-50.3.2-xfgkmk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyparsing-2.4.2-vpsqgc | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-py-1.8.0-557ica | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-attrs-20.3.0-kcyedy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyyaml-5.3.1-chpzzl | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libsonata-report-1.0.0.20211007-2gn7wj | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-sympy-1.4-runxrm | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-babel-2.7.0-yrbfda | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-packaging-19.2-hziuwh | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-jinja2-2.10.3-ubikts | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pytest-5.3.4-jo63uk | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/nmodl-develop-lqyttq | |
| ==> Installing coreneuron-develop-cwjs4t3f4wyl5jax3fb2obxbvjopwgn3 | |
| ==> No binary for coreneuron-develop-cwjs4t3f4wyl5jax3fb2obxbvjopwgn3 found: installing from source | |
| ==> Warning: Missing a source id for nmodl@develop | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/coreneuron-develop-cwjs4t | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112519/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112519/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Tue Dec 21 13:48:09 2021 | |
| Hits: 81 / 95 (85.26 %) | |
| Direct: 0 / 96 (0.00 %) | |
| Preprocessed: 81 / 96 (84.38 %) | |
| Misses: 14 | |
| Direct: 96 | |
| Preprocessed: 15 | |
| Uncacheable: 17 | |
| Primary storage: | |
| Hits: 81 / 192 (42.19 %) | |
| Misses: 111 | |
| Cache size (GB): 0.29 / 0.51 (55.95 %) | |
| Files: 5684 | |
| Uncacheable: | |
| Called for linking: 13 | |
| Compiler produced no output: 1 | |
| No input file: 3 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1640090895:step_script [0Ksection_start:1640090895:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache coreneuron-intel-6...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=51372 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache/: found 6245 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/coreneuron-intel-6[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1640090925:archive_cache [0Ksection_start:1640090925:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=51862 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=112519 responseStatus[0;m=201 Created token[0;m=1xDe_fH3 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=51892 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=112519 responseStatus[0;m=201 Created token[0;m=1xDe_fH3 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=51915 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=112519 responseStatus[0;m=201 Created token[0;m=1xDe_fH3 | |
| section_end:1640090926:upload_artifacts_on_success [0Ksection_start:1640090926:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1640090927:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1640089351:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1640089351:resolve_secrets [0Ksection_start:1640089351:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor190070155, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 30092, build ref 27bd6c88db277042842987f0c6748ae9ba9e57f3, job ID 112530 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112530 | |
| A slurm job will be created with name GL_J112530_PROD_P112_CP4_C5 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 141051 | |
| job state: R | |
| section_end:1640089353:prepare_executor [0Ksection_start:1640089353:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i4n32 via bbpv1.epfl.ch... | |
| section_end:1640089355:prepare_script [0Ksection_start:1640089355:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1640089355:get_sources [0Ksection_start:1640089355:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for neuron-nvhpc-6...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=13349 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1640089543:restore_cache [0Ksection_start:1640089543:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:gpu (112522)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=16872 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=112522 responseStatus[0;m=200 OK token[0;m=hpX5gjz8 | |
| section_end:1640089543:download_artifacts [0Ksection_start:1640089543:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES="${SPACK_PACKAGE_DEPENDENCIES}^py-cython%gcc^py-numpy%gcc"[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112530/_/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112530/_/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112530/_/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112530/_/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112530/_/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron@develop%nvhpc+coreneuron+debug+tests~legacy-unit model_tests=channel-benchmark,olfactory ^/d5jp63omt63hmfz46ab5b5um2wtosys4^py-cython%gcc^py-numpy%gcc | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for neuron@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be vkogqddlipn6wfzq2o4mkbt36t7uknzy | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112530/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112530/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Tue Dec 21 13:27:12 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.47 / 0.51 (92.65 %) | |
| Files: 32368 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'vkogqddlipn6wfzq2o4mkbt36t7uknzy' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron@develop%nvhpc+coreneuron+debug~legacy-unit+tests model_tests=channel-benchmark,olfactory | |
| [+] ^coreneuron@develop%nvhpc@21.9~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] ^boost@1.73.0%nvhpc@21.9+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] ^cuda@11.4.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^hpe-mpi@2.25.hmpt%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| - ^py-cython%gcc | |
| - ^py-numpy%gcc | |
| Concretized | |
| -------------------------------- | |
| - vkogqdd neuron@develop%nvhpc@21.9+binary+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python+rx3d+shared+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-x86_64 | |
| - mz42odj ^bison@3.6.4%nvhpc@21.9 patches=ad81ef1b088459a396d908295afc3809f9a25076efaa459cdd2f21eabd1f4b16 arch=linux-rhel7-x86_64 | |
| - lpu6i7p ^cmake@3.15.7%nvhpc@21.9~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| [+] d5jp63o ^coreneuron@develop%nvhpc@21.9~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] jjxvkgg ^boost@1.73.0%nvhpc@21.9+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] nbtppas ^cuda@11.4.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] x64zuwg ^hpe-mpi@2.25.hmpt%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| - nlmxfru ^flex@2.6.4%nvhpc@21.9+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] nrapte7 ^gettext@0.21%nvhpc@21.9+bzip2+curses+git~libunistring+libxml2+tar+xz patches=6e530daaae14725d578d6cafbf7d523accc9ed29fd817bd421cf98a5f51e9e1b,bbe9f0539aa504966ac104224d25a9260faa1015ed3adda936467be9c7de4eae,fb27a3fb5e414bdc50ffebbbe2da986473df70a493caa4396226f51a67c55424 arch=linux-rhel7-x86_64 | |
| [^] 2ysh2tt ^bzip2@1.0.8%nvhpc@21.9+shared arch=linux-rhel7-x86_64 | |
| [^] ibezovc ^libiconv@1.16%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] tnqe7c4 ^libxml2@2.9.10%nvhpc@21.9~python patches=05ff238cf435825ef835c7ae39376b52dc83d8caf19e962f0766c841386a305a,10a88ad47f9797cf7cf2d7d07241f665a3b6d1f31fa026728c8c2ae93e1664e9 arch=linux-rhel7-x86_64 | |
| [^] zxjo677 ^pkgconf@1.7.3%nvhpc@21.9 patches=6e94c68d45d4cb8148c8c53699921d10b13784f758f0563ce64c838e0ca48ceb arch=linux-rhel7-x86_64 | |
| [^] l66doh5 ^xz@5.2.5%nvhpc@21.9~pic arch=linux-rhel7-x86_64 | |
| [^] elbqaor ^zlib@1.2.11%nvhpc@21.9+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] bgo3uwo ^ncurses@6.2%nvhpc@21.9~symlinks+termlib arch=linux-rhel7-x86_64 | |
| [^] 3rfyifb ^tar@1.28%nvhpc@21.9 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,4e8cdf69294c376c45c39d059f11769c5c996c2d84cdfb56eb69890e0aa4e991,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-x86_64 | |
| - avc6rx5 ^ninja@1.10.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] o4qjffl ^py-cython@0.29.21%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] 7bw7pw5 ^py-setuptools@50.3.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ni2y6im ^python@3.8.3%nvhpc@21.9+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] oq5gdcc ^py-mpi4py@3.0.3%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] 4krfyfj ^py-numpy@1.19.4%gcc@9.3.0+blas+lapack arch=linux-rhel7-x86_64 | |
| [^] syahjjg ^intel-mkl@2018.3.222%gcc@9.3.0~ilp64+shared threads=none arch=linux-rhel7-x86_64 | |
| [^] rndnnfg ^py-pytest@5.3.4%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] iugmk34 ^py-attrs@20.3.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] kfhiued ^py-more-itertools@8.7.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] 43elgth ^py-packaging@19.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] kcc57g2 ^py-pyparsing@2.4.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] qctdzu4 ^py-six@1.16.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] npfkk2d ^py-pluggy@0.13.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] yuqhyr2 ^py-setuptools-scm@4.1.2%nvhpc@21.9+toml arch=linux-rhel7-x86_64 | |
| [^] bk3d6wo ^py-toml@0.10.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ybqmc22 ^py-py@1.8.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] afmj4ex ^py-wcwidth@0.1.7%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] gzeyuxm ^py-pytest-cov@2.8.1%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] mplwm3p ^py-coverage@5.3%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] kfcagzk ^readline@8.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> bison@3.6.4 : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-mz42odjxwfev23mgclgpgkustsebup72) | |
| ==> cmake@3.15.7 : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-lpu6i7pkviopkugggid2tave7uyd6y2j) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-jjxvkgghuqodteqzd72lafa2xfxz24dh) | |
| ==> cuda@11.4.2 : has external module in ['cuda/11.4.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cuda-11.4.2-amtb6x (external cuda-11.4.2-nbtppaslouhuyhs6zerdalvlcfjchwrp) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.25.hmpt-l6dob7 (external hpe-mpi-2.25.hmpt-x64zuwghhre5idfwdiqzak5ynxfem2aj) | |
| ==> flex@2.6.4 : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-nlmxfrujm6vsjou3blvzzwtcyjkloybu) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bzip2-1.0.8-vatuhz (external bzip2-1.0.8-2ysh2tt3lnl2uvfsnbg7krzev3ysdear) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/libiconv-1.16-ibezov | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/pkgconf-1.7.3-zxjo67 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/xz-5.2.5-l66doh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-elbqaor47ega2nun5e64w3s4tllg35cq) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ncurses-6.2-xvsnay (external ncurses-6.2-bgo3uwovij7lsxpbsk2cgyoghc3okxkl) | |
| [+] /usr (external tar-1.28-3rfyifbrzrnqstk63f6zfnxe4vf7herg) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-avc6rx55mmu6uajw24ije7oqw7ge6r3w) | |
| ==> python@3.8.3 : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-ni2y6imbyi6y34r36orewroy7viqedhy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/intel-mkl-2018.3.222-xjuqsf (external intel-mkl-2018.3.222-syahjjgpawq4c4jicb753yciaowfyr75) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/readline-8.0-f2v4sr (external readline-8.0-kfcagzks7msvsixt2q7vdt2t33xo5rih) | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.9/coreneuron-develop-d5jp63 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/libxml2-2.9.10-tnqe7c | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-setuptools-50.3.2-7bw7pw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-six-1.16.0-qctdzu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/gettext-0.21-nrapte | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-toml-0.10.0-bk3d6w | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-mpi4py-3.0.3-oq5gdc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pyparsing-2.4.2-kcc57g | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-attrs-20.3.0-iugmk3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-wcwidth-0.1.7-afmj4e | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-more-itertools-8.7.0-kfhiue | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/py-cython-0.29.21-o4qjff | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-coverage-5.3-mplwm3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-setuptools-scm-4.1.2-yuqhyr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-packaging-19.2-43elgt | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/py-numpy-1.19.4-4krfyf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-py-1.8.0-ybqmc2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pluggy-0.13.0-npfkk2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pytest-5.3.4-rndnnf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pytest-cov-2.8.1-gzeyux | |
| ==> Installing neuron-develop-vkogqddlipn6wfzq2o4mkbt36t7uknzy | |
| ==> No binary for neuron-develop-vkogqddlipn6wfzq2o4mkbt36t7uknzy found: installing from source | |
| ==> Warning: Missing a source id for neuron@develop | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:57990]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:58070]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:58092]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:58094]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:58166]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:58232]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:58258]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:58274]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:58288]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:58332]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:60562]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:60650]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:60722]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:60732]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:60850]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:60894]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:32890]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:33180]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:33402]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:33406]: Insane message length | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_unpack: unpack error | |
| srun: error: Invalid IO init header version | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:33592]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:35176]: Insane message length | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:35382]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:33842]: Insane message length | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| ==> neuron: Executing phase: 'install' | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.9/neuron-develop-vkogqd | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:35776]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:35778]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:34290]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:34292]: Connection reset by peer | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112530/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112530/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Tue Dec 21 14:06:56 2021 | |
| Hits: 517 / 902 (57.32 %) | |
| Direct: 17 / 911 (1.87 %) | |
| Preprocessed: 500 / 888 (56.31 %) | |
| Misses: 385 | |
| Direct: 894 | |
| Preprocessed: 388 | |
| Uncacheable: 135 | |
| Primary storage: | |
| Hits: 570 / 1816 (31.39 %) | |
| Misses: 1246 | |
| Cache size (GB): 0.45 / 0.51 (88.53 %) | |
| Files: 30738 | |
| Cleanups: 10 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 112 | |
| Called for preprocessing: 1 | |
| Compilation failed: 3 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1640092021:step_script [0Ksection_start:1640092021:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache neuron-nvhpc-6...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=108464 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache/: found 31299 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/neuron-nvhpc-6[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1640092095:archive_cache [0Ksection_start:1640092095:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=110538 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=112530 responseStatus[0;m=201 Created token[0;m=xdQWnAYo | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=110596 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=112530 responseStatus[0;m=201 Created token[0;m=xdQWnAYo | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=110623 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=112530 responseStatus[0;m=201 Created token[0;m=xdQWnAYo | |
| section_end:1640092097:upload_artifacts_on_success [0Ksection_start:1640092097:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1640092098:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1640088592:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1640088592:resolve_secrets [0Ksection_start:1640088592:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor983971018, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 30092, build ref 27bd6c88db277042842987f0c6748ae9ba9e57f3, job ID 112528 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112528 | |
| A slurm job will be created with name GL_J112528_PROD_P112_CP6_C6 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 140973 | |
| job state: R | |
| section_end:1640088594:prepare_executor [0Ksection_start:1640088594:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i4n32 via bbpv1.epfl.ch... | |
| section_end:1640088598:prepare_script [0Ksection_start:1640088598:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1640088598:get_sources [0Ksection_start:1640088598:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for neuron-intel-6...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=289180 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading cache.zip from https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/neuron-intel-6[0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1640088995:restore_cache [0Ksection_start:1640088995:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:intel (112520)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=2570 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=112520 responseStatus[0;m=200 OK token[0;m=jknnCyrk | |
| section_end:1640088996:download_artifacts [0Ksection_start:1640088996:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112528/_/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112528/_/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112528/_/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112528/_/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112528/_/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron@develop%intel+coreneuron+debug+tests~legacy-unit model_tests=channel-benchmark,olfactory ^/aevgkbdozl3htdtjhrd5w65n3c6mb2jh | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for neuron@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be mvn7s3za436y6xrhbspwpy7pbewubnvm | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112528/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112528/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Tue Dec 21 13:22:09 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.47 / 0.51 (91.04 %) | |
| Files: 24771 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'mvn7s3za436y6xrhbspwpy7pbewubnvm' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron@develop%intel+coreneuron+debug~legacy-unit+tests model_tests=channel-benchmark,olfactory | |
| [+] ^coreneuron@develop%intel@19.1.2.254~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64 | |
| [^] ^boost@1.73.0%intel@19.1.2.254+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] ^hpe-mpi@2.25.hmpt%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^libsonata-report@1.0.0.20211007%intel@19.1.2.254~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] ^hdf5@1.10.7%intel@19.1.2.254+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64 | |
| [^] ^zlib@1.2.11%intel@19.1.2.254+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] ^spdlog@1.8.1%intel@19.1.2.254~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] ^reportinglib@2.5.6%intel@19.1.2.254~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| Concretized | |
| -------------------------------- | |
| - mvn7s3z neuron@develop%intel@19.1.2.254+binary+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python+rx3d+shared+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-x86_64 | |
| - ymcya3l ^bison@3.6.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - mxqypex ^cmake@3.15.7%intel@19.1.2.254~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| [+] aevgkbd ^coreneuron@develop%intel@19.1.2.254~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64 | |
| [^] pvpzjkl ^boost@1.73.0%intel@19.1.2.254+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] nnhu6zi ^hpe-mpi@2.25.hmpt%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] 2gn7wjx ^libsonata-report@1.0.0.20211007%intel@19.1.2.254~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] pjaxv63 ^hdf5@1.10.7%intel@19.1.2.254+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64 | |
| [^] wjshhip ^zlib@1.2.11%intel@19.1.2.254+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] gwht6mm ^spdlog@1.8.1%intel@19.1.2.254~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] 7eg3tqe ^reportinglib@2.5.6%intel@19.1.2.254~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - 5mabxtb ^flex@2.6.4%intel@19.1.2.254+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] 6vrzcuv ^gettext@0.21%intel@19.1.2.254+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-x86_64 | |
| [^] 6zbb66a ^bzip2@1.0.8%intel@19.1.2.254+shared arch=linux-rhel7-x86_64 | |
| [^] qlmq4dv ^libiconv@1.16%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] 6lr2umn ^libxml2@2.9.10%intel@19.1.2.254~python arch=linux-rhel7-x86_64 | |
| [^] 2qyzkdl ^pkgconf@1.7.3%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] wzx3yy4 ^xz@5.2.5%intel@19.1.2.254~pic arch=linux-rhel7-x86_64 | |
| [^] nedfnju ^ncurses@6.2%intel@19.1.2.254~symlinks+termlib arch=linux-rhel7-x86_64 | |
| [^] d4pg4b2 ^tar@1.28%intel@19.1.2.254 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-x86_64 | |
| - nayogh4 ^ninja@1.10.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] i3t5fut ^py-cython@0.29.21%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] xfgkmkd ^py-setuptools@50.3.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] icfhbit ^python@3.8.3%intel@19.1.2.254+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] mr7m2z7 ^py-mpi4py@3.0.3%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] l643i7a ^py-numpy@1.19.4%intel@19.1.2.254+blas+lapack arch=linux-rhel7-x86_64 | |
| [^] nnxc4wm ^intel-mkl@2018.3.222%intel@19.1.2.254~ilp64+shared threads=none arch=linux-rhel7-x86_64 | |
| [+] jo63uk3 ^py-pytest@5.3.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] kcyedyh ^py-attrs@20.3.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] mikhjgq ^py-more-itertools@8.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] hziuwhj ^py-packaging@19.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] vpsqgcg ^py-pyparsing@2.4.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] xgnwei3 ^py-six@1.16.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] gc3zsis ^py-pluggy@0.13.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ze65gmo ^py-setuptools-scm@4.1.2%intel@19.1.2.254+toml arch=linux-rhel7-x86_64 | |
| [^] p553wsa ^py-toml@0.10.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] 557icag ^py-py@1.8.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] za7jmvs ^py-wcwidth@0.1.7%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - zniig3b ^py-pytest-cov@2.8.1%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - 2v5wfwa ^py-coverage@5.3%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] kej56sd ^readline@8.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> bison@3.6.4 : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ymcya3lbfxylkvsbomj2rbzbvecsldu2) | |
| ==> cmake@3.15.7 : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-mxqypexiy6wmh4hpnmf4lbwwwqhxzscg) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-pvpzjklfqyl55rerdxp63j32kpqkfr4z) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.25.hmpt-l6dob7 (external hpe-mpi-2.25.hmpt-nnhu6ziqp6ramcgkmky7i3e2ll5vl5ey) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-wjshhipoj5m66agnke3p2dsjf32qntuf) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/spdlog-1.8.1-gwht6m | |
| ==> flex@2.6.4 : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-5mabxtbvp5xw7gfjcac32iffw27sdssk) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bzip2-1.0.8-vatuhz (external bzip2-1.0.8-6zbb66a3uunskwyljh6sbgo36hbo7lj4) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libiconv-1.16-qlmq4d | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/pkgconf-1.7.3-2qyzkd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/xz-5.2.5-wzx3yy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ncurses-6.2-xvsnay (external ncurses-6.2-nedfnju3ptngli3lpj3occtiuoe2x6e3) | |
| [+] /usr (external tar-1.28-d4pg4b2ncvxd3p2ptw3j4os6jb5a7yvy) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-nayogh4gvnag7ybxc2ud5dt4ckxod3cc) | |
| ==> python@3.8.3 : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-icfhbitmltpoj6w6vghr23ac5erldiic) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/intel-mkl-2018.3.222-xjuqsf (external intel-mkl-2018.3.222-nnxc4wmon4s26gfyily3n6tqa43p36rj) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/readline-8.0-f2v4sr (external readline-8.0-kej56sdf2cwo7ximwd5foo34wzwveqxc) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/reportinglib-2.5.6-7eg3tq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/hdf5-1.10.7-pjaxv6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libxml2-2.9.10-6lr2um | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-six-1.16.0-xgnwei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-setuptools-50.3.2-xfgkmk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libsonata-report-1.0.0.20211007-2gn7wj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/gettext-0.21-6vrzcu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-toml-0.10.0-p553ws | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-cython-0.29.21-i3t5fu | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-more-itertools-8.7.0-mikhjg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyparsing-2.4.2-vpsqgc | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-wcwidth-0.1.7-za7jmv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-mpi4py-3.0.3-mr7m2z | |
| ==> Installing py-coverage-5.3-2v5wfwapuwn63xqjymkn5jpew7mdm6uk | |
| ==> No binary for py-coverage-5.3-2v5wfwapuwn63xqjymkn5jpew7mdm6uk found: installing from source | |
| ==> Warning: Missing a source id for neuron@develop | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/28/280baa8ec489c4f542f8940f9c4c2181f0306a8ee1a54eceba071a449fb870a0.tar.gz | |
| ==> py-coverage: Executing phase: 'build' | |
| ==> py-coverage: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-coverage-5.3-2v5wfw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-attrs-20.3.0-kcyedy | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/coreneuron-develop-aevgkb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-setuptools-scm-4.1.2-ze65gm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-numpy-1.19.4-l643i7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-packaging-19.2-hziuwh | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pluggy-0.13.0-gc3zsi | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-py-1.8.0-557ica | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pytest-5.3.4-jo63uk | |
| ==> Installing py-pytest-cov-2.8.1-zniig3b6klz2ibslrfa3digiozwp46fe | |
| ==> No binary for py-pytest-cov-2.8.1-zniig3b6klz2ibslrfa3digiozwp46fe found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/cc/cc6742d8bac45070217169f5f72ceee1e0e55b0221f54bcf24845972d3a47f2b.tar.gz | |
| ==> py-pytest-cov: Executing phase: 'build' | |
| ==> py-pytest-cov: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pytest-cov-2.8.1-zniig3 | |
| ==> Installing neuron-develop-mvn7s3za436y6xrhbspwpy7pbewubnvm | |
| ==> No binary for neuron-develop-mvn7s3za436y6xrhbspwpy7pbewubnvm found: installing from source | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:59178]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:59398]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:59498]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:59500]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:59558]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:59644]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:59792]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:60004]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:60058]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:60062]: Insane message length | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_unpack: unpack error | |
| srun: error: Invalid IO init header version | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:32854]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:32928]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:32942]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:32944]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:32966]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:32982]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:32996]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:33000]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:33016]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:33048]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:35726]: Insane message length | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:33260]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:35904]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:33332]: Insane message length | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:36050]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:36054]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:36090]: Connection reset by peer | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:36102]: Connection reset by peer | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:33630]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:33632]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:33746]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:33754]: Connection reset by peer | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:36378]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:36510]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:36572]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:36586]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:36598]: Insane message length | |
| ==> neuron: Executing phase: 'install' | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:34094]: Connection reset by peer | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/neuron-develop-mvn7s3 | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112528/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112528/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Tue Dec 21 14:08:10 2021 | |
| Hits: 455 / 906 (50.22 %) | |
| Direct: 17 / 915 (1.86 %) | |
| Preprocessed: 438 / 892 (49.10 %) | |
| Misses: 451 | |
| Direct: 898 | |
| Preprocessed: 454 | |
| Uncacheable: 145 | |
| Primary storage: | |
| Hits: 508 / 1824 (27.85 %) | |
| Misses: 1316 | |
| Cache size (GB): 0.43 / 0.51 (83.92 %) | |
| Files: 23010 | |
| Cleanups: 13 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 122 | |
| Called for preprocessing: 1 | |
| Compilation failed: 3 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1640092151:step_script [0Ksection_start:1640092151:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache neuron-intel-6...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=112019 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache/: found 23571 matching files and directories[0;m | |
| Session terminated, killing shell... ...killed. | |
| srun: Job step aborted: Waiting up to 32 seconds for job step to finish. | |
| slurmstepd: error: *** STEP 140973.5 ON r1i4n32 CANCELLED AT 2021-12-21T14:10:05 DUE TO TIME LIMIT *** | |
| srun: error: r1i4n32: task 0: Terminated | |
| section_end:1640092206:archive_cache [0K[31;1mERROR: Job failed: execution took longer than 1h0m0s seconds | |
| [0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1640090999:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1640090999:resolve_secrets [0Ksection_start:1640090999:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor800379838, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 30092, build ref 27bd6c88db277042842987f0c6748ae9ba9e57f3, job ID 112529 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112529 | |
| A slurm job will be created with name GL_J112529_PROD_P112_CP10_C11 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 141073 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| section_end:1640091002:prepare_executor [0Ksection_start:1640091002:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i5n23 via bbpv1.epfl.ch... | |
| section_end:1640091004:prepare_script [0Ksection_start:1640091004:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1640091005:get_sources [0Ksection_start:1640091005:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for neuron-nvhpc-6...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=257446 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1640091160:restore_cache [0Ksection_start:1640091160:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron+nmodl:gpu (112521)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=263850 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=112521 responseStatus[0;m=200 OK token[0;m=NRyyu1VN | |
| section_end:1640091161:download_artifacts [0Ksection_start:1640091161:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES="${SPACK_PACKAGE_DEPENDENCIES}^py-cython%gcc^py-numpy%gcc"[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112529/_/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112529/_/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112529/_/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112529/_/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112529/_/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron@develop%nvhpc+coreneuron+debug+tests~legacy-unit model_tests=channel-benchmark,olfactory ^/zlwgeoedcsxjuxmsxmqszgt6asxykrym^py-cython%gcc^py-numpy%gcc | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for neuron@develop | |
| ==> Warning: Missing a source id for nmodl@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be kxhxq4seozqasdxdnbgni3g566ai7oyd | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112529/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112529/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Tue Dec 21 13:53:41 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.47 / 0.51 (92.65 %) | |
| Files: 32368 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'kxhxq4seozqasdxdnbgni3g566ai7oyd' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron@develop%nvhpc+coreneuron+debug~legacy-unit+tests model_tests=channel-benchmark,olfactory | |
| [+] ^coreneuron@develop%nvhpc@21.9~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] ^boost@1.73.0%nvhpc@21.9+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] ^cuda@11.4.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^hpe-mpi@2.25.hmpt%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] ^nmodl@develop%nvhpc@21.9~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ^py-jinja2@2.10.3%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] ^py-babel@2.7.0%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] ^py-pytz@2020.1%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] ^python@3.8.3%nvhpc@21.9+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] ^py-setuptools@50.3.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] ^py-markupsafe@1.1.1%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] ^py-pytest@5.3.4%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-attrs@20.3.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-more-itertools@8.7.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-packaging@19.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-pyparsing@2.4.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-six@1.16.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-pluggy@0.13.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-py@1.8.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-wcwidth@0.1.7%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] ^py-pyyaml@5.3.1%gcc@9.3.0+libyaml arch=linux-rhel7-x86_64 | |
| [^] ^libyaml@0.2.4%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] ^py-sympy@1.4%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] ^py-mpmath@1.1.0%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| - ^py-cython%gcc | |
| - ^py-numpy%gcc | |
| Concretized | |
| -------------------------------- | |
| - kxhxq4s neuron@develop%nvhpc@21.9+binary+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python+rx3d+shared+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-x86_64 | |
| - mz42odj ^bison@3.6.4%nvhpc@21.9 patches=ad81ef1b088459a396d908295afc3809f9a25076efaa459cdd2f21eabd1f4b16 arch=linux-rhel7-x86_64 | |
| - lpu6i7p ^cmake@3.15.7%nvhpc@21.9~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| [+] zlwgeoe ^coreneuron@develop%nvhpc@21.9~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] jjxvkgg ^boost@1.73.0%nvhpc@21.9+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] nbtppas ^cuda@11.4.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] x64zuwg ^hpe-mpi@2.25.hmpt%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] nswa657 ^nmodl@develop%nvhpc@21.9~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ccuqt3m ^py-jinja2@2.10.3%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] hg7eomm ^py-babel@2.7.0%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] 5ytmph6 ^py-pytz@2020.1%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] ni2y6im ^python@3.8.3%nvhpc@21.9+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] 7bw7pw5 ^py-setuptools@50.3.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] uu54yde ^py-markupsafe@1.1.1%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] rndnnfg ^py-pytest@5.3.4%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] iugmk34 ^py-attrs@20.3.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] kfhiued ^py-more-itertools@8.7.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] 43elgth ^py-packaging@19.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] kcc57g2 ^py-pyparsing@2.4.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] qctdzu4 ^py-six@1.16.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] npfkk2d ^py-pluggy@0.13.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ybqmc22 ^py-py@1.8.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] afmj4ex ^py-wcwidth@0.1.7%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] sujyde4 ^py-pyyaml@5.3.1%gcc@9.3.0+libyaml arch=linux-rhel7-x86_64 | |
| [^] ggibzjm ^libyaml@0.2.4%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] oekgd2o ^py-sympy@1.4%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] hsn2r4n ^py-mpmath@1.1.0%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| - nlmxfru ^flex@2.6.4%nvhpc@21.9+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] nrapte7 ^gettext@0.21%nvhpc@21.9+bzip2+curses+git~libunistring+libxml2+tar+xz patches=6e530daaae14725d578d6cafbf7d523accc9ed29fd817bd421cf98a5f51e9e1b,bbe9f0539aa504966ac104224d25a9260faa1015ed3adda936467be9c7de4eae,fb27a3fb5e414bdc50ffebbbe2da986473df70a493caa4396226f51a67c55424 arch=linux-rhel7-x86_64 | |
| [^] 2ysh2tt ^bzip2@1.0.8%nvhpc@21.9+shared arch=linux-rhel7-x86_64 | |
| [^] ibezovc ^libiconv@1.16%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] tnqe7c4 ^libxml2@2.9.10%nvhpc@21.9~python patches=05ff238cf435825ef835c7ae39376b52dc83d8caf19e962f0766c841386a305a,10a88ad47f9797cf7cf2d7d07241f665a3b6d1f31fa026728c8c2ae93e1664e9 arch=linux-rhel7-x86_64 | |
| [^] zxjo677 ^pkgconf@1.7.3%nvhpc@21.9 patches=6e94c68d45d4cb8148c8c53699921d10b13784f758f0563ce64c838e0ca48ceb arch=linux-rhel7-x86_64 | |
| [^] l66doh5 ^xz@5.2.5%nvhpc@21.9~pic arch=linux-rhel7-x86_64 | |
| [^] elbqaor ^zlib@1.2.11%nvhpc@21.9+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] bgo3uwo ^ncurses@6.2%nvhpc@21.9~symlinks+termlib arch=linux-rhel7-x86_64 | |
| [^] 3rfyifb ^tar@1.28%nvhpc@21.9 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,4e8cdf69294c376c45c39d059f11769c5c996c2d84cdfb56eb69890e0aa4e991,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-x86_64 | |
| - avc6rx5 ^ninja@1.10.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] o4qjffl ^py-cython@0.29.21%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] oq5gdcc ^py-mpi4py@3.0.3%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] 4krfyfj ^py-numpy@1.19.4%gcc@9.3.0+blas+lapack arch=linux-rhel7-x86_64 | |
| [^] syahjjg ^intel-mkl@2018.3.222%gcc@9.3.0~ilp64+shared threads=none arch=linux-rhel7-x86_64 | |
| [^] gzeyuxm ^py-pytest-cov@2.8.1%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] mplwm3p ^py-coverage@5.3%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] kfcagzk ^readline@8.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> bison@3.6.4 : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-mz42odjxwfev23mgclgpgkustsebup72) | |
| ==> cmake@3.15.7 : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-lpu6i7pkviopkugggid2tave7uyd6y2j) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-jjxvkgghuqodteqzd72lafa2xfxz24dh) | |
| ==> cuda@11.4.2 : has external module in ['cuda/11.4.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cuda-11.4.2-amtb6x (external cuda-11.4.2-nbtppaslouhuyhs6zerdalvlcfjchwrp) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.25.hmpt-l6dob7 (external hpe-mpi-2.25.hmpt-x64zuwghhre5idfwdiqzak5ynxfem2aj) | |
| ==> python@3.8.3 : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-ni2y6imbyi6y34r36orewroy7viqedhy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/libyaml-0.2.4-ggibzj | |
| ==> flex@2.6.4 : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-nlmxfrujm6vsjou3blvzzwtcyjkloybu) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bzip2-1.0.8-vatuhz (external bzip2-1.0.8-2ysh2tt3lnl2uvfsnbg7krzev3ysdear) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/libiconv-1.16-ibezov | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/pkgconf-1.7.3-zxjo67 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/xz-5.2.5-l66doh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-elbqaor47ega2nun5e64w3s4tllg35cq) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ncurses-6.2-xvsnay (external ncurses-6.2-bgo3uwovij7lsxpbsk2cgyoghc3okxkl) | |
| [+] /usr (external tar-1.28-3rfyifbrzrnqstk63f6zfnxe4vf7herg) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/intel-mkl-2018.3.222-xjuqsf (external intel-mkl-2018.3.222-syahjjgpawq4c4jicb753yciaowfyr75) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/readline-8.0-f2v4sr (external readline-8.0-kfcagzks7msvsixt2q7vdt2t33xo5rih) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-py-1.8.0-ybqmc2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pluggy-0.13.0-npfkk2 | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-avc6rx55mmu6uajw24ije7oqw7ge6r3w) | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-markupsafe-1.1.1-uu54yd | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pytz-2020.1-5ytmph | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-attrs-20.3.0-iugmk3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-mpmath-1.1.0-hsn2r4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-more-itertools-8.7.0-kfhiue | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-six-1.16.0-qctdzu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pyparsing-2.4.2-kcc57g | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-wcwidth-0.1.7-afmj4e | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-setuptools-50.3.2-7bw7pw | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pyyaml-5.3.1-sujyde | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/libxml2-2.9.10-tnqe7c | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-sympy-1.4-oekgd2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-packaging-19.2-43elgt | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-mpi4py-3.0.3-oq5gdc | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-babel-2.7.0-hg7eom | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/py-cython-0.29.21-o4qjff | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-coverage-5.3-mplwm3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/gettext-0.21-nrapte | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pytest-5.3.4-rndnnf | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-jinja2-2.10.3-ccuqt3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/py-numpy-1.19.4-4krfyf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pytest-cov-2.8.1-gzeyux | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.9/nmodl-develop-nswa65 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.9/coreneuron-develop-zlwgeo | |
| ==> Installing neuron-develop-kxhxq4seozqasdxdnbgni3g566ai7oyd | |
| ==> No binary for neuron-develop-kxhxq4seozqasdxdnbgni3g566ai7oyd found: installing from source | |
| ==> Warning: Missing a source id for nmodl@develop | |
| ==> Warning: Missing a source id for neuron@develop | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| Session terminated, killing shell... ...killed. | |
| srun: Job step aborted: Waiting up to 32 seconds for job step to finish. | |
| slurmstepd: error: *** STEP 141073.4 ON r1i5n23 CANCELLED AT 2021-12-21T14:50:05 DUE TO TIME LIMIT *** | |
| srun: error: r1i5n23: task 0: Terminated | |
| section_end:1640094605:step_script [0K[31;1mERROR: Job failed: execution took longer than 1h0m0s seconds | |
| [0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1640090936:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1640090936:resolve_secrets [0Ksection_start:1640090936:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor492244462, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 30092, build ref 27bd6c88db277042842987f0c6748ae9ba9e57f3, job ID 112527 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112527 | |
| A slurm job will be created with name GL_J112527_PROD_P112_CP9_C10 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 141071 | |
| job state: R | |
| section_end:1640090937:prepare_executor [0Ksection_start:1640090937:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i5n23 via bbpv1.epfl.ch... | |
| section_end:1640090940:prepare_script [0Ksection_start:1640090940:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1640090941:get_sources [0Ksection_start:1640090941:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for neuron-intel-6...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=253494 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1640090969:restore_cache [0Ksection_start:1640090969:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron+nmodl:intel (112519)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=254950 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=112519 responseStatus[0;m=200 OK token[0;m=1xDe_fH3 | |
| section_end:1640090969:download_artifacts [0Ksection_start:1640090969:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112527/_/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112527/_/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112527/_/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112527/_/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112527/_/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron@develop%intel+coreneuron+debug+tests~legacy-unit model_tests=channel-benchmark,olfactory ^/cwjs4t3f4wyl5jax3fb2obxbvjopwgn3 | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for neuron@develop | |
| ==> Warning: Missing a source id for nmodl@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be jhigcl7ephcbe47kbyz2znl76v2kaeev | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112527/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112527/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Tue Dec 21 13:50:28 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.42 / 0.51 (82.35 %) | |
| Files: 22870 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'jhigcl7ephcbe47kbyz2znl76v2kaeev' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron@develop%intel+coreneuron+debug~legacy-unit+tests model_tests=channel-benchmark,olfactory | |
| [+] ^coreneuron@develop%intel@19.1.2.254~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64 | |
| [^] ^boost@1.73.0%intel@19.1.2.254+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] ^hpe-mpi@2.25.hmpt%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^libsonata-report@1.0.0.20211007%intel@19.1.2.254~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] ^hdf5@1.10.7%intel@19.1.2.254+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64 | |
| [^] ^zlib@1.2.11%intel@19.1.2.254+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] ^spdlog@1.8.1%intel@19.1.2.254~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ^nmodl@develop%intel@19.1.2.254~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ^py-jinja2@2.10.3%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-babel@2.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^py-pytz@2020.1%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^python@3.8.3%intel@19.1.2.254+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] ^py-setuptools@50.3.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-markupsafe@1.1.1%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-pytest@5.3.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^py-attrs@20.3.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-more-itertools@8.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-packaging@19.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^py-pyparsing@2.4.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^py-six@1.16.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-pluggy@0.13.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-py@1.8.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-wcwidth@0.1.7%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^py-pyyaml@5.3.1%intel@19.1.2.254+libyaml arch=linux-rhel7-x86_64 | |
| [^] ^libyaml@0.2.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-sympy@1.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-mpmath@1.1.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^reportinglib@2.5.6%intel@19.1.2.254~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| Concretized | |
| -------------------------------- | |
| - jhigcl7 neuron@develop%intel@19.1.2.254+binary+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python+rx3d+shared+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-x86_64 | |
| - ymcya3l ^bison@3.6.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - mxqypex ^cmake@3.15.7%intel@19.1.2.254~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| [+] cwjs4t3 ^coreneuron@develop%intel@19.1.2.254~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64 | |
| [^] pvpzjkl ^boost@1.73.0%intel@19.1.2.254+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] nnhu6zi ^hpe-mpi@2.25.hmpt%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] 2gn7wjx ^libsonata-report@1.0.0.20211007%intel@19.1.2.254~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] pjaxv63 ^hdf5@1.10.7%intel@19.1.2.254+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64 | |
| [^] wjshhip ^zlib@1.2.11%intel@19.1.2.254+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] gwht6mm ^spdlog@1.8.1%intel@19.1.2.254~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] lqyttqy ^nmodl@develop%intel@19.1.2.254~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ubiktsv ^py-jinja2@2.10.3%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] yrbfda2 ^py-babel@2.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] oe2c27i ^py-pytz@2020.1%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] icfhbit ^python@3.8.3%intel@19.1.2.254+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] xfgkmkd ^py-setuptools@50.3.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] oe2hrft ^py-markupsafe@1.1.1%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] jo63uk3 ^py-pytest@5.3.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] kcyedyh ^py-attrs@20.3.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] mikhjgq ^py-more-itertools@8.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] hziuwhj ^py-packaging@19.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] vpsqgcg ^py-pyparsing@2.4.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] xgnwei3 ^py-six@1.16.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] gc3zsis ^py-pluggy@0.13.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] 557icag ^py-py@1.8.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] za7jmvs ^py-wcwidth@0.1.7%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] chpzzlm ^py-pyyaml@5.3.1%intel@19.1.2.254+libyaml arch=linux-rhel7-x86_64 | |
| [^] 4237mpr ^libyaml@0.2.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] runxrmn ^py-sympy@1.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] d6t5uhn ^py-mpmath@1.1.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] 7eg3tqe ^reportinglib@2.5.6%intel@19.1.2.254~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - 5mabxtb ^flex@2.6.4%intel@19.1.2.254+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] 6vrzcuv ^gettext@0.21%intel@19.1.2.254+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-x86_64 | |
| [^] 6zbb66a ^bzip2@1.0.8%intel@19.1.2.254+shared arch=linux-rhel7-x86_64 | |
| [^] qlmq4dv ^libiconv@1.16%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] 6lr2umn ^libxml2@2.9.10%intel@19.1.2.254~python arch=linux-rhel7-x86_64 | |
| [^] 2qyzkdl ^pkgconf@1.7.3%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] wzx3yy4 ^xz@5.2.5%intel@19.1.2.254~pic arch=linux-rhel7-x86_64 | |
| [^] nedfnju ^ncurses@6.2%intel@19.1.2.254~symlinks+termlib arch=linux-rhel7-x86_64 | |
| [^] d4pg4b2 ^tar@1.28%intel@19.1.2.254 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-x86_64 | |
| - nayogh4 ^ninja@1.10.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] i3t5fut ^py-cython@0.29.21%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] mr7m2z7 ^py-mpi4py@3.0.3%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] l643i7a ^py-numpy@1.19.4%intel@19.1.2.254+blas+lapack arch=linux-rhel7-x86_64 | |
| [^] nnxc4wm ^intel-mkl@2018.3.222%intel@19.1.2.254~ilp64+shared threads=none arch=linux-rhel7-x86_64 | |
| [+] zniig3b ^py-pytest-cov@2.8.1%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] 2v5wfwa ^py-coverage@5.3%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] kej56sd ^readline@8.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> bison@3.6.4 : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ymcya3lbfxylkvsbomj2rbzbvecsldu2) | |
| ==> cmake@3.15.7 : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-mxqypexiy6wmh4hpnmf4lbwwwqhxzscg) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-pvpzjklfqyl55rerdxp63j32kpqkfr4z) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.25.hmpt-l6dob7 (external hpe-mpi-2.25.hmpt-nnhu6ziqp6ramcgkmky7i3e2ll5vl5ey) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-wjshhipoj5m66agnke3p2dsjf32qntuf) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/spdlog-1.8.1-gwht6m | |
| ==> python@3.8.3 : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-icfhbitmltpoj6w6vghr23ac5erldiic) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libyaml-0.2.4-4237mp | |
| ==> flex@2.6.4 : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-5mabxtbvp5xw7gfjcac32iffw27sdssk) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bzip2-1.0.8-vatuhz (external bzip2-1.0.8-6zbb66a3uunskwyljh6sbgo36hbo7lj4) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libiconv-1.16-qlmq4d | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/pkgconf-1.7.3-2qyzkd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/xz-5.2.5-wzx3yy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ncurses-6.2-xvsnay (external ncurses-6.2-nedfnju3ptngli3lpj3occtiuoe2x6e3) | |
| [+] /usr (external tar-1.28-d4pg4b2ncvxd3p2ptw3j4os6jb5a7yvy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/intel-mkl-2018.3.222-xjuqsf (external intel-mkl-2018.3.222-nnxc4wmon4s26gfyily3n6tqa43p36rj) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/readline-8.0-f2v4sr (external readline-8.0-kej56sdf2cwo7ximwd5foo34wzwveqxc) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/reportinglib-2.5.6-7eg3tq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/hdf5-1.10.7-pjaxv6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-setuptools-50.3.2-xfgkmk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyparsing-2.4.2-vpsqgc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-six-1.16.0-xgnwei | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-wcwidth-0.1.7-za7jmv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-attrs-20.3.0-kcyedy | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-mpmath-1.1.0-d6t5uh | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-markupsafe-1.1.1-oe2hrf | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-nayogh4gvnag7ybxc2ud5dt4ckxod3cc) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pytz-2020.1-oe2c27 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pluggy-0.13.0-gc3zsi | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-py-1.8.0-557ica | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-more-itertools-8.7.0-mikhjg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyyaml-5.3.1-chpzzl | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libxml2-2.9.10-6lr2um | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libsonata-report-1.0.0.20211007-2gn7wj | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-coverage-5.3-2v5wfw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-mpi4py-3.0.3-mr7m2z | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-cython-0.29.21-i3t5fu | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-packaging-19.2-hziuwh | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-sympy-1.4-runxrm | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-babel-2.7.0-yrbfda | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/gettext-0.21-6vrzcu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-numpy-1.19.4-l643i7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pytest-5.3.4-jo63uk | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-jinja2-2.10.3-ubikts | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pytest-cov-2.8.1-zniig3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/nmodl-develop-lqyttq | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/coreneuron-develop-cwjs4t | |
| ==> Installing neuron-develop-jhigcl7ephcbe47kbyz2znl76v2kaeev | |
| ==> No binary for neuron-develop-jhigcl7ephcbe47kbyz2znl76v2kaeev found: installing from source | |
| ==> Warning: Missing a source id for nmodl@develop | |
| ==> Warning: Missing a source id for neuron@develop | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| Session terminated, killing shell... ...killed. | |
| srun: Job step aborted: Waiting up to 32 seconds for job step to finish. | |
| slurmstepd: error: *** STEP 141071.4 ON r1i5n23 CANCELLED AT 2021-12-21T14:49:05 DUE TO TIME LIMIT *** | |
| srun: error: r1i5n23: task 0: Terminated | |
| section_end:1640094547:step_script [0K[31;1mERROR: Job failed: execution took longer than 1h0m0s seconds | |
| [0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1640088217:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1640088217:resolve_secrets [0Ksection_start:1640088217:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor522135339, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 30092, build ref 27bd6c88db277042842987f0c6748ae9ba9e57f3, job ID 112518 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112518 | |
| A slurm job will be created with name GL_J112518_PROD_P112_CP2_C1 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 140962 | |
| job state: R | |
| section_end:1640088219:prepare_executor [0Ksection_start:1640088219:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i4n32 via bbpv1.epfl.ch... | |
| section_end:1640088222:prepare_script [0Ksection_start:1640088222:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1640088222:get_sources [0Ksection_start:1640088222:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for nmodl-nvhpc-6...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=273074 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1640088232:restore_cache [0Ksection_start:1640088232:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (112516)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=273986 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=112516 responseStatus[0;m=200 OK token[0;m=RF9a3MuA | |
| section_end:1640088233:download_artifacts [0Ksection_start:1640088233:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112518/_/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112518/_/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112518/_/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112518/_/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112518/_/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install nmodl@develop%nvhpc~legacy-unit ^bison%gcc^flex%gcc^py-jinja2%gcc^py-sympy%gcc^py-pyyaml%gcc | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for nmodl@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be nswa6573eazhleffns23ijmh436w7top | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112518/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112518/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Tue Dec 21 13:05:47 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.45 / 0.51 (88.40 %) | |
| Files: 1714 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'nswa6573eazhleffns23ijmh436w7top' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - nmodl@develop%nvhpc~legacy-unit | |
| - ^bison%gcc | |
| - ^flex%gcc | |
| - ^py-jinja2%gcc | |
| - ^py-pyyaml%gcc | |
| - ^py-sympy%gcc | |
| Concretized | |
| -------------------------------- | |
| - nswa657 nmodl@develop%nvhpc@21.9~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - mz42odj ^bison@3.6.4%nvhpc@21.9 patches=ad81ef1b088459a396d908295afc3809f9a25076efaa459cdd2f21eabd1f4b16 arch=linux-rhel7-x86_64 | |
| - lpu6i7p ^cmake@3.15.7%nvhpc@21.9~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| - nlmxfru ^flex@2.6.4%nvhpc@21.9+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| - avc6rx5 ^ninja@1.10.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| - ccuqt3m ^py-jinja2@2.10.3%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| - hg7eomm ^py-babel@2.7.0%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| - 5ytmph6 ^py-pytz@2020.1%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] 7bw7pw5 ^py-setuptools@50.3.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ni2y6im ^python@3.8.3%nvhpc@21.9+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| - uu54yde ^py-markupsafe@1.1.1%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] rndnnfg ^py-pytest@5.3.4%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] iugmk34 ^py-attrs@20.3.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] kfhiued ^py-more-itertools@8.7.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] 43elgth ^py-packaging@19.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] kcc57g2 ^py-pyparsing@2.4.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] qctdzu4 ^py-six@1.16.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] npfkk2d ^py-pluggy@0.13.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] yuqhyr2 ^py-setuptools-scm@4.1.2%nvhpc@21.9+toml arch=linux-rhel7-x86_64 | |
| [^] bk3d6wo ^py-toml@0.10.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ybqmc22 ^py-py@1.8.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] afmj4ex ^py-wcwidth@0.1.7%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| - sujyde4 ^py-pyyaml@5.3.1%gcc@9.3.0+libyaml arch=linux-rhel7-x86_64 | |
| [^] ggibzjm ^libyaml@0.2.4%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| - oekgd2o ^py-sympy@1.4%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| - hsn2r4n ^py-mpmath@1.1.0%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> bison@3.6.4 : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-mz42odjxwfev23mgclgpgkustsebup72) | |
| ==> cmake@3.15.7 : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-lpu6i7pkviopkugggid2tave7uyd6y2j) | |
| ==> flex@2.6.4 : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-nlmxfrujm6vsjou3blvzzwtcyjkloybu) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-avc6rx55mmu6uajw24ije7oqw7ge6r3w) | |
| ==> python@3.8.3 : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-ni2y6imbyi6y34r36orewroy7viqedhy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/libyaml-0.2.4-ggibzj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-setuptools-50.3.2-7bw7pw | |
| ==> Installing py-mpmath-1.1.0-hsn2r4nbqjhzewaw5soovd2t5ud7cpxi | |
| ==> No binary for py-mpmath-1.1.0-hsn2r4nbqjhzewaw5soovd2t5ud7cpxi found: installing from source | |
| ==> Warning: Missing a source id for nmodl@develop | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/fc/fc17abe05fbab3382b61a123c398508183406fa132e0223874578e20946499f6.tar.gz | |
| ==> py-mpmath: Executing phase: 'build' | |
| ==> py-mpmath: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-mpmath-1.1.0-hsn2r4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-six-1.16.0-qctdzu | |
| ==> Installing py-pyyaml-5.3.1-sujyde4lpezqcdg4rwhbpoaratxzarxk | |
| ==> No binary for py-pyyaml-5.3.1-sujyde4lpezqcdg4rwhbpoaratxzarxk found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/b8/b8eac752c5e14d3eca0e6dd9199cd627518cb5ec06add0de9d32baeee6fe645d.tar.gz | |
| ==> py-pyyaml: Executing phase: 'build_ext' | |
| ==> py-pyyaml: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pyyaml-5.3.1-sujyde | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pyparsing-2.4.2-kcc57g | |
| ==> Installing py-pytz-2020.1-5ytmph6jauaabucz5ftlb3luonjitpyh | |
| ==> No binary for py-pytz-2020.1-5ytmph6jauaabucz5ftlb3luonjitpyh found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/c3/c35965d010ce31b23eeb663ed3cc8c906275d6be1a34393a1d73a41febf4a048.tar.gz | |
| ==> py-pytz: Executing phase: 'build' | |
| ==> py-pytz: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pytz-2020.1-5ytmph | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-attrs-20.3.0-iugmk3 | |
| ==> Installing py-markupsafe-1.1.1-uu54yden3pmltnbphrqkavx46jvq7xnu | |
| ==> No binary for py-markupsafe-1.1.1-uu54yden3pmltnbphrqkavx46jvq7xnu found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/29/29872e92839765e546828bb7754a68c418d927cd064fd4708fab9fe9c8bb116b.tar.gz | |
| ==> py-markupsafe: Executing phase: 'build' | |
| ==> py-markupsafe: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-markupsafe-1.1.1-uu54yd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-wcwidth-0.1.7-afmj4e | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-toml-0.10.0-bk3d6w | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-more-itertools-8.7.0-kfhiue | |
| ==> Installing py-sympy-1.4-oekgd2ou3e7lvizgzw7ztjyx5npcnhjc | |
| ==> No binary for py-sympy-1.4-oekgd2ou3e7lvizgzw7ztjyx5npcnhjc found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/71/71a11e5686ae7ab6cb8feb5bd2651ef4482f8fd43a7c27e645a165e4353b23e1.tar.gz | |
| ==> py-sympy: Executing phase: 'build' | |
| ==> py-sympy: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-sympy-1.4-oekgd2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-packaging-19.2-43elgt | |
| ==> Installing py-babel-2.7.0-hg7eommvskkocenyvv7wvashro4vnb2o | |
| ==> No binary for py-babel-2.7.0-hg7eommvskkocenyvv7wvashro4vnb2o found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/e8/e86135ae101e31e2c8ec20a4e0c5220f4eed12487d5cf3f78be7e98d3a57fc28.tar.gz | |
| ==> py-babel: Executing phase: 'build' | |
| ==> py-babel: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-babel-2.7.0-hg7eom | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-setuptools-scm-4.1.2-yuqhyr | |
| ==> Installing py-jinja2-2.10.3-ccuqt3mppqfwu2gdnafhdw6kj77bmc2e | |
| ==> No binary for py-jinja2-2.10.3-ccuqt3mppqfwu2gdnafhdw6kj77bmc2e found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/9f/9fe95f19286cfefaa917656583d020be14e7859c6b0252588391e47db34527de.tar.gz | |
| ==> py-jinja2: Executing phase: 'build' | |
| ==> py-jinja2: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-jinja2-2.10.3-ccuqt3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pluggy-0.13.0-npfkk2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-py-1.8.0-ybqmc2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pytest-5.3.4-rndnnf | |
| ==> Installing nmodl-develop-nswa6573eazhleffns23ijmh436w7top | |
| ==> No binary for nmodl-develop-nswa6573eazhleffns23ijmh436w7top found: installing from source | |
| ==> nmodl: Executing phase: 'cmake' | |
| ==> nmodl: Executing phase: 'build' | |
| ==> nmodl: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.9/nmodl-develop-nswa65 | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112518/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112518/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Tue Dec 21 13:26:41 2021 | |
| Hits: 131 / 135 (97.04 %) | |
| Direct: 33 / 135 (24.44 %) | |
| Preprocessed: 98 / 102 (96.08 %) | |
| Misses: 4 | |
| Direct: 102 | |
| Preprocessed: 4 | |
| Uncacheable: 26 | |
| Primary storage: | |
| Hits: 164 / 270 (60.74 %) | |
| Misses: 106 | |
| Cache size (GB): 0.45 / 0.51 (88.61 %) | |
| Files: 1720 | |
| Uncacheable: | |
| Called for linking: 26 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1640089605:step_script [0Ksection_start:1640089605:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache nmodl-nvhpc-6...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=19291 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache/: found 2281 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/nmodl-nvhpc-6[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1640089630:archive_cache [0Ksection_start:1640089630:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=21253 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=112518 responseStatus[0;m=201 Created token[0;m=CmWsdAHm | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=21307 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=112518 responseStatus[0;m=201 Created token[0;m=CmWsdAHm | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=21382 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=112518 responseStatus[0;m=201 Created token[0;m=CmWsdAHm | |
| section_end:1640089632:upload_artifacts_on_success [0Ksection_start:1640089632:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1640089633:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1640088217:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1640088217:resolve_secrets [0Ksection_start:1640088217:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor673135313, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 30092, build ref 27bd6c88db277042842987f0c6748ae9ba9e57f3, job ID 112517 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112517 | |
| A slurm job will be created with name GL_J112517_PROD_P112_CP0_C0 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 140961 | |
| job state: R | |
| section_end:1640088218:prepare_executor [0Ksection_start:1640088218:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i4n32 via bbpv1.epfl.ch... | |
| section_end:1640088222:prepare_script [0Ksection_start:1640088222:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1640088222:get_sources [0Ksection_start:1640088222:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for nmodl-intel-6...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=273044 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1640088229:restore_cache [0Ksection_start:1640088229:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (112516)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=273588 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=112516 responseStatus[0;m=200 OK token[0;m=RF9a3MuA | |
| section_end:1640088230:download_artifacts [0Ksection_start:1640088230:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112517/_/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112517/_/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112517/_/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112517/_/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112517/_/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install nmodl@develop%intel~legacy-unit | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for nmodl@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be lqyttqytclxdwwickak7uvjmb6a3au3g | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112517/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112517/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Tue Dec 21 13:05:47 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.47 / 0.51 (91.60 %) | |
| Files: 510 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'lqyttqytclxdwwickak7uvjmb6a3au3g' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - nmodl@develop%intel~legacy-unit | |
| Concretized | |
| -------------------------------- | |
| - lqyttqy nmodl@develop%intel@19.1.2.254~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - ymcya3l ^bison@3.6.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - mxqypex ^cmake@3.15.7%intel@19.1.2.254~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| - 5mabxtb ^flex@2.6.4%intel@19.1.2.254+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| - nayogh4 ^ninja@1.10.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - ubiktsv ^py-jinja2@2.10.3%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - yrbfda2 ^py-babel@2.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] oe2c27i ^py-pytz@2020.1%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] xfgkmkd ^py-setuptools@50.3.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] icfhbit ^python@3.8.3%intel@19.1.2.254+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| - oe2hrft ^py-markupsafe@1.1.1%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - jo63uk3 ^py-pytest@5.3.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] kcyedyh ^py-attrs@20.3.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - mikhjgq ^py-more-itertools@8.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - hziuwhj ^py-packaging@19.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] vpsqgcg ^py-pyparsing@2.4.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] xgnwei3 ^py-six@1.16.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - gc3zsis ^py-pluggy@0.13.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ze65gmo ^py-setuptools-scm@4.1.2%intel@19.1.2.254+toml arch=linux-rhel7-x86_64 | |
| [^] p553wsa ^py-toml@0.10.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - 557icag ^py-py@1.8.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - za7jmvs ^py-wcwidth@0.1.7%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] chpzzlm ^py-pyyaml@5.3.1%intel@19.1.2.254+libyaml arch=linux-rhel7-x86_64 | |
| [^] 4237mpr ^libyaml@0.2.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - runxrmn ^py-sympy@1.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - d6t5uhn ^py-mpmath@1.1.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> bison@3.6.4 : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ymcya3lbfxylkvsbomj2rbzbvecsldu2) | |
| ==> cmake@3.15.7 : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-mxqypexiy6wmh4hpnmf4lbwwwqhxzscg) | |
| ==> flex@2.6.4 : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-5mabxtbvp5xw7gfjcac32iffw27sdssk) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-nayogh4gvnag7ybxc2ud5dt4ckxod3cc) | |
| ==> python@3.8.3 : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-icfhbitmltpoj6w6vghr23ac5erldiic) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libyaml-0.2.4-4237mp | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-setuptools-50.3.2-xfgkmk | |
| ==> Installing py-mpmath-1.1.0-d6t5uhnfv6vz76zvbq6dxzezju47q4b2 | |
| ==> No binary for py-mpmath-1.1.0-d6t5uhnfv6vz76zvbq6dxzezju47q4b2 found: installing from source | |
| ==> Warning: Missing a source id for nmodl@develop | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/fc/fc17abe05fbab3382b61a123c398508183406fa132e0223874578e20946499f6.tar.gz | |
| ==> py-mpmath: Executing phase: 'build' | |
| ==> py-mpmath: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-mpmath-1.1.0-d6t5uh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-six-1.16.0-xgnwei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyyaml-5.3.1-chpzzl | |
| ==> Installing py-more-itertools-8.7.0-mikhjgqoad5w4yqy27gs5e6resjbaofw | |
| ==> No binary for py-more-itertools-8.7.0-mikhjgqoad5w4yqy27gs5e6resjbaofw found: installing from source | |
| ==> Fetching https://pypi.io/packages/source/m/more-itertools/more-itertools-8.7.0.tar.gz | |
| ==> py-more-itertools: Executing phase: 'build' | |
| ==> py-more-itertools: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-more-itertools-8.7.0-mikhjg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pytz-2020.1-oe2c27 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-attrs-20.3.0-kcyedy | |
| ==> Installing py-wcwidth-0.1.7-za7jmvshfdsnmghmumjvxfinateuen3k | |
| ==> No binary for py-wcwidth-0.1.7-za7jmvshfdsnmghmumjvxfinateuen3k found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/3d/3df37372226d6e63e1b1e1eda15c594bca98a22d33a23832a90998faa96bc65e.tar.gz | |
| ==> py-wcwidth: Executing phase: 'build' | |
| ==> py-wcwidth: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-wcwidth-0.1.7-za7jmv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-toml-0.10.0-p553ws | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyparsing-2.4.2-vpsqgc | |
| ==> Installing py-markupsafe-1.1.1-oe2hrfthehpamljikolcjblr7mt52724 | |
| ==> No binary for py-markupsafe-1.1.1-oe2hrfthehpamljikolcjblr7mt52724 found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/29/29872e92839765e546828bb7754a68c418d927cd064fd4708fab9fe9c8bb116b.tar.gz | |
| ==> py-markupsafe: Executing phase: 'build' | |
| ==> py-markupsafe: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-markupsafe-1.1.1-oe2hrf | |
| ==> Installing py-sympy-1.4-runxrmnc6ccdqey2sq7njyz4u4i2x7xw | |
| ==> No binary for py-sympy-1.4-runxrmnc6ccdqey2sq7njyz4u4i2x7xw found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/71/71a11e5686ae7ab6cb8feb5bd2651ef4482f8fd43a7c27e645a165e4353b23e1.tar.gz | |
| ==> py-sympy: Executing phase: 'build' | |
| ==> py-sympy: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-sympy-1.4-runxrm | |
| ==> Installing py-babel-2.7.0-yrbfda2telivet3ruvwscmtafc7zoys7 | |
| ==> No binary for py-babel-2.7.0-yrbfda2telivet3ruvwscmtafc7zoys7 found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/e8/e86135ae101e31e2c8ec20a4e0c5220f4eed12487d5cf3f78be7e98d3a57fc28.tar.gz | |
| ==> py-babel: Executing phase: 'build' | |
| ==> py-babel: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-babel-2.7.0-yrbfda | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-setuptools-scm-4.1.2-ze65gm | |
| ==> Installing py-packaging-19.2-hziuwhjrhckeozwekkhwxabvm4onfilt | |
| ==> No binary for py-packaging-19.2-hziuwhjrhckeozwekkhwxabvm4onfilt found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/28/28b924174df7a2fa32c1953825ff29c61e2f5e082343165438812f00d3a7fc47.tar.gz | |
| ==> py-packaging: Executing phase: 'build' | |
| ==> py-packaging: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-packaging-19.2-hziuwh | |
| ==> Installing py-jinja2-2.10.3-ubiktsvw22gxnvhwzsoloqliz7czyhab | |
| ==> No binary for py-jinja2-2.10.3-ubiktsvw22gxnvhwzsoloqliz7czyhab found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/9f/9fe95f19286cfefaa917656583d020be14e7859c6b0252588391e47db34527de.tar.gz | |
| ==> py-jinja2: Executing phase: 'build' | |
| ==> py-jinja2: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-jinja2-2.10.3-ubikts | |
| ==> Installing py-pluggy-0.13.0-gc3zsisoxxbiopoa44i536m232c65zb4 | |
| ==> No binary for py-pluggy-0.13.0-gc3zsisoxxbiopoa44i536m232c65zb4 found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/fa/fa5fa1622fa6dd5c030e9cad086fa19ef6a0cf6d7a2d12318e10cb49d6d68f34.tar.gz | |
| ==> py-pluggy: Executing phase: 'build' | |
| ==> py-pluggy: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pluggy-0.13.0-gc3zsi | |
| ==> Installing py-py-1.8.0-557icag4kia4rysswd2uxdettfkewclq | |
| ==> No binary for py-py-1.8.0-557icag4kia4rysswd2uxdettfkewclq found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/dc/dc639b046a6e2cff5bbe40194ad65936d6ba360b52b3c3fe1d08a82dd50b5e53.tar.gz | |
| ==> py-py: Executing phase: 'build' | |
| ==> py-py: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-py-1.8.0-557ica | |
| ==> Installing py-pytest-5.3.4-jo63uk3qcowoxe2ogccodpfmsdr2r557 | |
| ==> No binary for py-pytest-5.3.4-jo63uk3qcowoxe2ogccodpfmsdr2r557 found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/1d/1d122e8be54d1a709e56f82e2d85dcba3018313d64647f38a91aec88c239b600.tar.gz | |
| ==> py-pytest: Executing phase: 'build' | |
| ==> py-pytest: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pytest-5.3.4-jo63uk | |
| ==> Installing nmodl-develop-lqyttqytclxdwwickak7uvjmb6a3au3g | |
| ==> No binary for nmodl-develop-lqyttqytclxdwwickak7uvjmb6a3au3g found: installing from source | |
| ==> nmodl: Executing phase: 'cmake' | |
| ==> nmodl: Executing phase: 'build' | |
| ==> nmodl: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/nmodl-develop-lqyttq | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112517/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112517/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Tue Dec 21 13:27:55 2021 | |
| Hits: 109 / 135 (80.74 %) | |
| Direct: 26 / 135 (19.26 %) | |
| Preprocessed: 83 / 109 (76.15 %) | |
| Misses: 26 | |
| Direct: 109 | |
| Preprocessed: 26 | |
| Uncacheable: 28 | |
| Primary storage: | |
| Hits: 135 / 270 (50.00 %) | |
| Misses: 135 | |
| Cache size (GB): 0.46 / 0.51 (90.29 %) | |
| Files: 507 | |
| Cleanups: 3 | |
| Uncacheable: | |
| Called for linking: 28 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1640089676:step_script [0Ksection_start:1640089676:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache nmodl-intel-6...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=25002 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache/: found 1068 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/nmodl-intel-6[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1640089696:archive_cache [0Ksection_start:1640089696:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=26770 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=112517 responseStatus[0;m=201 Created token[0;m=WxfRYkMZ | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=26811 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=112517 responseStatus[0;m=201 Created token[0;m=WxfRYkMZ | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=26841 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=112517 responseStatus[0;m=201 Created token[0;m=WxfRYkMZ | |
| section_end:1640089698:upload_artifacts_on_success [0Ksection_start:1640089698:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1640089698:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| ! |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1640088172:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1640088172:resolve_secrets [0Ksection_start:1640088172:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor906781140, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 30092, build ref 27bd6c88db277042842987f0c6748ae9ba9e57f3, job ID 112516 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112516 | |
| A slurm job will be created with name GL_J112516_PROD_P112_CP0_C0 | |
| Job parameters: memory=512M, cpus_per_task=1, duration=10:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 140960 | |
| job state: R | |
| section_end:1640088173:prepare_executor [0Ksection_start:1640088173:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i4n32 via bbpv1.epfl.ch... | |
| section_end:1640088176:prepare_script [0Ksection_start:1640088176:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1640088176:get_sources [0Ksection_start:1640088176:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ touch spack_clone_variables.env[0;m | |
| [32;1m$ if [[ "${PARSE_GITHUB_PR_DESCRIPTIONS}" == "true" && "${CI_PIPELINE_SOURCE}" == "external_pull_request_event" ]]; then[0;m | |
| [32;1m$ cat > parse_description.py << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ cat parse_description.py[0;m | |
| from __future__ import print_function | |
| import os | |
| import re | |
| import requests | |
| pr_info = requests.get("https://api.github.com/repos/{}/pulls/{}".format( | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_TARGET_REPOSITORY'], | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_IID']), | |
| headers={'Accept': 'application/vnd.github.v3+json'}) | |
| pr_body = pr_info.json()["body"] | |
| # match something like NEURON_BRANCH=foo/bar | |
| pat = re.compile('^([A-Z0-9_]+)_([A-Z]+)=([A-Z0-9\-\_\/]+)$', re.IGNORECASE) | |
| def parse_term(m): | |
| ref_type = m.group(2).lower() | |
| if ref_type not in {'branch', 'tag', 'ref'}: return | |
| print('SPACK_PACKAGE_REF_' + m.group(1).lower() + '=' + ref_type + '="' + m.group(3) + '"') | |
| if pr_body is not None: | |
| for pr_body_line in pr_body.splitlines(): | |
| if not pr_body_line.startswith('CI_BRANCHES:'): continue | |
| for config_term in pr_body_line[12:].split(','): | |
| pat.sub(parse_term, config_term) | |
| [32;1m$ python parse_description.py > spack_clone_variables.env[0;m | |
| [32;1m$ cat spack_clone_variables.env[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ echo Using ${PWD} as a working directory common to the whole pipeline...[0;m | |
| Using /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112516/_ as a working directory common to the whole pipeline... | |
| [32;1m$ SPACK_BRANCH_PARSED=$(sed -n -e "s/^SPACK_PACKAGE_REF_spack=branch=\(['\"]\)\([^\1]\+\)\1/\2/p" spack_clone_variables.env)[0;m | |
| [32;1m$ SPACK_BRANCH=${SPACK_BRANCH_PARSED:-$SPACK_BRANCH}[0;m | |
| [32;1m$ echo Checking out the ${SPACK_BRANCH} of Spack...[0;m | |
| Checking out the develop of Spack... | |
| [32;1m$ git clone --depth 1 --single-branch --branch ${SPACK_BRANCH} ${SPACK_URL} spack[0;m | |
| Cloning into 'spack'... | |
| Checking out files: 9% (767/7696) Checking out files: 10% (770/7696) Checking out files: 11% (847/7696) Checking out files: 12% (924/7696) Checking out files: 13% (1001/7696) Checking out files: 14% (1078/7696) Checking out files: 15% (1155/7696) Checking out files: 16% (1232/7696) Checking out files: 17% (1309/7696) Checking out files: 17% (1382/7696) Checking out files: 18% (1386/7696) Checking out files: 19% (1463/7696) Checking out files: 20% (1540/7696) Checking out files: 21% (1617/7696) Checking out files: 22% (1694/7696) Checking out files: 23% (1771/7696) Checking out files: 24% (1848/7696) Checking out files: 24% (1864/7696) Checking out files: 25% (1924/7696) Checking out files: 26% (2001/7696) Checking out files: 27% (2078/7696) Checking out files: 28% (2155/7696) Checking out files: 29% (2232/7696) Checking out files: 30% (2309/7696) Checking out files: 31% (2386/7696) Checking out files: 31% (2420/7696) Checking out files: 32% (2463/7696) Checking out files: 33% (2540/7696) Checking out files: 34% (2617/7696) Checking out files: 35% (2694/7696) Checking out files: 36% (2771/7696) Checking out files: 37% (2848/7696) Checking out files: 38% (2925/7696) Checking out files: 38% (2973/7696) Checking out files: 39% (3002/7696) Checking out files: 40% (3079/7696) Checking out files: 41% (3156/7696) Checking out files: 42% (3233/7696) Checking out files: 43% (3310/7696) Checking out files: 44% (3387/7696) Checking out files: 44% (3404/7696) Checking out files: 45% (3464/7696) Checking out files: 46% (3541/7696) Checking out files: 47% (3618/7696) Checking out files: 48% (3695/7696) Checking out files: 49% (3772/7696) Checking out files: 50% (3848/7696) Checking out files: 51% (3925/7696) Checking out files: 51% (3937/7696) Checking out files: 52% (4002/7696) Checking out files: 53% (4079/7696) Checking out files: 54% (4156/7696) Checking out files: 55% (4233/7696) Checking out files: 56% (4310/7696) Checking out files: 57% (4387/7696) Checking out files: 57% (4419/7696) Checking out files: 58% (4464/7696) Checking out files: 59% (4541/7696) Checking out files: 60% (4618/7696) Checking out files: 61% (4695/7696) Checking out files: 61% (4729/7696) Checking out files: 62% (4772/7696) Checking out files: 63% (4849/7696) Checking out files: 64% (4926/7696) Checking out files: 65% (5003/7696) Checking out files: 66% (5080/7696) Checking out files: 67% (5157/7696) Checking out files: 68% (5234/7696) Checking out files: 68% (5293/7696) Checking out files: 69% (5311/7696) Checking out files: 70% (5388/7696) Checking out files: 71% (5465/7696) Checking out files: 72% (5542/7696) Checking out files: 73% (5619/7696) Checking out files: 73% (5690/7696) Checking out files: 74% (5696/7696) Checking out files: 75% (5772/7696) Checking out files: 76% (5849/7696) Checking out files: 77% (5926/7696) Checking out files: 78% (6003/7696) Checking out files: 79% (6080/7696) Checking out files: 79% (6112/7696) Checking out files: 80% (6157/7696) Checking out files: 81% (6234/7696) Checking out files: 82% (6311/7696) Checking out files: 83% (6388/7696) Checking out files: 84% (6465/7696) Checking out files: 85% (6542/7696) Checking out files: 85% (6594/7696) Checking out files: 86% (6619/7696) Checking out files: 87% (6696/7696) Checking out files: 88% (6773/7696) Checking out files: 89% (6850/7696) Checking out files: 90% (6927/7696) Checking out files: 91% (7004/7696) Checking out files: 92% (7081/7696) Checking out files: 93% (7158/7696) Checking out files: 94% (7235/7696) Checking out files: 94% (7263/7696) Checking out files: 95% (7312/7696) Checking out files: 96% (7389/7696) Checking out files: 97% (7466/7696) Checking out files: 98% (7543/7696) Checking out files: 99% (7620/7696) Checking out files: 100% (7696/7696) Checking out files: 100% (7696/7696), done. | |
| [32;1m$ cp /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/config/*.yaml spack/etc/spack[0;m | |
| [32;1m$ SPACK_ROOT=${PWD}/spack[0;m | |
| [32;1m$ echo "SPACK_ROOT=${SPACK_ROOT}" >> spack_clone_variables.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ spack config --scope site add "config:ccache:true"[0;m | |
| [32;1m$ spack config get config[0;m | |
| config: | |
| install_tree: | |
| projections: | |
| all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| root: $spack/opt/spack | |
| build_jobs: 36 | |
| ccache: true | |
| template_dirs: | |
| - $spack/share/spack/templates | |
| # Locations where different types of modules should be installed. | |
| module_roots: | |
| tcl: $spack/share/spack/modules | |
| lmod: $spack/share/spack/lmod | |
| build_stage: | |
| - $tempdir/$user/spack-stage | |
| - ~/.spack/stage | |
| # - $spack/var/spack/stage | |
| # Directory in which to run tests and store test results. | |
| # Tests will be stored in directories named by date/time and package | |
| # name/hash. | |
| test_stage: ~/.spack/test | |
| source_cache: $spack/var/spack/cache | |
| misc_cache: ~/.spack/cache | |
| connect_timeout: 10 | |
| verify_ssl: true | |
| suppress_gpg_warnings: false | |
| install_missing_compilers: false | |
| checksum: true | |
| dirty: false | |
| build_language: C | |
| locks: true | |
| concretizer: original | |
| db_lock_timeout: 300 | |
| package_lock_timeout: | |
| shared_linking: rpath | |
| allow_sgid: true | |
| debug: false | |
| [32;1m$ echo "SPACK_USE_CCACHE=true" >> spack_clone_variables.env[0;m | |
| [32;1m$ if [[ "${CI_PIPELINE_SOURCE}" == "pipeline" ]]; then[0;m | |
| section_end:1640088204:step_script [0Ksection_start:1640088204:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=271984 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=112516 responseStatus[0;m=201 Created token[0;m=RF9a3MuA | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=272008 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=112516 responseStatus[0;m=201 Created token[0;m=RF9a3MuA | |
| section_end:1640088206:upload_artifacts_on_success [0Ksection_start:1640088206:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1640088206:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1640089351:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1640089351:resolve_secrets [0Ksection_start:1640089351:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor694779953, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 30092, build ref 27bd6c88db277042842987f0c6748ae9ba9e57f3, job ID 112526 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112526 | |
| A slurm job will be created with name GL_J112526_PROD_P112_CP3_C3 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 141050 | |
| job state: R | |
| section_end:1640089352:prepare_executor [0Ksection_start:1640089352:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch... | |
| section_end:1640089354:prepare_script [0Ksection_start:1640089354:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1640089354:get_sources [0Ksection_start:1640089354:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:gpu (112522)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=24397 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=112522 responseStatus[0;m=200 OK token[0;m=hpX5gjz8 | |
| section_end:1640089355:download_artifacts [0Ksection_start:1640089355:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i4n32 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20211221-1223 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112522/_/spack-build/spack-stage-coreneuron-develop-d5jp63omt63hmfz46ab5b5um2wtosys4/spack-build-d5jp63o | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| 1/18 Test #1: cmd_interface_test ..................... Passed 1.08 sec | |
| Start 7: ring_binqueue_TEST | |
| 2/18 Test #2: interleave_info_constructor_test ....... Passed 2.28 sec | |
| 3/18 Test #3: alignment_test ......................... Passed 2.89 sec | |
| Start 8: ring_multisend_TEST | |
| 4/18 Test #4: queuing_test ........................... Passed 4.12 sec | |
| 5/18 Test #5: lfp_test ............................... Passed 4.15 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 6/18 Test #6: ring_TEST .............................. Passed 19.56 sec | |
| Start 10: ring_permute1_TEST | |
| 7/18 Test #7: ring_binqueue_TEST ..................... Passed 32.62 sec | |
| Start 11: ring_permute2_TEST | |
| 8/18 Test #9: ring_spike_buffer_TEST ................. Passed 29.89 sec | |
| Start 12: ring_gap_TEST | |
| 9/18 Test #8: ring_multisend_TEST .................... Passed 31.28 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 10/18 Test #10: ring_permute1_TEST ..................... Passed 19.84 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 11/18 Test #11: ring_permute2_TEST ..................... Passed 33.34 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 12/18 Test #12: ring_gap_TEST ..........................***Timeout 1500.04 sec | |
| num_mpi=8 | |
| Info : 4 GPUs shared by 8 ranks per node | |
| Duke, Yale, and the BlueBrain Project -- Copyright 1984-2020 | |
| Version : 1.0 27bd6c88 (2021-12-21 11:30:07 +0100) | |
| Additional mechanisms from files | |
| exp2syn.mod expsyn.mod halfgap.mod hh.mod netstim.mod passive.mod pattern.mod stim.mod svclmp.mod | |
| Memory (MBs) : After mk_mech : Max 229.4102, Min 229.3477, Avg 229.4004 | |
| GPU Memory (MBs) : Used = 1920.000000, Free = 30590.500000, Total = 32510.500000 | |
| Memory (MBs) : After MPI_Init : Max 229.4102, Min 229.3477, Avg 229.4004 | |
| GPU Memory (MBs) : Used = 1922.000000, Free = 30588.500000, Total = 32510.500000 | |
| Memory (MBs) : Before nrn_setup : Max 229.6484, Min 229.5898, Avg 229.5972 | |
| GPU Memory (MBs) : Used = 1922.000000, Free = 30588.500000, Total = 32510.500000 | |
| WARNING : GPU execution requires --cell-permute type 1 or 2. Setting it to 1. | |
| Model uses gap junctions | |
| Info : The number of input datasets are less than ranks, some ranks will be idle! | |
| Setup Done : 0.19 seconds | |
| Model size : 93.06 kB | |
| Memory (MBs) : After nrn_setup : Max 229.6758, Min 229.6211, Avg 229.6279 | |
| GPU Memory (MBs) : Used = 1922.000000, Free = 30588.500000, Total = 32510.500000 | |
| GENERAL PARAMETERS | |
| --mpi=true | |
| --mpi-lib= | |
| --gpu=true | |
| --dt=0.025 | |
| --tstop=100 | |
| GPU | |
| --nwarp=0 | |
| --cell-permute=0 | |
| --cuda-interface=false | |
| INPUT PARAMETERS | |
| --voltage=-65 | |
| --seed=-1 | |
| --datpath=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112522/_/spack-build/spack-stage-coreneuron-develop-d5jp63omt63hmfz46ab5b5um2wtosys4/spack-src/tests/integration/ring_gap | |
| --filesdat=files.dat | |
| --pattern= | |
| --report-conf= | |
| --restore= | |
| PARALLEL COMPUTATION PARAMETERS | |
| --threading=false | |
| --skip_mpi_finalize=false | |
| SPIKE EXCHANGE | |
| --ms_phases=2 | |
| --ms_subintervals=2 | |
| --multisend=false | |
| --spk_compress=0 | |
| --binqueue=false | |
| CONFIGURATION | |
| --spikebuf=100000 | |
| --prcellgid=-1 | |
| --forwardskip=0 | |
| --celsius=6.3 | |
| --mindelay=10 | |
| --report-buffer-size=4 | |
| OUTPUT PARAMETERS | |
| --dt_io=0.1 | |
| --outpath=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112522/_/spack-build/spack-stage-coreneuron-develop-d5jp63omt63hmfz46ab5b5um2wtosys4/spack-build-d5jp63o/tests/integration/ring_gap | |
| --checkpoint= | |
| Start time (t) = 0 | |
| Memory (MBs) : After mk_spikevec_buffer : Max 229.6758, Min 229.6211, Avg 229.6279 | |
| GPU Memory (MBs) : Used = 1922.000000, Free = 30588.500000, Total = 32510.500000 | |
| Memory (MBs) : After nrn_finitialize : Max 296.1797, Min 229.7852, Avg 246.3784 | |
| GPU Memory (MBs) : Used = 1590.000000, Free = 30920.500000, Total = 32510.500000 | |
| Start 16: ring_gap_permute2_TEST | |
| 13/18 Test #13: ring_gap_binqueue_TEST .................***Timeout 1500.10 sec | |
| num_mpi=8 | |
| Info : 4 GPUs shared by 8 ranks per node | |
| Duke, Yale, and the BlueBrain Project -- Copyright 1984-2020 | |
| Version : 1.0 27bd6c88 (2021-12-21 11:30:07 +0100) | |
| Additional mechanisms from files | |
| exp2syn.mod expsyn.mod halfgap.mod hh.mod netstim.mod passive.mod pattern.mod stim.mod svclmp.mod | |
| Memory (MBs) : After mk_mech : Max 229.4141, Min 229.3516, Avg 229.4014 | |
| GPU Memory (MBs) : Used = 1848.000000, Free = 30662.500000, Total = 32510.500000 | |
| Memory (MBs) : After MPI_Init : Max 229.5938, Min 229.4062, Avg 229.4316 | |
| GPU Memory (MBs) : Used = 1848.000000, Free = 30662.500000, Total = 32510.500000 | |
| Memory (MBs) : Before nrn_setup : Max 229.7656, Min 229.5938, Avg 229.6152 | |
| GPU Memory (MBs) : Used = 1848.000000, Free = 30662.500000, Total = 32510.500000 | |
| WARNING : GPU execution requires --cell-permute type 1 or 2. Setting it to 1. | |
| Model uses gap junctions | |
| Info : The number of input datasets are less than ranks, some ranks will be idle! | |
| Setup Done : 0.87 seconds | |
| Model size : 93.06 kB | |
| Memory (MBs) : After nrn_setup : Max 229.7930, Min 229.6250, Avg 229.6460 | |
| GPU Memory (MBs) : Used = 1848.000000, Free = 30662.500000, Total = 32510.500000 | |
| GENERAL PARAMETERS | |
| --mpi=true | |
| --mpi-lib= | |
| --gpu=true | |
| --dt=0.025 | |
| --tstop=100 | |
| GPU | |
| --nwarp=0 | |
| --cell-permute=0 | |
| --cuda-interface=false | |
| INPUT PARAMETERS | |
| --voltage=-65 | |
| --seed=-1 | |
| --datpath=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112522/_/spack-build/spack-stage-coreneuron-develop-d5jp63omt63hmfz46ab5b5um2wtosys4/spack-src/tests/integration/ring_gap | |
| --filesdat=files.dat | |
| --pattern= | |
| --report-conf= | |
| --restore= | |
| PARALLEL COMPUTATION PARAMETERS | |
| --threading=false | |
| --skip_mpi_finalize=false | |
| SPIKE EXCHANGE | |
| --ms_phases=2 | |
| --ms_subintervals=2 | |
| --multisend=false | |
| --spk_compress=0 | |
| --binqueue=true | |
| CONFIGURATION | |
| --spikebuf=100000 | |
| --prcellgid=-1 | |
| --forwardskip=0 | |
| --celsius=6.3 | |
| --mindelay=10 | |
| --report-buffer-size=4 | |
| OUTPUT PARAMETERS | |
| --dt_io=0.1 | |
| --outpath=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112522/_/spack-build/spack-stage-coreneuron-develop-d5jp63omt63hmfz46ab5b5um2wtosys4/spack-build-d5jp63o/tests/integration/ring_gap_binqueue | |
| --checkpoint= | |
| Start time (t) = 0 | |
| Memory (MBs) : After mk_spikevec_buffer : Max 229.7930, Min 229.6250, Avg 229.6460 | |
| GPU Memory (MBs) : Used = 1848.000000, Free = 30662.500000, Total = 32510.500000 | |
| Memory (MBs) : After nrn_finitialize : Max 296.2969, Min 229.7891, Avg 246.3950 | |
| GPU Memory (MBs) : Used = 1848.000000, Free = 30662.500000, Total = 32510.500000 | |
| Start 17: ring_permute2_cudaInterface_TEST | |
| 14/18 Test #14: ring_gap_multisend_TEST ................***Timeout 1500.02 sec | |
| num_mpi=8 | |
| Info : 4 GPUs shared by 8 ranks per node | |
| Duke, Yale, and the BlueBrain Project -- Copyright 1984-2020 | |
| Version : 1.0 27bd6c88 (2021-12-21 11:30:07 +0100) | |
| Additional mechanisms from files | |
| exp2syn.mod expsyn.mod halfgap.mod hh.mod netstim.mod passive.mod pattern.mod stim.mod svclmp.mod | |
| Memory (MBs) : After mk_mech : Max 229.4141, Min 229.3516, Avg 229.4014 | |
| GPU Memory (MBs) : Used = 1886.000000, Free = 30624.500000, Total = 32510.500000 | |
| Memory (MBs) : After MPI_Init : Max 229.5938, Min 229.4062, Avg 229.4316 | |
| GPU Memory (MBs) : Used = 1888.000000, Free = 30622.500000, Total = 32510.500000 | |
| Memory (MBs) : Before nrn_setup : Max 229.7656, Min 229.5938, Avg 229.6152 | |
| GPU Memory (MBs) : Used = 1922.000000, Free = 30588.500000, Total = 32510.500000 | |
| WARNING : GPU execution requires --cell-permute type 1 or 2. Setting it to 1. | |
| Model uses gap junctions | |
| Info : The number of input datasets are less than ranks, some ranks will be idle! | |
| Setup Done : 1.58 seconds | |
| Model size : 93.34 kB | |
| Memory (MBs) : After nrn_setup : Max 229.9609, Min 229.6250, Avg 229.6880 | |
| GPU Memory (MBs) : Used = 1844.000000, Free = 30666.500000, Total = 32510.500000 | |
| GENERAL PARAMETERS | |
| --mpi=true | |
| --mpi-lib= | |
| --gpu=true | |
| --dt=0.025 | |
| --tstop=100 | |
| GPU | |
| --nwarp=0 | |
| --cell-permute=0 | |
| --cuda-interface=false | |
| INPUT PARAMETERS | |
| --voltage=-65 | |
| --seed=-1 | |
| --datpath=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112522/_/spack-build/spack-stage-coreneuron-develop-d5jp63omt63hmfz46ab5b5um2wtosys4/spack-src/tests/integration/ring_gap | |
| --filesdat=files.dat | |
| --pattern= | |
| --report-conf= | |
| --restore= | |
| PARALLEL COMPUTATION PARAMETERS | |
| --threading=false | |
| --skip_mpi_finalize=false | |
| SPIKE EXCHANGE | |
| --ms_phases=2 | |
| --ms_subintervals=2 | |
| --multisend=true | |
| --spk_compress=0 | |
| --binqueue=false | |
| CONFIGURATION | |
| --spikebuf=100000 | |
| --prcellgid=-1 | |
| --forwardskip=0 | |
| --celsius=6.3 | |
| --mindelay=10 | |
| --report-buffer-size=4 | |
| OUTPUT PARAMETERS | |
| --dt_io=0.1 | |
| --outpath=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112522/_/spack-build/spack-stage-coreneuron-develop-d5jp63omt63hmfz46ab5b5um2wtosys4/spack-build-d5jp63o/tests/integration/ring_gap_multisend | |
| --checkpoint= | |
| Start time (t) = 0 | |
| Memory (MBs) : After mk_spikevec_buffer : Max 229.9609, Min 229.6250, Avg 229.6880 | |
| GPU Memory (MBs) : Used = 1846.000000, Free = 30664.500000, Total = 32510.500000 | |
| Memory (MBs) : After nrn_finitialize : Max 296.2695, Min 229.7617, Avg 246.3677 | |
| GPU Memory (MBs) : Used = 1848.000000, Free = 30662.500000, Total = 32510.500000 | |
| Start 18: ring_gap_permute2_cudaInterface_TEST | |
| 15/18 Test #15: ring_gap_permute1_TEST .................***Timeout 1500.05 sec | |
| num_mpi=8 | |
| Info : 4 GPUs shared by 8 ranks per node | |
| Duke, Yale, and the BlueBrain Project -- Copyright 1984-2020 | |
| Version : 1.0 27bd6c88 (2021-12-21 11:30:07 +0100) | |
| Additional mechanisms from files | |
| exp2syn.mod expsyn.mod halfgap.mod hh.mod netstim.mod passive.mod pattern.mod stim.mod svclmp.mod | |
| Memory (MBs) : After mk_mech : Max 229.4141, Min 229.3516, Avg 229.4014 | |
| GPU Memory (MBs) : Used = 2462.000000, Free = 30048.500000, Total = 32510.500000 | |
| Memory (MBs) : After MPI_Init : Max 229.5938, Min 229.4062, Avg 229.4316 | |
| GPU Memory (MBs) : Used = 2462.000000, Free = 30048.500000, Total = 32510.500000 | |
| Memory (MBs) : Before nrn_setup : Max 229.7656, Min 229.5938, Avg 229.6152 | |
| GPU Memory (MBs) : Used = 2462.000000, Free = 30048.500000, Total = 32510.500000 | |
| Model uses gap junctions | |
| Info : The number of input datasets are less than ranks, some ranks will be idle! | |
| Setup Done : 1.46 seconds | |
| Model size : 93.06 kB | |
| Memory (MBs) : After nrn_setup : Max 229.7930, Min 229.6250, Avg 229.6460 | |
| GPU Memory (MBs) : Used = 2462.000000, Free = 30048.500000, Total = 32510.500000 | |
| GENERAL PARAMETERS | |
| --mpi=true | |
| --mpi-lib= | |
| --gpu=true | |
| --dt=0.025 | |
| --tstop=100 | |
| GPU | |
| --nwarp=0 | |
| --cell-permute=1 | |
| --cuda-interface=false | |
| INPUT PARAMETERS | |
| --voltage=-65 | |
| --seed=-1 | |
| --datpath=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112522/_/spack-build/spack-stage-coreneuron-develop-d5jp63omt63hmfz46ab5b5um2wtosys4/spack-src/tests/integration/ring_gap | |
| --filesdat=files.dat | |
| --pattern= | |
| --report-conf= | |
| --restore= | |
| PARALLEL COMPUTATION PARAMETERS | |
| --threading=false | |
| --skip_mpi_finalize=false | |
| SPIKE EXCHANGE | |
| --ms_phases=2 | |
| --ms_subintervals=2 | |
| --multisend=false | |
| --spk_compress=0 | |
| --binqueue=false | |
| CONFIGURATION | |
| --spikebuf=100000 | |
| --prcellgid=-1 | |
| --forwardskip=0 | |
| --celsius=6.3 | |
| --mindelay=10 | |
| --report-buffer-size=4 | |
| OUTPUT PARAMETERS | |
| --dt_io=0.1 | |
| --outpath=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112522/_/spack-build/spack-stage-coreneuron-develop-d5jp63omt63hmfz46ab5b5um2wtosys4/spack-build-d5jp63o/tests/integration/ring_gap_permute1 | |
| --checkpoint= | |
| Start time (t) = 0 | |
| Memory (MBs) : After mk_spikevec_buffer : Max 229.7930, Min 229.6250, Avg 229.6460 | |
| GPU Memory (MBs) : Used = 2462.000000, Free = 30048.500000, Total = 32510.500000 | |
| Memory (MBs) : After nrn_finitialize : Max 296.2969, Min 229.7891, Avg 246.3950 | |
| GPU Memory (MBs) : Used = 2462.000000, Free = 30048.500000, Total = 32510.500000 | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_unpack: unpack error | |
| srun: error: Invalid IO init header version | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| 16/18 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 100.31 sec | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:48614]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:48696]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:48762]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:48764]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:48786]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:48894]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:48968]: Connection reset by peer | |
| 17/18 Test #16: ring_gap_permute2_TEST ................. Passed 348.18 sec | |
| 18/18 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 343.00 sec | |
| 78% tests passed, 4 tests failed out of 18 | |
| Total Test time (real) = 1882.48 sec | |
| The following tests FAILED: | |
| 12 - ring_gap_TEST (Timeout) | |
| 13 - ring_gap_binqueue_TEST (Timeout) | |
| 14 - ring_gap_multisend_TEST (Timeout) | |
| 15 - ring_gap_permute1_TEST (Timeout) | |
| Errors while running CTest | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.8.3 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:48982]: Connection reset by peer | |
| srun: error: ldir01u09: task 0: Exited with exit code 1 | |
| section_end:1640091278:step_script [0Ksection_start:1640091278:upload_artifacts_on_failure [0K[0K[36;1mUploading artifacts for failed job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=34129 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 8 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=112526 responseStatus[0;m=201 Created token[0;m=6NQEo6dr | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=34161 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=112526 responseStatus[0;m=201 Created token[0;m=6NQEo6dr | |
| section_end:1640091279:upload_artifacts_on_failure [0Ksection_start:1640091279:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1640091280:cleanup_file_variables [0K[31;1mERROR: Job failed: exit status 1 | |
| [0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1640088592:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1640088592:resolve_secrets [0Ksection_start:1640088592:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor834040280, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 30092, build ref 27bd6c88db277042842987f0c6748ae9ba9e57f3, job ID 112524 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112524 | |
| A slurm job will be created with name GL_J112524_PROD_P112_CP3_C3 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 140972 | |
| job state: R | |
| section_end:1640088593:prepare_executor [0Ksection_start:1640088593:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i4n32 via bbpv1.epfl.ch... | |
| section_end:1640088598:prepare_script [0Ksection_start:1640088598:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1640088599:get_sources [0Ksection_start:1640088599:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:intel (112520)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=289342 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=112520 responseStatus[0;m=200 OK token[0;m=jknnCyrk | |
| section_end:1640088601:download_artifacts [0Ksection_start:1640088601:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i4n32 | |
| Build name: Linux-icpc | |
| Create new tag: 20211221-1217 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112520/_/spack-build/spack-stage-coreneuron-develop-aevgkbdozl3htdtjhrd5w65n3c6mb2jh/spack-build-aevgkbd | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| Start 17: reporting_1 | |
| 1/17 Test #1: cmd_interface_test ................. Passed 4.15 sec | |
| 2/17 Test #3: alignment_test ..................... Passed 4.48 sec | |
| Start 7: ring_binqueue_TEST | |
| 3/17 Test #2: interleave_info_constructor_test ... Passed 4.59 sec | |
| 4/17 Test #4: queuing_test ....................... Passed 5.54 sec | |
| Start 8: ring_multisend_TEST | |
| 5/17 Test #5: lfp_test ........................... Passed 5.81 sec | |
| 6/17 Test #17: reporting_1 ........................ Passed 10.25 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 7/17 Test #6: ring_TEST .......................... Passed 11.55 sec | |
| Start 10: ring_permute1_TEST | |
| 8/17 Test #8: ring_multisend_TEST ................ Passed 8.12 sec | |
| Start 11: ring_permute2_TEST | |
| 9/17 Test #7: ring_binqueue_TEST ................. Passed 9.50 sec | |
| Start 12: ring_gap_TEST | |
| 10/17 Test #9: ring_spike_buffer_TEST ............. Passed 7.83 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 11/17 Test #10: ring_permute1_TEST ................. Passed 7.43 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 12/17 Test #12: ring_gap_TEST ...................... Passed 9.81 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/17 Test #11: ring_permute2_TEST ................. Passed 10.07 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 14/17 Test #13: ring_gap_binqueue_TEST ............. Passed 6.68 sec | |
| 15/17 Test #14: ring_gap_multisend_TEST ............ Passed 9.38 sec | |
| 16/17 Test #15: ring_gap_permute1_TEST ............. Passed 5.30 sec | |
| 17/17 Test #16: ring_gap_permute2_TEST ............. Passed 6.10 sec | |
| 100% tests passed, 0 tests failed out of 17 | |
| Total Test time (real) = 30.21 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.8.3 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1640089105:step_script [0Ksection_start:1640089105:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=8466 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=112524 responseStatus[0;m=201 Created token[0;m=Bw4keC93 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=8513 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=112524 responseStatus[0;m=201 Created token[0;m=Bw4keC93 | |
| section_end:1640089106:upload_artifacts_on_success [0Ksection_start:1640089106:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1640089107:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1640090998:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1640090998:resolve_secrets [0Ksection_start:1640090998:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor664336300, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 30092, build ref 27bd6c88db277042842987f0c6748ae9ba9e57f3, job ID 112525 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112525 | |
| A slurm job will be created with name GL_J112525_PROD_P112_CP2_C1 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 141072 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| section_end:1640091001:prepare_executor [0Ksection_start:1640091001:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch... | |
| section_end:1640091003:prepare_script [0Ksection_start:1640091003:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1640091004:get_sources [0Ksection_start:1640091004:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron+nmodl:gpu (112521)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=29858 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=112521 responseStatus[0;m=200 OK token[0;m=NRyyu1VN | |
| section_end:1640091005:download_artifacts [0Ksection_start:1640091005:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i4n32 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20211221-1250 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112521/_/spack-build/spack-stage-coreneuron-develop-zlwgeoedcsxjuxmsxmqszgt6asxykrym/spack-build-zlwgeoe | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| 1/18 Test #2: interleave_info_constructor_test ....... Passed 1.86 sec | |
| Start 7: ring_binqueue_TEST | |
| 2/18 Test #3: alignment_test ......................... Passed 2.04 sec | |
| 3/18 Test #1: cmd_interface_test ..................... Passed 2.23 sec | |
| Start 8: ring_multisend_TEST | |
| 4/18 Test #4: queuing_test ........................... Passed 2.48 sec | |
| 5/18 Test #5: lfp_test ............................... Passed 2.68 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 6/18 Test #6: ring_TEST .............................. Passed 5.01 sec | |
| Start 10: ring_permute1_TEST | |
| 7/18 Test #7: ring_binqueue_TEST ..................... Passed 45.89 sec | |
| Start 11: ring_permute2_TEST | |
| 8/18 Test #9: ring_spike_buffer_TEST ................. Passed 45.40 sec | |
| Start 12: ring_gap_TEST | |
| 9/18 Test #10: ring_permute1_TEST ..................... Passed 43.21 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 10/18 Test #8: ring_multisend_TEST .................... Passed 46.20 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 11/18 Test #11: ring_permute2_TEST ..................... Passed 18.03 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 12/18 Test #12: ring_gap_TEST ..........................***Timeout 1500.05 sec | |
| num_mpi=8 | |
| Info : 4 GPUs shared by 8 ranks per node | |
| Duke, Yale, and the BlueBrain Project -- Copyright 1984-2020 | |
| Version : 1.0 27bd6c88 (2021-12-21 11:30:07 +0100) | |
| Additional mechanisms from files | |
| exp2syn.mod expsyn.mod halfgap.mod hh.mod netstim.mod passive.mod pattern.mod stim.mod svclmp.mod | |
| Memory (MBs) : After mk_mech : Max 229.4258, Min 229.2344, Avg 229.3394 | |
| GPU Memory (MBs) : Used = 3174.000000, Free = 29336.500000, Total = 32510.500000 | |
| Memory (MBs) : After MPI_Init : Max 229.4258, Min 229.2344, Avg 229.3394 | |
| GPU Memory (MBs) : Used = 3174.000000, Free = 29336.500000, Total = 32510.500000 | |
| Memory (MBs) : Before nrn_setup : Max 229.6602, Min 229.5781, Avg 229.5884 | |
| GPU Memory (MBs) : Used = 3174.000000, Free = 29336.500000, Total = 32510.500000 | |
| WARNING : GPU execution requires --cell-permute type 1 or 2. Setting it to 1. | |
| Model uses gap junctions | |
| Info : The number of input datasets are less than ranks, some ranks will be idle! | |
| Setup Done : 0.66 seconds | |
| Model size : 93.06 kB | |
| Memory (MBs) : After nrn_setup : Max 229.6797, Min 229.5977, Avg 229.6079 | |
| GPU Memory (MBs) : Used = 3178.000000, Free = 29332.500000, Total = 32510.500000 | |
| GENERAL PARAMETERS | |
| --mpi=true | |
| --mpi-lib= | |
| --gpu=true | |
| --dt=0.025 | |
| --tstop=100 | |
| GPU | |
| --nwarp=0 | |
| --cell-permute=0 | |
| --cuda-interface=false | |
| INPUT PARAMETERS | |
| --voltage=-65 | |
| --seed=-1 | |
| --datpath=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112521/_/spack-build/spack-stage-coreneuron-develop-zlwgeoedcsxjuxmsxmqszgt6asxykrym/spack-src/tests/integration/ring_gap | |
| --filesdat=files.dat | |
| --pattern= | |
| --report-conf= | |
| --restore= | |
| PARALLEL COMPUTATION PARAMETERS | |
| --threading=false | |
| --skip_mpi_finalize=false | |
| SPIKE EXCHANGE | |
| --ms_phases=2 | |
| --ms_subintervals=2 | |
| --multisend=false | |
| --spk_compress=0 | |
| --binqueue=false | |
| CONFIGURATION | |
| --spikebuf=100000 | |
| --prcellgid=-1 | |
| --forwardskip=0 | |
| --celsius=6.3 | |
| --mindelay=10 | |
| --report-buffer-size=4 | |
| OUTPUT PARAMETERS | |
| --dt_io=0.1 | |
| --outpath=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112521/_/spack-build/spack-stage-coreneuron-develop-zlwgeoedcsxjuxmsxmqszgt6asxykrym/spack-build-zlwgeoe/tests/integration/ring_gap | |
| --checkpoint= | |
| Start time (t) = 0 | |
| Memory (MBs) : After mk_spikevec_buffer : Max 229.6797, Min 229.5977, Avg 229.6079 | |
| GPU Memory (MBs) : Used = 3178.000000, Free = 29332.500000, Total = 32510.500000 | |
| Memory (MBs) : After nrn_finitialize : Max 296.2773, Min 229.7695, Avg 246.3872 | |
| GPU Memory (MBs) : Used = 3182.000000, Free = 29328.500000, Total = 32510.500000 | |
| psolve | | t: 0.00 ETA: 0h00m00s psolve | | t: 0.75 ETA: 0h11m01s psolve | | t: 1.75 ETA: 0h10m17s psolve |= | t: 2.63 ETA: 0h09m53s psolve |== | t: 3.63 ETA: 0h09m18s psolve |== | t: 4.63 ETA: 0h08m56s psolve |=== | t: 5.38 ETA: 0h09m05s psolve |=== | t: 6.25 ETA: 0h09m00s psolve |=== | t: 6.75 ETA: 0h09m26s psolve |==== | t: 7.25 ETA: 0h09m48s psolve |==== | t: 7.75 ETA: 0h10m18s psolve |==== | t: 8.25 ETA: 0h10m45s psolve |==== | t: 8.75 ETA: 0h11m07s psolve |===== | t: 9.25 ETA: 0h11m26s psolve |===== | t: 9.62 ETA: 0h11m44s psolve |===== | t: 10.12 ETA: 0h11m59s psolve |===== | t: 10.50 ETA: 0h12m21s psolve |====== | t: 10.75 ETA: 0h12m43s psolve |====== | t: 11.12 ETA: 0h13m02s psolve |====== | t: 11.50 ETA: 0h13m20s psolve |====== | t: 12.12 ETA: 0h13m09s psolve |======= | t: 12.50 ETA: 0h13m18s psolve |======= | t: 13.50 ETA: 0h12m48s psolve |======= | t: 13.87 ETA: 0h13m02s psolve |======== | t: 14.25 ETA: 0h13m14s psolve |======== | t: 14.62 ETA: 0h13m25s psolve |======== | t: 15.00 ETA: 0h13m41s psolve |======== | t: 15.37 ETA: 0h13m51s psolve |======== | t: 15.75 ETA: 0h13m54s psolve |========= | t: 16.00 ETA: 0h14m05s psolve |========= | t: 16.37 ETA: 0h14m12s psolve |========= | t: 16.75 ETA: 0h14m24s psolve |========= | t: 17.12 ETA: 0h14m31s psolve |========= | t: 17.50 ETA: 0h14m36s psolve |========== | t: 17.87 ETA: 0h14m42s psolve |========== | t: 18.25 ETA: 0h14m46s psolve |========== | t: 18.62 ETA: 0h14m46s psolve |========== | t: 19.00 ETA: 0h14m51s psolve |=========== | t: 19.37 ETA: 0h14m54s psolve |=========== | t: 19.75 ETA: 0h14m57s psolve |=========== | t: 20.12 ETA: 0h14m56s psolve |=========== | t: 20.50 ETA: 0h14m59s psolve |=========== | t: 20.87 ETA: 0h15m02s psolve |============ | t: 21.25 ETA: 0h15m00s psolve |============ | t: 21.62 ETA: 0h15m02s psolve |============ | t: 22.00 ETA: 0h15m04s psolve |============ | t: 22.37 ETA: 0h15m02s psolve |============ | t: 22.75 ETA: 0h15m06s psolve |============= | t: 23.12 ETA: 0h15m04s psolve |============= | t: 23.37 ETA: 0h15m08s psolve |============= | t: 23.75 ETA: 0h15m08s psolve |============= | t: 24.12 ETA: 0h15m05s psolve |============= | t: 24.50 ETA: 0h15m06s psolve |============== | t: 24.87 ETA: 0h15m09s psolve |============== | t: 25.25 ETA: 0h15m08s psolve |============== | t: 25.62 ETA: 0h15m08s psolve |============== | t: 26.00 ETA: 0h15m07s psolve |=============== | t: 26.37 ETA: 0h15m07s psolve |=============== | t: 26.75 ETA: 0h15m06s psolve |=============== | t: 27.12 ETA: 0h15m05s psolve |=============== | t: 27.50 ETA: 0h15m04s psolve |=============== | t: 27.87 ETA: 0h15m03s psolve |================ | t: 28.25 ETA: 0h15m01s psolve |================ | t: 28.62 ETA: 0h15m00s psolve |================ | t: 29.00 ETA: 0h14m56s psolve |================ | t: 29.25 ETA: 0h14m57s psolve |================ | t: 29.62 ETA: 0h14m55s psolve |================= | t: 30.00 ETA: 0h14m53s psolve |================= | t: 30.37 ETA: 0h14m51s psolve |================= | t: 30.75 ETA: 0h14m49s psolve |================= | t: 31.12 ETA: 0h14m47s psolve |================= | t: 31.50 ETA: 0h14m45s psolve |================== | t: 31.87 ETA: 0h14m42s psolve |================== | t: 32.25 ETA: 0h14m40s psolve |================== | t: 32.62 ETA: 0h14m37s psolve |================== | t: 32.87 ETA: 0h14m37s psolve |================== | t: 33.25 ETA: 0h14m33s psolve |=================== | t: 33.62 ETA: 0h14m30s psolve |=================== | t: 34.00 ETA: 0h14m27s psolve |=================== | t: 34.37 ETA: 0h14m24s psolve |=================== | t: 35.00 ETA: 0h14m12s psolve |==================== | t: 35.37 ETA: 0h14m09s psolve |==================== | t: 35.75 ETA: 0h14m08s psolve |==================== | t: 36.12 ETA: 0h14m05s psolve |==================== | t: 36.50 ETA: 0h14m00s psolve |==================== | t: 36.75 ETA: 0h13m59s psolve |===================== | t: 37.12 ETA: 0h13m54s psolve |===================== | t: 37.50 ETA: 0h13m51s psolve |===================== | t: 37.88 ETA: 0h13m49s psolve |===================== | t: 38.25 ETA: 0h13m44s psolve |====================== | t: 38.63 ETA: 0h13m41s psolve |====================== | t: 39.00 ETA: 0h13m38s psolve |====================== | t: 39.38 ETA: 0h13m34s psolve |====================== | t: 39.75 ETA: 0h13m30s psolve |====================== | t: 40.13 ETA: 0h13m27s psolve |======================= | t: 40.50 ETA: 0h13m23s psolve |======================= | t: 40.75 ETA: 0h13m22s psolve |======================= | t: 41.13 ETA: 0h13m18s psolve |======================= | t: 41.50 ETA: 0h13m15s psolve |======================= | t: 41.88 ETA: 0h13m09s psolve |======================== | t: 42.25 ETA: 0h13m05s psolve |======================== | t: 42.63 ETA: 0h13m02s psolve |======================== | t: 42.88 ETA: 0h13m00s psolve |======================== | t: 43.25 ETA: 0h12m55s psolve |======================== | t: 43.50 ETA: 0h12m54s psolve |========================= | t: 43.88 ETA: 0h12m48s psolve |========================= | t: 44.13 ETA: 0h12m47s psolve |========================= | t: 44.50 ETA: 0h12m43s psolve |========================= | t: 44.88 ETA: 0h12m39s psolve |========================= | t: 45.25 ETA: 0h12m35s psolve |========================== | t: 45.63 ETA: 0h12m30s psolve |========================== | t: 46.00 ETA: 0h12m26s psolve |========================== | t: 46.38 ETA: 0h12m22s psolve |========================== | t: 46.75 ETA: 0h12m18s psolve |========================== | t: 47.13 ETA: 0h12m13s psolve |=========================== | t: 47.38 ETA: 0h12m12s psolve |=========================== | t: 47.75 ETA: 0h12m07s psolve |=========================== | t: 48.13 ETA: 0h12m03s psolve |=========================== | t: 48.50 ETA: 0h11m57s psolve |=========================== | t: 48.88 ETA: 0h11m53s psolve |============================ | t: 49.25 ETA: 0h11m49s psolve |============================ | t: 49.63 ETA: 0h11m46s psolve |============================ | t: 50.00 ETA: 0h11m41s psolve |============================ | t: 50.25 ETA: 0h11m38s psolve |============================ | t: 50.63 ETA: 0h11m34s psolve |============================= | t: 51.00 ETA: 0h11m28s psolve |============================= | t: 51.38 ETA: 0h11m24s psolve |============================= | t: 51.75 ETA: 0h11m19s psolve |============================= | t: 52.13 ETA: 0h11m14s psolve |============================= | t: 52.50 ETA: 0h11m08s psolve |============================== | t: 52.88 ETA: 0h11m03s psolve |============================== | t: 53.25 ETA: 0h10m59s psolve |============================== | t: 53.63 ETA: 0h10m54s psolve |============================== | t: 54.00 ETA: 0h10m49s psolve |============================== | t: 54.38 ETA: 0h10m44s psolve |=============================== | t: 54.75 ETA: 0h10m38s psolve |=============================== | t: 55.13 ETA: 0h10m34s psolve |=============================== | t: 55.50 ETA: 0h10m29s psolve |=============================== | t: 55.88 ETA: 0h10m24s psolve |================================ | t: 56.25 ETA: 0h10m19s psolve |================================ | t: 56.63 ETA: 0h10m15s psolve |================================ | t: 57.00 ETA: 0h10m10s psolve |================================ | t: 57.38 ETA: 0h10m05s psolve |================================ | t: 57.63 ETA: 0h10m02s psolve |================================= | t: 58.00 ETA: 0h09m58s psolve |================================= | t: 58.38 ETA: 0h09m53s psolve |================================= | t: 58.75 ETA: 0h09m48s psolve |================================= | t: 59.13 ETA: 0h09m42s psolve |================================= | t: 59.50 ETA: 0h09m37s psolve |================================== | t: 59.75 ETA: 0h09m35s psolve |================================== | t: 60.13 ETA: 0h09m30s psolve |================================== | t: 60.38 ETA: 0h09m27s psolve |================================== | t: 60.75 ETA: 0h09m22s psolve |================================== | t: 61.13 ETA: 0h09m17s psolve |=================================== | t: 61.50 ETA: 0h09m12s psolve |=================================== | t: 61.88 ETA: 0h09m07s psolve |=================================== | t: 62.13 ETA: 0h09m04s psolve |=================================== | t: 62.50 ETA: 0h08m59s psolve |=================================== | t: 63.00 ETA: 0h08m50s psolve |==================================== | t: 63.38 ETA: 0h08m45s psolve |==================================== | t: 63.75 ETA: 0h08m40s psolve |==================================== | t: 64.13 ETA: 0h08m35s psolve |==================================== | t: 64.50 ETA: 0h08m30s psolve |==================================== | t: 64.88 ETA: 0h08m25s psolve |===================================== | t: 65.25 ETA: 0h08m20s psolve |===================================== | t: 65.63 ETA: 0h08m15s psolve |===================================== | t: 66.00 ETA: 0h08m09s psolve |===================================== | t: 66.38 ETA: 0h08m04s psolve |===================================== | t: 66.63 ETA: 0h08m01s psolve |====================================== | t: 67.00 ETA: 0h07m56s psolve |====================================== | t: 67.38 ETA: 0h07m51s psolve |====================================== | t: 68.13 ETA: 0h07m38s psolve |====================================== | t: 68.38 ETA: 0h07m35s psolve |======================================= | t: 68.75 ETA: 0h07m30s psolve |======================================= | t: 69.13 ETA: 0h07m24s psolve |======================================= | t: 69.50 ETA: 0h07m19s psolve |======================================= | t: 69.88 ETA: 0h07m14s psolve |======================================== | t: 70.25 ETA: 0h07m08s psolve |======================================== | t: 70.50 ETA: 0h07m05s psolve |======================================== | t: 70.88 ETA: 0h07m00s psolve |======================================== | t: 71.13 ETA: 0h06m57s psolve |======================================== | t: 71.50 ETA: 0h06m52s psolve |======================================== | t: 71.88 ETA: 0h06m46s psolve |========================================= | t: 72.38 ETA: 0h06m39s psolve |========================================= | t: 72.75 ETA: 0h06m34s psolve |========================================= | t: 73.13 ETA: 0h06m28s psolve |========================================= | t: 73.50 ETA: 0h06m23s psolve |========================================== | t: 73.88 ETA: 0h06m18s psolve |========================================== | t: 74.25 ETA: 0h06m13s psolve |========================================== | t: 74.63 ETA: 0h06m07s psolve |========================================== | t: 75.00 ETA: 0h06m02s psolve |========================================== | t: 75.25 ETA: 0h05m59s psolve |=========================================== | t: 75.63 ETA: 0h05m53s psolve |=========================================== | t: 76.00 ETA: 0h05m48s psolve |=========================================== | t: 76.38 ETA: 0h05m43s psolve |=========================================== | t: 76.75 ETA: 0h05m37s psolve |=========================================== | t: 77.13 ETA: 0h05m32s psolve |============================================ | t: 77.38 ETA: 0h05m28s psolve |============================================ | t: 77.88 ETA: 0h05m21s psolve |============================================ | t: 78.25 ETA: 0h05m15s psolve |============================================ | t: 78.63 ETA: 0h05m10s psolve |============================================= | t: 79.00 ETA: 0h05m05s psolve |============================================= | t: 79.38 ETA: 0h04m59s psolve |============================================= | t: 79.75 ETA: 0h04m54s psolve |============================================= | t: 80.13 ETA: 0h04m49s psolve |============================================= | t: 80.50 ETA: 0h04m43s psolve |============================================== | t: 80.88 ETA: 0h04m38s psolve |============================================== | t: 81.25 ETA: 0h04m33s psolve |============================================== | t: 81.75 ETA: 0h04m25s psolve |============================================== | t: 82.13 ETA: 0h04m20s psolve |=============================================== | t: 82.50 ETA: 0h04m14s psolve |=============================================== | t: 82.88 ETA: 0h04m09s psolve |=============================================== | t: 83.25 ETA: 0h04m04s psolve |=============================================== | t: 83.63 ETA: 0h03m58s psolve |=============================================== | t: 84.00 ETA: 0h03m53s psolve |================================================ | t: 84.38 ETA: 0h03m47s psolve |================================================ | t: 84.63 ETA: 0h03m44s psolve |================================================ | t: 85.00 ETA: 0h03m39s psolve |================================================ | t: 85.38 ETA: 0h03m33s psolve |================================================ | t: 85.75 ETA: 0h03m28s psolve |================================================= | t: 86.25 ETA: 0h03m20s psolve |================================================= | t: 86.50 ETA: 0h03m17s psolve |================================================= | t: 86.88 ETA: 0h03m11s psolve |================================================= | t: 87.25 ETA: 0h03m06s psolve |================================================= | t: 87.63 ETA: 0h03m00s psolve |================================================== | t: 88.00 ETA: 0h02m55s psolve |================================================== | t: 88.25 ETA: 0h02m52s psolve |================================================== | t: 88.63 ETA: 0h02m46s psolve |================================================== | t: 89.00 ETA: 0h02m41s psolve |================================================== | t: 89.38 ETA: 0h02m35s psolve |=================================================== | t: 89.75 ETA: 0h02m30s psolve |=================================================== | t: 90.13 ETA: 0h02m24s psolve |=================================================== | t: 90.50 ETA: 0h02m19s psolve |=================================================== | t: 90.88 ETA: 0h02m13s psolve |==================================================== | t: 91.25 ETA: 0h02m08s psolve |==================================================== | t: 91.63 ETA: 0h02m02s psolve |==================================================== | t: 92.00 ETA: 0h01m57s psolve |==================================================== | t: 92.38 ETA: 0h01m52s psolve |==================================================== | t: 92.75 ETA: 0h01m46s psolve |===================================================== | t: 93.13 ETA: 0h01m41s psolve |===================================================== | t: 93.50 ETA: 0h01m35s psolve |===================================================== | t: 93.88 ETA: 0h01m30s psolve |===================================================== | t: 94.25 ETA: 0h01m24s psolve |===================================================== | t: 94.63 ETA: 0h01m19s psolve |====================================================== | t: 95.00 ETA: 0h01m13s psolve |====================================================== | t: 95.75 ETA: 0h01m02s psolve |====================================================== | t: 96.13 ETA: 0h00m56s psolve |======================================================= | t: 96.50 ETA: 0h00m51s psolve |======================================================= | t: 96.88 ETA: 0h00m45s psolve |======================================================= | t: 97.13 ETA: 0h00m42s psolve |======================================================= | t: 97.50 ETA: 0h00m36s psolve |======================================================= | t: 97.88 ETA: 0h00m31s psolve |======================================================== | t: 98.50 ETA: 0h00m21s psolve |======================================================== | t: 98.88 ETA: 0h00m16s psolve |======================================================== | t: 99.25 ETA: 0h00m11s psolve |======================================================== | t: 99.50 ETA: 0h00m07s psolve |======================================================== | t: 99.88 ETA: 0h00m01s psolve |=========================================================| t: 100.00 ETA: 0h24m29s | |
| Solver Time : 1469.04 | |
| Simulation Statistics | |
| Number of cells: 20 | |
| Number of compartments: 804 | |
| Number of presyns: 21 | |
| Number of input presyns: 0 | |
| Number of synapses: 1 | |
| Number of point processes: 81 | |
| Number of transfer sources: 40 | |
| Number of transfer targets: 40 | |
| Number of spikes: 20 | |
| Number of spikes with non negative gid-s: 20 | |
| Start 16: ring_gap_permute2_TEST | |
| 13/18 Test #13: ring_gap_binqueue_TEST .................***Timeout 1500.08 sec | |
| num_mpi=8 | |
| Info : 4 GPUs shared by 8 ranks per node | |
| Duke, Yale, and the BlueBrain Project -- Copyright 1984-2020 | |
| Version : 1.0 27bd6c88 (2021-12-21 11:30:07 +0100) | |
| Additional mechanisms from files | |
| exp2syn.mod expsyn.mod halfgap.mod hh.mod netstim.mod passive.mod pattern.mod stim.mod svclmp.mod | |
| Memory (MBs) : After mk_mech : Max 229.4883, Min 229.2305, Avg 229.3467 | |
| GPU Memory (MBs) : Used = 2162.000000, Free = 30348.500000, Total = 32510.500000 | |
| Memory (MBs) : After MPI_Init : Max 229.4883, Min 229.2305, Avg 229.3467 | |
| GPU Memory (MBs) : Used = 2162.000000, Free = 30348.500000, Total = 32510.500000 | |
| Memory (MBs) : Before nrn_setup : Max 229.6562, Min 229.5781, Avg 229.5879 | |
| GPU Memory (MBs) : Used = 2162.000000, Free = 30348.500000, Total = 32510.500000 | |
| WARNING : GPU execution requires --cell-permute type 1 or 2. Setting it to 1. | |
| Model uses gap junctions | |
| Info : The number of input datasets are less than ranks, some ranks will be idle! | |
| Setup Done : 0.01 seconds | |
| Model size : 93.06 kB | |
| Memory (MBs) : After nrn_setup : Max 229.6758, Min 229.5977, Avg 229.6074 | |
| GPU Memory (MBs) : Used = 2162.000000, Free = 30348.500000, Total = 32510.500000 | |
| GENERAL PARAMETERS | |
| --mpi=true | |
| --mpi-lib= | |
| --gpu=true | |
| --dt=0.025 | |
| --tstop=100 | |
| GPU | |
| --nwarp=0 | |
| --cell-permute=0 | |
| --cuda-interface=false | |
| INPUT PARAMETERS | |
| --voltage=-65 | |
| --seed=-1 | |
| --datpath=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112521/_/spack-build/spack-stage-coreneuron-develop-zlwgeoedcsxjuxmsxmqszgt6asxykrym/spack-src/tests/integration/ring_gap | |
| --filesdat=files.dat | |
| --pattern= | |
| --report-conf= | |
| --restore= | |
| PARALLEL COMPUTATION PARAMETERS | |
| --threading=false | |
| --skip_mpi_finalize=false | |
| SPIKE EXCHANGE | |
| --ms_phases=2 | |
| --ms_subintervals=2 | |
| --multisend=false | |
| --spk_compress=0 | |
| --binqueue=true | |
| CONFIGURATION | |
| --spikebuf=100000 | |
| --prcellgid=-1 | |
| --forwardskip=0 | |
| --celsius=6.3 | |
| --mindelay=10 | |
| --report-buffer-size=4 | |
| OUTPUT PARAMETERS | |
| --dt_io=0.1 | |
| --outpath=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112521/_/spack-build/spack-stage-coreneuron-develop-zlwgeoedcsxjuxmsxmqszgt6asxykrym/spack-build-zlwgeoe/tests/integration/ring_gap_binqueue | |
| --checkpoint= | |
| Start time (t) = 0 | |
| Memory (MBs) : After mk_spikevec_buffer : Max 229.6758, Min 229.5977, Avg 229.6074 | |
| GPU Memory (MBs) : Used = 2162.000000, Free = 30348.500000, Total = 32510.500000 | |
| Memory (MBs) : After nrn_finitialize : Max 296.3008, Min 229.7695, Avg 246.3970 | |
| GPU Memory (MBs) : Used = 2166.000000, Free = 30344.500000, Total = 32510.500000 | |
| Start 17: ring_permute2_cudaInterface_TEST | |
| 14/18 Test #14: ring_gap_multisend_TEST ................***Timeout 1500.04 sec | |
| num_mpi=8 | |
| Info : 4 GPUs shared by 8 ranks per node | |
| Duke, Yale, and the BlueBrain Project -- Copyright 1984-2020 | |
| Version : 1.0 27bd6c88 (2021-12-21 11:30:07 +0100) | |
| Additional mechanisms from files | |
| exp2syn.mod expsyn.mod halfgap.mod hh.mod netstim.mod passive.mod pattern.mod stim.mod svclmp.mod | |
| Memory (MBs) : After mk_mech : Max 229.4883, Min 229.2344, Avg 229.3472 | |
| GPU Memory (MBs) : Used = 3174.000000, Free = 29336.500000, Total = 32510.500000 | |
| Memory (MBs) : After MPI_Init : Max 229.4883, Min 229.2344, Avg 229.3472 | |
| GPU Memory (MBs) : Used = 3174.000000, Free = 29336.500000, Total = 32510.500000 | |
| Memory (MBs) : Before nrn_setup : Max 229.6562, Min 229.5781, Avg 229.5879 | |
| GPU Memory (MBs) : Used = 3174.000000, Free = 29336.500000, Total = 32510.500000 | |
| WARNING : GPU execution requires --cell-permute type 1 or 2. Setting it to 1. | |
| Model uses gap junctions | |
| Info : The number of input datasets are less than ranks, some ranks will be idle! | |
| Setup Done : 1.33 seconds | |
| Model size : 93.34 kB | |
| Memory (MBs) : After nrn_setup : Max 229.8477, Min 229.5977, Avg 229.6504 | |
| GPU Memory (MBs) : Used = 3174.000000, Free = 29336.500000, Total = 32510.500000 | |
| GENERAL PARAMETERS | |
| --mpi=true | |
| --mpi-lib= | |
| --gpu=true | |
| --dt=0.025 | |
| --tstop=100 | |
| GPU | |
| --nwarp=0 | |
| --cell-permute=0 | |
| --cuda-interface=false | |
| INPUT PARAMETERS | |
| --voltage=-65 | |
| --seed=-1 | |
| --datpath=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112521/_/spack-build/spack-stage-coreneuron-develop-zlwgeoedcsxjuxmsxmqszgt6asxykrym/spack-src/tests/integration/ring_gap | |
| --filesdat=files.dat | |
| --pattern= | |
| --report-conf= | |
| --restore= | |
| PARALLEL COMPUTATION PARAMETERS | |
| --threading=false | |
| --skip_mpi_finalize=false | |
| SPIKE EXCHANGE | |
| --ms_phases=2 | |
| --ms_subintervals=2 | |
| --multisend=true | |
| --spk_compress=0 | |
| --binqueue=false | |
| CONFIGURATION | |
| --spikebuf=100000 | |
| --prcellgid=-1 | |
| --forwardskip=0 | |
| --celsius=6.3 | |
| --mindelay=10 | |
| --report-buffer-size=4 | |
| OUTPUT PARAMETERS | |
| --dt_io=0.1 | |
| --outpath=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112521/_/spack-build/spack-stage-coreneuron-develop-zlwgeoedcsxjuxmsxmqszgt6asxykrym/spack-build-zlwgeoe/tests/integration/ring_gap_multisend | |
| --checkpoint= | |
| Start time (t) = 0 | |
| Memory (MBs) : After mk_spikevec_buffer : Max 229.8477, Min 229.5977, Avg 229.6504 | |
| GPU Memory (MBs) : Used = 3174.000000, Free = 29336.500000, Total = 32510.500000 | |
| Memory (MBs) : After nrn_finitialize : Max 296.3008, Min 229.7656, Avg 246.3848 | |
| GPU Memory (MBs) : Used = 3182.000000, Free = 29328.500000, Total = 32510.500000 | |
| Start 18: ring_gap_permute2_cudaInterface_TEST | |
| 15/18 Test #15: ring_gap_permute1_TEST .................***Timeout 1500.05 sec | |
| num_mpi=8 | |
| Info : 4 GPUs shared by 8 ranks per node | |
| Duke, Yale, and the BlueBrain Project -- Copyright 1984-2020 | |
| Version : 1.0 27bd6c88 (2021-12-21 11:30:07 +0100) | |
| Additional mechanisms from files | |
| exp2syn.mod expsyn.mod halfgap.mod hh.mod netstim.mod passive.mod pattern.mod stim.mod svclmp.mod | |
| Memory (MBs) : After mk_mech : Max 229.4883, Min 229.2344, Avg 229.3472 | |
| GPU Memory (MBs) : Used = 3792.000000, Free = 28718.500000, Total = 32510.500000 | |
| Memory (MBs) : After MPI_Init : Max 229.4883, Min 229.2344, Avg 229.3472 | |
| GPU Memory (MBs) : Used = 3792.000000, Free = 28718.500000, Total = 32510.500000 | |
| Memory (MBs) : Before nrn_setup : Max 229.6562, Min 229.5781, Avg 229.5879 | |
| GPU Memory (MBs) : Used = 3792.000000, Free = 28718.500000, Total = 32510.500000 | |
| Model uses gap junctions | |
| Info : The number of input datasets are less than ranks, some ranks will be idle! | |
| Setup Done : 1.50 seconds | |
| Model size : 93.06 kB | |
| Memory (MBs) : After nrn_setup : Max 229.6758, Min 229.5977, Avg 229.6074 | |
| GPU Memory (MBs) : Used = 3792.000000, Free = 28718.500000, Total = 32510.500000 | |
| GENERAL PARAMETERS | |
| --mpi=true | |
| --mpi-lib= | |
| --gpu=true | |
| --dt=0.025 | |
| --tstop=100 | |
| GPU | |
| --nwarp=0 | |
| --cell-permute=1 | |
| --cuda-interface=false | |
| INPUT PARAMETERS | |
| --voltage=-65 | |
| --seed=-1 | |
| --datpath=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112521/_/spack-build/spack-stage-coreneuron-develop-zlwgeoedcsxjuxmsxmqszgt6asxykrym/spack-src/tests/integration/ring_gap | |
| --filesdat=files.dat | |
| --pattern= | |
| --report-conf= | |
| --restore= | |
| PARALLEL COMPUTATION PARAMETERS | |
| --threading=false | |
| --skip_mpi_finalize=false | |
| SPIKE EXCHANGE | |
| --ms_phases=2 | |
| --ms_subintervals=2 | |
| --multisend=false | |
| --spk_compress=0 | |
| --binqueue=false | |
| CONFIGURATION | |
| --spikebuf=100000 | |
| --prcellgid=-1 | |
| --forwardskip=0 | |
| --celsius=6.3 | |
| --mindelay=10 | |
| --report-buffer-size=4 | |
| OUTPUT PARAMETERS | |
| --dt_io=0.1 | |
| --outpath=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112521/_/spack-build/spack-stage-coreneuron-develop-zlwgeoedcsxjuxmsxmqszgt6asxykrym/spack-build-zlwgeoe/tests/integration/ring_gap_permute1 | |
| --checkpoint= | |
| Start time (t) = 0 | |
| Memory (MBs) : After mk_spikevec_buffer : Max 229.6758, Min 229.5977, Avg 229.6074 | |
| GPU Memory (MBs) : Used = 3792.000000, Free = 28718.500000, Total = 32510.500000 | |
| Memory (MBs) : After nrn_finitialize : Max 296.2422, Min 229.7695, Avg 246.3823 | |
| GPU Memory (MBs) : Used = 3796.000000, Free = 28714.500000, Total = 32510.500000 | |
| 16/18 Test #16: ring_gap_permute2_TEST ................. Passed 63.63 sec | |
| 17/18 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 69.48 sec | |
| 18/18 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 69.67 sec | |
| 78% tests passed, 4 tests failed out of 18 | |
| Total Test time (real) = 1618.17 sec | |
| The following tests FAILED: | |
| 12 - ring_gap_TEST (Timeout) | |
| 13 - ring_gap_binqueue_TEST (Timeout) | |
| 14 - ring_gap_multisend_TEST (Timeout) | |
| 15 - ring_gap_permute1_TEST (Timeout) | |
| Errors while running CTest | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.8.3 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| srun: error: ldir01u09: task 0: Exited with exit code 1 | |
| section_end:1640092658:step_script [0Ksection_start:1640092658:upload_artifacts_on_failure [0K[0K[36;1mUploading artifacts for failed job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=51370 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 8 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=112525 responseStatus[0;m=201 Created token[0;m=zy2qiXqU | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=51401 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=112525 responseStatus[0;m=201 Created token[0;m=zy2qiXqU | |
| section_end:1640092661:upload_artifacts_on_failure [0Ksection_start:1640092661:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1640092662:cleanup_file_variables [0K[31;1mERROR: Job failed: exit status 1 | |
| [0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1640090935:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1640090935:resolve_secrets [0Ksection_start:1640090935:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor545892444, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 30092, build ref 27bd6c88db277042842987f0c6748ae9ba9e57f3, job ID 112523 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112523 | |
| A slurm job will be created with name GL_J112523_PROD_P112_CP0_C0 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 141070 | |
| job state: R | |
| section_end:1640090936:prepare_executor [0Ksection_start:1640090936:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i5n23 via bbpv1.epfl.ch... | |
| section_end:1640090940:prepare_script [0Ksection_start:1640090940:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1640090941:get_sources [0Ksection_start:1640090941:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron+nmodl:intel (112519)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=253563 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=112519 responseStatus[0;m=200 OK token[0;m=1xDe_fH3 | |
| section_end:1640090942:download_artifacts [0Ksection_start:1640090942:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:46798]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:47096]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:47482]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:47488]: Connection reset by peer | |
| Site: r1i4n32 | |
| Build name: Linux-icpc | |
| Create new tag: 20211221-1250 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112519/_/spack-build/spack-stage-coreneuron-develop-cwjs4t3f4wyl5jax3fb2obxbvjopwgn3/spack-build-cwjs4t3 | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| Start 17: reporting_1 | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:47552]: Connection reset by peer | |
| 1/17 Test #2: interleave_info_constructor_test ... Passed 3.00 sec | |
| 2/17 Test #3: alignment_test ..................... Passed 3.49 sec | |
| Start 7: ring_binqueue_TEST | |
| 3/17 Test #4: queuing_test ....................... Passed 3.83 sec | |
| 4/17 Test #1: cmd_interface_test ................. Passed 4.01 sec | |
| Start 8: ring_multisend_TEST | |
| 5/17 Test #5: lfp_test ........................... Passed 5.09 sec | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:47668]: Connection reset by peer | |
| 6/17 Test #17: reporting_1 ........................ Passed 8.62 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 7/17 Test #6: ring_TEST .......................... Passed 9.43 sec | |
| Start 10: ring_permute1_TEST | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:47762]: Connection reset by peer | |
| 8/17 Test #7: ring_binqueue_TEST ................. Passed 12.03 sec | |
| Start 11: ring_permute2_TEST | |
| 9/17 Test #8: ring_multisend_TEST ................ Passed 11.36 sec | |
| Start 12: ring_gap_TEST | |
| 10/17 Test #9: ring_spike_buffer_TEST ............. Passed 7.61 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 11/17 Test #10: ring_permute1_TEST ................. Passed 7.25 sec | |
| Start 14: ring_gap_multisend_TEST | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:47888]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:48622]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:49620]: Insane message length | |
| 12/17 Test #11: ring_permute2_TEST ................. Passed 37.65 sec | |
| Start 15: ring_gap_permute1_TEST | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_unpack: unpack error | |
| srun: error: Invalid IO init header version | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:37466]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:37482]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:37496]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:37498]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:37518]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:37552]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:37580]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:37594]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:37608]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:37614]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:56068]: Insane message length | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:38078]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:56262]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:38150]: Insane message length | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:56362]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:56364]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:56388]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:56390]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:56394]: Connection reset by peer | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:38440]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:38442]: Connection reset by peer | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:38546]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:38556]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:56830]: Connection reset by peer | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:56838]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:56854]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:56856]: Insane message length | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:38896]: Connection reset by peer | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: io_init_msg_read_from_fd: reading slurm_io_init_msg failed: Connection reset by peer | |
| srun: error: failed reading io init message | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:39208]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:39210]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[10.80.3.19:39212]: Insane message length | |
| 13/17 Test #13: ring_gap_binqueue_TEST ............. Passed 1139.58 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 14/17 Test #14: ring_gap_multisend_TEST ............ Passed 1170.88 sec | |
| 15/17 Test #12: ring_gap_TEST ...................... Passed 1197.51 sec | |
| 16/17 Test #15: ring_gap_permute1_TEST ............. Passed 1168.36 sec | |
| 17/17 Test #16: ring_gap_permute2_TEST ............. Passed 65.82 sec | |
| 100% tests passed, 0 tests failed out of 17 | |
| Total Test time (real) = 1222.15 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.8.3 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1640092243:step_script [0Ksection_start:1640092243:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=297959 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=112523 responseStatus[0;m=201 Created token[0;m=5AxrV9jB | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=297990 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=112523 responseStatus[0;m=201 Created token[0;m=5AxrV9jB | |
| section_end:1640092245:upload_artifacts_on_success [0Ksection_start:1640092245:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1640092246:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1640092102:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1640092102:resolve_secrets [0Ksection_start:1640092102:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor209136998, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 30092, build ref 27bd6c88db277042842987f0c6748ae9ba9e57f3, job ID 112534 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30092/J112534 | |
| A slurm job will be created with name GL_J112534_PROD_P112_CP1_C2 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 141233 | |
| job state: R | |
| section_end:1640092104:prepare_executor [0Ksection_start:1640092104:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch... | |
| section_end:1640092104:prepare_script [0Ksection_start:1640092104:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1640092105:get_sources [0Ksection_start:1640092105:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron:gpu (112530)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=38007 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=112530 responseStatus[0;m=200 OK token[0;m=xdQWnAYo | |
| section_end:1640092106:download_artifacts [0Ksection_start:1640092106:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i4n32 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20211221-1309 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30092/J112530/_/spack-build/spack-stage-neuron-develop-vkogqddlipn6wfzq2o4mkbt36t7uknzy/spack-build-vkogqdd | |
| Start 48: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 52: external_ringtest::coreneuron_gpu_mpi_offline::preparation | |
| Start 59: testcorenrn_bbcore::coreneuron_gpu_offline::preparation | |
| Start 63: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 69: testcorenrn_deriv::coreneuron_gpu_offline::preparation | |
| Start 73: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| 1/162 Test #69: testcorenrn_deriv::coreneuron_gpu_offline::preparation ............. Passed 2.59 sec | |
| Start 87: testcorenrn_patstim::coreneuron_gpu_offline::preparation | |
| 2/162 Test #59: testcorenrn_bbcore::coreneuron_gpu_offline::preparation ............ Passed 2.63 sec | |
| Start 125: testcorenrn_conc::coreneuron_gpu_offline::preparation | |
| 3/162 Test #63: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 2.68 sec | |
| Start 129: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| 4/162 Test #73: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 2.69 sec | |
| Start 135: testcorenrn_kin::coreneuron_gpu_offline::preparation | |
| 5/162 Test #52: external_ringtest::coreneuron_gpu_mpi_offline::preparation ......... Passed 4.28 sec | |
| Start 79: testcorenrn_gf::coreneuron_gpu_offline::preparation | |
| 6/162 Test #48: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 4.35 sec | |
| Start 83: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| 7/162 Test #87: testcorenrn_patstim::coreneuron_gpu_offline::preparation ........... Passed 1.77 sec | |
| Start 139: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| 8/162 Test #125: testcorenrn_conc::coreneuron_gpu_offline::preparation .............. Passed 1.82 sec | |
| Start 44: external_ringtest::neuron | |
| 9/162 Test #129: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 1.80 sec | |
| Start 55: testcorenrn_bbcore::neuron | |
| 10/162 Test #135: testcorenrn_kin::coreneuron_gpu_offline::preparation ............... Passed 1.82 sec | |
| Start 56: testcorenrn_bbcore::coreneuron_gpu_online | |
| 11/162 Test #139: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 1.92 sec | |
| Start 57: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate | |
| 12/162 Test #79: testcorenrn_gf::coreneuron_gpu_offline::preparation ................ Passed 2.14 sec | |
| Start 89: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| 13/162 Test #44: external_ringtest::neuron .......................................... Passed 2.07 sec | |
| Start 58: testcorenrn_bbcore::coreneuron_gpu_offline | |
| 14/162 Test #83: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 2.35 sec | |
| Start 95: testcorenrn_vecplay::coreneuron_gpu_offline::preparation | |
| 15/162 Test #55: testcorenrn_bbcore::neuron ......................................... Passed 2.21 sec | |
| Start 60: testcorenrn_bbcore::coreneuron_cpu_online | |
| 16/162 Test #56: testcorenrn_bbcore::coreneuron_gpu_online .......................... Passed 3.03 sec | |
| Start 61: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 17/162 Test #89: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 1.93 sec | |
| Start 99: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 18/162 Test #95: testcorenrn_vecplay::coreneuron_gpu_offline::preparation ........... Passed 2.32 sec | |
| Start 115: testcorenrn_watch::coreneuron_gpu_offline::preparation | |
| 19/162 Test #58: testcorenrn_bbcore::coreneuron_gpu_offline ......................... Passed 3.33 sec | |
| Start 62: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 20/162 Test #99: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 2.25 sec | |
| Start 119: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 21/162 Test #60: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 3.98 sec | |
| Start 65: testcorenrn_deriv::neuron | |
| 22/162 Test #115: testcorenrn_watch::coreneuron_gpu_offline::preparation ............. Passed 2.53 sec | |
| Start 45: external_ringtest::neuron_mpi | |
| 23/162 Test #57: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate ......... Passed 5.47 sec | |
| Start 66: testcorenrn_deriv::coreneuron_gpu_online | |
| 24/162 Test #62: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 1.97 sec | |
| Start 67: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate | |
| 25/162 Test #61: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 4.30 sec | |
| Start 68: testcorenrn_deriv::coreneuron_gpu_offline | |
| 26/162 Test #119: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 1.60 sec | |
| Start 46: external_ringtest::coreneuron_cpu_mpi | |
| 27/162 Test #65: testcorenrn_deriv::neuron .......................................... Passed 1.53 sec | |
| Start 70: testcorenrn_deriv::coreneuron_cpu_online | |
| 28/162 Test #70: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 4.46 sec | |
| Start 71: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 29/162 Test #68: testcorenrn_deriv::coreneuron_gpu_offline .......................... Passed 6.19 sec | |
| Start 72: testcorenrn_deriv::coreneuron_cpu_offline | |
| 30/162 Test #45: external_ringtest::neuron_mpi ...................................... Passed 6.89 sec | |
| Start 47: external_ringtest::coreneuron_cpu_mpi_offline | |
| 31/162 Test #66: testcorenrn_deriv::coreneuron_gpu_online ........................... Passed 7.52 sec | |
| Start 86: testcorenrn_patstim::coreneuron_gpu_offline | |
| 32/162 Test #67: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate .......... Passed 7.49 sec | |
| Start 121: testcorenrn_conc::neuron | |
| 33/162 Test #121: testcorenrn_conc::neuron ........................................... Passed 1.56 sec | |
| Start 122: testcorenrn_conc::coreneuron_gpu_online | |
| 34/162 Test #71: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 4.47 sec | |
| Start 123: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate | |
| 35/162 Test #46: external_ringtest::coreneuron_cpu_mpi .............................. Passed 9.00 sec | |
| Start 50: external_ringtest::coreneuron_gpu_mpi | |
| 36/162 Test #72: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 3.23 sec | |
| Start 124: testcorenrn_conc::coreneuron_gpu_offline | |
| 37/162 Test #47: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 4.04 sec | |
| Start 51: external_ringtest::coreneuron_gpu_mpi_offline | |
| 38/162 Test #86: testcorenrn_patstim::coreneuron_gpu_offline ........................ Passed 3.39 sec | |
| Start 126: testcorenrn_conc::coreneuron_cpu_online | |
| 39/162 Test #124: testcorenrn_conc::coreneuron_gpu_offline ........................... Passed 6.92 sec | |
| Start 127: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 40/162 Test #122: testcorenrn_conc::coreneuron_gpu_online ............................ Passed 7.35 sec | |
| Start 128: testcorenrn_conc::coreneuron_cpu_offline | |
| 41/162 Test #123: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate ........... Passed 7.78 sec | |
| Start 131: testcorenrn_kin::neuron | |
| 42/162 Test #126: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 7.69 sec | |
| Start 132: testcorenrn_kin::coreneuron_gpu_online | |
| 43/162 Test #128: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 2.41 sec | |
| Start 133: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate | |
| 44/162 Test #131: testcorenrn_kin::neuron ............................................ Passed 1.83 sec | |
| Start 134: testcorenrn_kin::coreneuron_gpu_offline | |
| 45/162 Test #51: external_ringtest::coreneuron_gpu_mpi_offline ...................... Passed 10.74 sec | |
| Start 75: testcorenrn_gf::neuron | |
| 46/162 Test #50: external_ringtest::coreneuron_gpu_mpi .............................. Passed 12.68 sec | |
| Start 76: testcorenrn_gf::coreneuron_gpu_online | |
| 47/162 Test #127: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 5.80 sec | |
| Start 136: testcorenrn_kin::coreneuron_cpu_online | |
| 48/162 Test #134: testcorenrn_kin::coreneuron_gpu_offline ............................ Passed 6.15 sec | |
| Start 137: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 49/162 Test #132: testcorenrn_kin::coreneuron_gpu_online ............................. Passed 6.96 sec | |
| Start 138: testcorenrn_kin::coreneuron_cpu_offline | |
| 50/162 Test #136: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 4.05 sec | |
| Start 144: channel_benchmark_hippo::neuron | |
| 51/162 Test #75: testcorenrn_gf::neuron ............................................. Passed 4.93 sec | |
| Start 77: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate | |
| 52/162 Test #133: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate ............ Passed 7.56 sec | |
| Start 145: channel_benchmark_hippo::coreneuron_gpu_online | |
| 53/162 Test #138: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 2.15 sec | |
| Start 146: channel_benchmark_hippo::coreneuron_gpu_filemode | |
| 54/162 Test #137: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 4.10 sec | |
| Start 147: channel_benchmark_hippo::coreneuron_cpu_online | |
| 55/162 Test #76: testcorenrn_gf::coreneuron_gpu_online .............................. Passed 15.25 sec | |
| Start 78: testcorenrn_gf::coreneuron_gpu_offline | |
| 56/162 Test #77: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate ............. Passed 31.42 sec | |
| Start 80: testcorenrn_gf::coreneuron_cpu_online | |
| 57/162 Test #78: testcorenrn_gf::coreneuron_gpu_offline ............................. Passed 24.08 sec | |
| Start 81: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 58/162 Test #80: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 23.42 sec | |
| Start 82: testcorenrn_gf::coreneuron_cpu_offline | |
| 59/162 Test #81: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 28.02 sec | |
| Start 85: testcorenrn_patstim::neuron | |
| 60/162 Test #85: testcorenrn_patstim::neuron ........................................ Passed 3.43 sec | |
| Start 88: testcorenrn_patstim::coreneuron_cpu_offline | |
| 61/162 Test #82: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 15.20 sec | |
| Start 91: testcorenrn_vecplay::neuron | |
| 62/162 Test #91: testcorenrn_vecplay::neuron ........................................ Passed 2.93 sec | |
| Start 92: testcorenrn_vecplay::coreneuron_gpu_online | |
| 63/162 Test #88: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 10.78 sec | |
| Start 93: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate | |
| 64/162 Test #144: channel_benchmark_hippo::neuron .................................... Passed 85.94 sec | |
| Start 148: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 65/162 Test #145: channel_benchmark_hippo::coreneuron_gpu_online ..................... Passed 85.92 sec | |
| Start 150: channel_benchmark_sscx::neuron | |
| 66/162 Test #92: testcorenrn_vecplay::coreneuron_gpu_online ......................... Passed 32.74 sec | |
| Start 94: testcorenrn_vecplay::coreneuron_gpu_offline | |
| 67/162 Test #146: channel_benchmark_hippo::coreneuron_gpu_filemode ................... Passed 108.30 sec | |
| Start 151: channel_benchmark_sscx::coreneuron_gpu_online | |
| 68/162 Test #147: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 117.00 sec | |
| Start 152: channel_benchmark_sscx::coreneuron_gpu_filemode | |
| 69/162 Test #93: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate ........ Passed 46.74 sec | |
| Start 96: testcorenrn_vecplay::coreneuron_cpu_online | |
| 70/162 Test #94: testcorenrn_vecplay::coreneuron_gpu_offline ........................ Passed 42.16 sec | |
| Start 97: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 71/162 Test #96: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 25.32 sec | |
| Start 98: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 72/162 Test #150: channel_benchmark_sscx::neuron ..................................... Passed 70.11 sec | |
| Start 153: channel_benchmark_sscx::coreneuron_cpu_online | |
| 73/162 Test #98: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 27.13 sec | |
| Start 111: testcorenrn_watch::neuron | |
| 74/162 Test #148: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 92.75 sec | |
| Start 154: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 75/162 Test #111: testcorenrn_watch::neuron .......................................... Passed 2.50 sec | |
| Start 112: testcorenrn_watch::coreneuron_gpu_online | |
| 76/162 Test #97: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 31.62 sec | |
| Start 113: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate | |
| 77/162 Test #151: channel_benchmark_sscx::coreneuron_gpu_online ...................... Passed 78.51 sec | |
| Start 1: testneuron | |
| 78/162 Test #1: testneuron ......................................................... Passed 0.06 sec | |
| Start 2: ringtest | |
| 79/162 Test #2: ringtest ........................................................... Passed 0.33 sec | |
| Start 3: connect_dend | |
| 80/162 Test #3: connect_dend ....................................................... Passed 0.15 sec | |
| Start 4: pynrn_tests::basic_tests | |
| 81/162 Test #152: channel_benchmark_sscx::coreneuron_gpu_filemode .................... Passed 69.89 sec | |
| Start 5: rxdmod_tests::rxd_tests | |
| 82/162 Test #112: testcorenrn_watch::coreneuron_gpu_online ........................... Passed 17.43 sec | |
| Start 114: testcorenrn_watch::coreneuron_gpu_offline | |
| 83/162 Test #4: pynrn_tests::basic_tests ........................................... Passed 8.93 sec | |
| Start 6: rxdmod_tests::rxd_mpi_tests | |
| 84/162 Test #113: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate .......... Passed 24.44 sec | |
| Start 116: testcorenrn_watch::coreneuron_cpu_online | |
| 85/162 Test #114: testcorenrn_watch::coreneuron_gpu_offline .......................... Passed 18.08 sec | |
| Start 117: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 86/162 Test #153: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 58.45 sec | |
| Start 7: parallel_tests | |
| 87/162 Test #116: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 11.40 sec | |
| Start 118: testcorenrn_watch::coreneuron_cpu_offline | |
| 88/162 Test #7: parallel_tests ..................................................... Passed 7.40 sec | |
| Start 8: parallel_partrans | |
| 89/162 Test #8: parallel_partrans .................................................. Passed 3.67 sec | |
| Start 9: parallel_bas | |
| 90/162 Test #118: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 10.53 sec | |
| Start 141: testcorenrn_netstimdirect::direct_netstimdirect | |
| 91/162 Test #117: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 14.79 sec | |
| Start 142: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 92/162 Test #154: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 54.27 sec | |
| Start 10: coreneuron_modtests::fornetcon_py_cpu | |
| 93/162 Test #9: parallel_bas ....................................................... Passed 8.55 sec | |
| Start 11: coreneuron_modtests::direct_py_cpu | |
| 94/162 Test #141: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 10.08 sec | |
| Start 12: coreneuron_modtests::direct_hoc_cpu | |
| Start 13: coreneuron_modtests::spikes_py_cpu | |
| 95/162 Test #10: coreneuron_modtests::fornetcon_py_cpu .............................. Passed 4.51 sec | |
| Start 14: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 96/162 Test #11: coreneuron_modtests::direct_py_cpu ................................. Passed 3.40 sec | |
| Start 15: coreneuron_modtests::fast_imem_py_cpu | |
| 97/162 Test #142: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 9.07 sec | |
| Start 16: coreneuron_modtests::datareturn_py_cpu | |
| Start 17: coreneuron_modtests::test_units_py_cpu | |
| 98/162 Test #12: coreneuron_modtests::direct_hoc_cpu ................................ Passed 3.99 sec | |
| Start 18: coreneuron_modtests::test_netmove_py_cpu | |
| 99/162 Test #15: coreneuron_modtests::fast_imem_py_cpu .............................. Passed 2.81 sec | |
| Start 19: coreneuron_modtests::test_watchrange_py_cpu | |
| 100/162 Test #13: coreneuron_modtests::spikes_py_cpu ................................. Passed 5.53 sec | |
| Start 20: coreneuron_modtests::test_psolve_py_cpu | |
| 101/162 Test #17: coreneuron_modtests::test_units_py_cpu ............................. Passed 4.39 sec | |
| Start 21: coreneuron_modtests::test_natrans_py_cpu | |
| 102/162 Test #14: coreneuron_modtests::spikes_file_mode_py_cpu ....................... Passed 5.36 sec | |
| Start 25: coreneuron_modtests::direct_py_gpu | |
| 103/162 Test #19: coreneuron_modtests::test_watchrange_py_cpu ........................ Passed 4.46 sec | |
| Start 26: coreneuron_modtests::direct_hoc_gpu | |
| 104/162 Test #16: coreneuron_modtests::datareturn_py_cpu ............................. Passed 6.67 sec | |
| Start 27: coreneuron_modtests::spikes_py_gpu | |
| 105/162 Test #20: coreneuron_modtests::test_psolve_py_cpu ............................ Passed 4.48 sec | |
| Start 28: coreneuron_modtests::spikes_file_mode_py_gpu | |
| 106/162 Test #21: coreneuron_modtests::test_natrans_py_cpu ........................... Passed 4.16 sec | |
| Start 29: coreneuron_modtests::fast_imem_py_gpu | |
| 107/162 Test #18: coreneuron_modtests::test_netmove_py_cpu ........................... Passed 10.84 sec | |
| Start 30: coreneuron_modtests::datareturn_py_gpu | |
| 108/162 Test #29: coreneuron_modtests::fast_imem_py_gpu .............................. Passed 4.30 sec | |
| Start 31: coreneuron_modtests::test_units_py_gpu | |
| 109/162 Test #25: coreneuron_modtests::direct_py_gpu ................................. Passed 8.56 sec | |
| Start 32: coreneuron_modtests::test_netmove_py_gpu | |
| 110/162 Test #26: coreneuron_modtests::direct_hoc_gpu ................................ Passed 6.67 sec | |
| Start 33: coreneuron_modtests::test_watchrange_py_gpu | |
| 111/162 Test #28: coreneuron_modtests::spikes_file_mode_py_gpu ....................... Passed 9.03 sec | |
| Start 34: coreneuron_modtests::test_psolve_py_gpu | |
| 112/162 Test #27: coreneuron_modtests::spikes_py_gpu ................................. Passed 10.41 sec | |
| Start 35: coreneuron_modtests::test_natrans_py_gpu | |
| 113/162 Test #31: coreneuron_modtests::test_units_py_gpu ............................. Passed 5.64 sec | |
| Start 39: external_nrntest | |
| 114/162 Test #33: coreneuron_modtests::test_watchrange_py_gpu ........................ Passed 6.21 sec | |
| Start 64: testcorenrn_bbcore::compare_results | |
| 115/162 Test #64: testcorenrn_bbcore::compare_results ................................ Passed 0.07 sec | |
| Start 74: testcorenrn_deriv::compare_results | |
| 116/162 Test #74: testcorenrn_deriv::compare_results ................................. Passed 0.06 sec | |
| Start 84: testcorenrn_gf::compare_results | |
| 117/162 Test #84: testcorenrn_gf::compare_results .................................... Passed 0.06 sec | |
| Start 90: testcorenrn_patstim::compare_results | |
| 118/162 Test #90: testcorenrn_patstim::compare_results ............................... Passed 0.06 sec | |
| Start 100: testcorenrn_vecplay::compare_results | |
| 119/162 Test #100: testcorenrn_vecplay::compare_results ............................... Passed 0.06 sec | |
| Start 120: testcorenrn_watch::compare_results | |
| 120/162 Test #120: testcorenrn_watch::compare_results ................................. Passed 0.06 sec | |
| Start 130: testcorenrn_conc::compare_results | |
| 121/162 Test #130: testcorenrn_conc::compare_results .................................. Passed 0.06 sec | |
| Start 140: testcorenrn_kin::compare_results | |
| 122/162 Test #140: testcorenrn_kin::compare_results ................................... Passed 0.07 sec | |
| Start 143: testcorenrn_netstimdirect::compare_results | |
| 123/162 Test #143: testcorenrn_netstimdirect::compare_results ......................... Passed 0.06 sec | |
| Start 149: channel_benchmark_hippo::compare_results | |
| 124/162 Test #149: channel_benchmark_hippo::compare_results ........................... Passed 0.07 sec | |
| Start 155: channel_benchmark_sscx::compare_results | |
| 125/162 Test #155: channel_benchmark_sscx::compare_results ............................ Passed 0.14 sec | |
| 126/162 Test #35: coreneuron_modtests::test_natrans_py_gpu ........................... Passed 3.17 sec | |
| Start 22: coreneuron_modtests::spikes_mpi_py_cpu | |
| 127/162 Test #34: coreneuron_modtests::test_psolve_py_gpu ............................ Passed 4.18 sec | |
| 128/162 Test #30: coreneuron_modtests::datareturn_py_gpu ............................. Passed 11.70 sec | |
| Start 23: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 129/162 Test #32: coreneuron_modtests::test_netmove_py_gpu ........................... Passed 12.45 sec | |
| 130/162 Test #23: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................... Passed 5.16 sec | |
| Start 24: coreneuron_modtests::inputpresyn_py_cpu | |
| 131/162 Test #22: coreneuron_modtests::spikes_mpi_py_cpu ............................. Passed 9.18 sec | |
| Start 36: coreneuron_modtests::spikes_mpi_py_gpu | |
| 132/162 Test #24: coreneuron_modtests::inputpresyn_py_cpu ............................ Passed 9.43 sec | |
| Start 37: coreneuron_modtests::spikes_mpi_file_mode_py_gpu | |
| 133/162 Test #36: coreneuron_modtests::spikes_mpi_py_gpu ............................. Passed 12.71 sec | |
| Start 38: coreneuron_modtests::inputpresyn_py_gpu | |
| 134/162 Test #37: coreneuron_modtests::spikes_mpi_file_mode_py_gpu ................... Passed 15.00 sec | |
| 135/162 Test #38: coreneuron_modtests::inputpresyn_py_gpu ............................ Passed 12.61 sec | |
| Start 105: testcorenrn_vecevent::coreneuron_gpu_offline::preparation | |
| 136/162 Test #105: testcorenrn_vecevent::coreneuron_gpu_offline::preparation .......... Passed 9.76 sec | |
| Start 109: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 137/162 Test #109: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 3.44 sec | |
| Start 157: olfactory-bulb-3d::neuron::preparation | |
| 138/162 Test #157: olfactory-bulb-3d::neuron::preparation ............................. Passed 0.02 sec | |
| Start 159: olfactory-bulb-3d::coreneuron_gpu_online::preparation | |
| 139/162 Test #159: olfactory-bulb-3d::coreneuron_gpu_online::preparation .............. Passed 0.02 sec | |
| Start 161: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| 140/162 Test #161: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............. Passed 0.02 sec | |
| Start 40: reduced_dentate::neuron | |
| 141/162 Test #40: reduced_dentate::neuron ............................................ Passed 51.26 sec | |
| Start 41: reduced_dentate::coreneuron_cpu | |
| 142/162 Test #39: external_nrntest ................................................... Passed 128.06 sec | |
| 143/162 Test #41: reduced_dentate::coreneuron_cpu .................................... Passed 46.24 sec | |
| Start 42: reduced_dentate::coreneuron_gpu | |
| 144/162 Test #5: rxdmod_tests::rxd_tests ............................................ Passed 249.75 sec | |
| 145/162 Test #42: reduced_dentate::coreneuron_gpu .................................... Passed 64.55 sec | |
| Start 49: external_ringtest::coreneuron_cpu_mpi_threads | |
| Start 43: reduced_dentate::compare_results | |
| 146/162 Test #43: reduced_dentate::compare_results ................................... Passed 0.06 sec | |
| 147/162 Test #6: rxdmod_tests::rxd_mpi_tests ........................................ Passed 271.33 sec | |
| 148/162 Test #49: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 3.06 sec | |
| Start 53: external_ringtest::coreneuron_gpu_mpi_threads | |
| 149/162 Test #53: external_ringtest::coreneuron_gpu_mpi_threads ...................... Passed 8.56 sec | |
| Start 101: testcorenrn_vecevent::neuron | |
| Start 102: testcorenrn_vecevent::coreneuron_gpu_online | |
| 150/162 Test #101: testcorenrn_vecevent::neuron ....................................... Passed 2.46 sec | |
| Start 103: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate | |
| 151/162 Test #102: testcorenrn_vecevent::coreneuron_gpu_online ........................ Passed 12.24 sec | |
| Start 104: testcorenrn_vecevent::coreneuron_gpu_offline | |
| 152/162 Test #103: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate ....... Passed 10.57 sec | |
| Start 106: testcorenrn_vecevent::coreneuron_cpu_online | |
| 153/162 Test #104: testcorenrn_vecevent::coreneuron_gpu_offline ....................... Passed 6.95 sec | |
| Start 107: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 154/162 Test #106: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 7.40 sec | |
| Start 108: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 155/162 Test #108: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 7.53 sec | |
| Start 156: olfactory-bulb-3d::neuron | |
| 156/162 Test #107: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 9.31 sec | |
| Start 158: olfactory-bulb-3d::coreneuron_gpu_online | |
| 157/162 Test #158: olfactory-bulb-3d::coreneuron_gpu_online ........................... Passed 90.15 sec | |
| Start 160: olfactory-bulb-3d::coreneuron_cpu_online | |
| 158/162 Test #156: olfactory-bulb-3d::neuron .......................................... Passed 94.68 sec | |
| Start 54: external_ringtest::compare_results | |
| Start 110: testcorenrn_vecevent::compare_results | |
| 159/162 Test #110: testcorenrn_vecevent::compare_results .............................. Passed 0.09 sec | |
| 160/162 Test #54: external_ringtest::compare_results ................................. Passed 0.10 sec | |
| 161/162 Test #160: olfactory-bulb-3d::coreneuron_cpu_online ........................... Passed 40.08 sec | |
| Start 162: olfactory-bulb-3d::compare_results | |
| 162/162 Test #162: olfactory-bulb-3d::compare_results ................................. Passed 0.24 sec | |
| 100% tests passed, 0 tests failed out of 162 | |
| Total Test time (real) = 677.32 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.8.3 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1640092825:step_script [0Ksection_start:1640092825:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=52680 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=112534 responseStatus[0;m=201 Created token[0;m=6aJNzfy4 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=52710 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=112534 responseStatus[0;m=201 Created token[0;m=6aJNzfy4 | |
| section_end:1640092826:upload_artifacts_on_success [0Ksection_start:1640092826:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1640092827:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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