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cdw / How subblocks work.ipynb
Created October 11, 2018 21:35
How to load a single frame of a CZI file without reading the whole thing into memory
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cdw / Cardio Deformation Tracking Experiment.ipynb
Created March 4, 2019 22:35
Can we track cardio deformation via the optic flow tracking in OpenPIV?
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cdw / Cut though a mesh or volume.ipynb
Created July 19, 2019 00:21
Taking a cut through a mesh or volume
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cdw / 01_read_lif.ipynb
Created January 14, 2020 22:28
Load timelapse frames from Leica microscopes (LIF format)
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cdw / 01_cell_cycle.ipynb
Last active January 24, 2020 00:40
Cell cycle for c6
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cdw / 2020_02_11_14_22_timelapse_seg_clustering.ipynb
Last active February 12, 2020 23:06
Cluster metrics for colony-formation evaluation
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cdw / Untitled.ipynb
Last active March 18, 2020 21:08
Bar plot with error
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cdw / 04_clustering_metrics.ipynb
Created April 6, 2020 17:38
Clustering metrics for comparing colony clusteringh
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cdw / 01_structure_tensor.ipynb
Created April 10, 2020 19:57
Structure tensor for quantifying orientation and level of organization in myofibrils
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