clintval

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${c4}             G➖➖C        
                 C➖G        
                     TA        
                 C➖G        
             G➖➖C        
         A➖➖➖T        
         G➖➖➖C        
             T➖➖A        
                 C➖G        

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# Maintainer: Clint Valentine <valentine.clint@gmail.com>

pkgname=polyphen
pkgver=2.2.2r405c
pkgrel=1
dbver=2.2.2
blastver=2.7.1
pkgdesc="A tool to predict impact of amino acid substitutions on the structure and function of human proteins"
arch=('any')
url="http://genetics.bwh.harvard.edu/pph2/dokuwiki/downloads"

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# Maintainer: Clint Valentine <valentine.clint@gmail.com>

pkgname=vep
pkgver=90.10
pkgrel=1
pkgdesc="Determines the effect of variants on genes, transcripts, and protein sequences as well as regulatory regions"
arch=('x86_64')
url="https://useast.ensembl.org/info/docs/tools/vep/index.html"
license=('GPL3')
depends=('perl>=5' 'perl-module-build' 'bioperl-live-git')

clintval

rule illumina_basecalls_to_sam:
    input:
        basecalls_dir=basecalls_dir,
        barcodes_dir=rules.extract_illumina_barcodes.output.barcodes_dir,
        library_params=rules.create_basecalling_params.output.library_params
    output: list_unmerged_sample_bam()
    threads: max(1, int(threads / len(lanes)))
    resources:
        gc_time_limit=50,
        gc_heap_free_limit=10,

clintval

import base64

import matplotlib.pyplot as plt

from matplotlib import animation
from tempfile import NamedTemporaryFile

__all__ = [
    'Animation',
    'animate_3d_scatter']