Liang Cai coronin

## .screenrc
# the following two lines give a two-line status, with the current window highlighted
hardstatus alwayslastline
hardstatus string '%{= kG}[%{G}%H%? %1`%?%{g}][%= %{= kw}%-w%{+b yk} %n*%t%?(%u)%? %{-}%+w %=%{g}][%{B}%m/%d %{W}%C%A%{g}]'

# huge scrollback buffer
defscrollback 5000

# no welcome message
startup_message off

## crispr.html
<!doctype html>
<html>
<head>
  <meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
  <title>crispr scanner, made by Liang Cai</title>
  <style type="text/css" media="screen"><!--
    body{margin:25px;padding:0;font-family:Arial,Helvetica,sans-serif;font-size:100%;line-height:1.5}
    article,aside,figcaption,figure,footer,header,hgroup,nav,section{display:block}
    h1,h2,h3,h4{margin:1em 0 .5em;line-height:1.25;font-weight:700}
    h1{font-size:2em}

## ots_server.patch
diff --git a/src/crisprutil.cpp b/src/crisprutil.cpp
index 91d9b4c..0480e27 100644
--- a/src/crisprutil.cpp
+++ b/src/crisprutil.cpp
@@ -44,6 +44,10 @@ void CrisprUtil::_populate_cmap() {
 string CrisprUtil::get_crispr(uint64_t id) {
     return util::bits_to_string( get_crispr_int(id), crispr_data.seq_length );
 }
+// 2014-9-9 : id with offset need to be correct
+string CrisprUtil::get_offset_crispr(uint64_t id) {

## table2col.php
<!--
Copyright (c) 2014 Liang Cai (cailiang.net)
Inspired by 2010 Shawn M. Douglas (shawndouglas.com)
-->

<?php
echo "<html>
<head><title>table2col | Excel xls, table to column copy and paste converter</title></head>
<body><h1>Copy &amp; Paste Table-to-Column Converter</h1>
<form action='table2col.php' method='post'>

## excel2wiki.php
<!--
Copyright (c) 2010 Shawn M. Douglas (shawndouglas.com)

Permission is hereby granted, free of charge, to any person
obtaining a copy of this software and associated documentation
files (the "Software"), to deal in the Software without
restriction, including without limitation the rights to use,
copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the
Software is furnished to do so, subject to the following

## chat-frontend.js
$(function () {
    "use strict";

    // for better performance - to avoid searching in DOM
    var content = $('#content');
    var input = $('#input');
    var status = $('#status');

    // my color assigned by the server
    var myColor = false;

## auto_crispr_scanner.js
var page = require('webpage').create();
page.viewportSize = { width: 1024, height: 768 };
// console.log('Request cripspr scanner as ' + page.settings.userAgent);

var sp = 'human', // only allow: human mouse dog
    seq = 'ggaggaagggcctgagtccgagcagaagaagaagggctcccatcacatcaaccggtggcgcattgccacgaagcaggccaatggggaggacatcgatgtcacctccaatgactagggtgggc';

page.open('http://xx.cail.cn/crispr.html?sp='+sp+'&seq='+seq, function() {
  var data = page.evaluate(function () {
    return document.querySelector('span#server_status').innerText;

## tmux-cheatsheet.markdown

      
              1 file
            
          
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                coronin
                / tmux-cheatsheet.markdown
            
            
              Created
              April 14, 2016 23:03
                — forked from MohamedAlaa/tmux-cheatsheet.markdown
            
              
                tmux shortcuts & cheatsheet
              
          
    tmux shortcuts & cheatsheet

start new:
tmux

start new with session name:
tmux new -s myname


## osx_install.sh
#!/bin/sh
echo Install all AppStore Apps at first!
# no solution to automate AppStore installs
read -p "Press any key to continue... " -n1 -s
echo  '\n'

echo Install Homebrew, Postgres, wget and cask
ruby -e "$(curl -fsSL https://raw.github.com/Homebrew/homebrew/go/install)"
brew tap homebrew/science
brew install wget

## srtTranslate.py
## Liang Cai, 2019-6-22

import time
import translation


def translate_line(a):
    time.sleep(1)
    try:
        b = translation.iciba(a, dst = 'zh')  # @@@@
	# the following two lines give a two-line status, with the current window highlighted
	hardstatus alwayslastline
	hardstatus string '%{= kG}[%{G}%H%? %1`%?%{g}][%= %{= kw}%-w%{+b yk} %n*%t%?(%u)%? %{-}%+w %=%{g}][%{B}%m/%d %{W}%C%A%{g}]'

	# huge scrollback buffer
	defscrollback 5000

	# no welcome message
	startup_message off
	<!doctype html>
	<html>
	<head>
	<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
	<title>crispr scanner, made by Liang Cai</title>
	<style type="text/css" media="screen"><!--
	body{margin:25px;padding:0;font-family:Arial,Helvetica,sans-serif;font-size:100%;line-height:1.5}
	article,aside,figcaption,figure,footer,header,hgroup,nav,section{display:block}
	h1,h2,h3,h4{margin:1em 0 .5em;line-height:1.25;font-weight:700}
	h1{font-size:2em}
	diff --git a/src/crisprutil.cpp b/src/crisprutil.cpp
	index 91d9b4c..0480e27 100644
	--- a/src/crisprutil.cpp
	+++ b/src/crisprutil.cpp
	@@ -44,6 +44,10 @@ void CrisprUtil::_populate_cmap() {
	string CrisprUtil::get_crispr(uint64_t id) {
	return util::bits_to_string( get_crispr_int(id), crispr_data.seq_length );
	}
	+// 2014-9-9 : id with offset need to be correct
	+string CrisprUtil::get_offset_crispr(uint64_t id) {
	<!--
	Copyright (c) 2014 Liang Cai (cailiang.net)
	Inspired by 2010 Shawn M. Douglas (shawndouglas.com)
	-->

	<?php
	echo "<html>
	<head><title>table2col \| Excel xls, table to column copy and paste converter</title></head>
	<body><h1>Copy & Paste Table-to-Column Converter</h1>
	<form action='table2col.php' method='post'>
	<!--
	Copyright (c) 2010 Shawn M. Douglas (shawndouglas.com)

	Permission is hereby granted, free of charge, to any person
	obtaining a copy of this software and associated documentation
	files (the "Software"), to deal in the Software without
	restriction, including without limitation the rights to use,
	copy, modify, merge, publish, distribute, sublicense, and/or sell
	copies of the Software, and to permit persons to whom the
	Software is furnished to do so, subject to the following
	$(function () {
	"use strict";

	// for better performance - to avoid searching in DOM
	var content = $('#content');
	var input = $('#input');
	var status = $('#status');

	// my color assigned by the server
	var myColor = false;
	var page = require('webpage').create();
	page.viewportSize = { width: 1024, height: 768 };
	// console.log('Request cripspr scanner as ' + page.settings.userAgent);

	var sp = 'human', // only allow: human mouse dog
	seq = 'ggaggaagggcctgagtccgagcagaagaagaagggctcccatcacatcaaccggtggcgcattgccacgaagcaggccaatggggaggacatcgatgtcacctccaatgactagggtgggc';

	page.open('http://xx.cail.cn/crispr.html?sp='+sp+'&seq='+seq, function() {
	var data = page.evaluate(function () {
	return document.querySelector('span#server_status').innerText;
	#!/bin/sh
	echo Install all AppStore Apps at first!
	# no solution to automate AppStore installs
	read -p "Press any key to continue... " -n1 -s
	echo '\n'

	echo Install Homebrew, Postgres, wget and cask
	ruby -e "$(curl -fsSL https://raw.github.com/Homebrew/homebrew/go/install)"
	brew tap homebrew/science
	brew install wget
	## Liang Cai, 2019-6-22

	import time
	import translation


	def translate_line(a):
	time.sleep(1)
	try:
	b = translation.iciba(a, dst = 'zh') # @@@@