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{
 "metadata": {
  "name": "numpy-and-graphing"
 },
 "nbformat": 3,
 "nbformat_minor": 0,
 "worksheets": [
  {
   "cells": [
    {

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{
 "metadata": {
  "name": "sampleA_pca_ds"
 },
 "nbformat": 3,
 "nbformat_minor": 0,
 "worksheets": [
  {
   "cells": [
    {

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{
 "metadata": {
  "name": "sampleA_pca_ds"
 },
 "nbformat": 3,
 "nbformat_minor": 0,
 "worksheets": [
  {
   "cells": [
    {

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{
 "metadata": {
  "name": "sampleA_pca_ds"
 },
 "nbformat": 3,
 "nbformat_minor": 0,
 "worksheets": [
  {
   "cells": [
    {

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import khmer, sys, threading, time

###

s = set()
def read_names(rparser, tnum):
    print 'started', tnum

    n = 0
    for n, read in enumerate(rparser):

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{
 "metadata": {
  "name": "corr"
 },
 "nbformat": 3,
 "nbformat_minor": 0,
 "worksheets": [
  {
   "cells": [
    {

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Hi bwa users,

The bwa-mem manuscript has been rejected. Interestingly, the first
reviewer only raised a couple of minor concerns and then accepted the
manuscript in the second round of the review. The second reviewer made
quite a few mistakes on some basic concepts and was hostile from the
beginning. The third reviewer gave fair and good review in the first
round, all of which have been addressed, but he then tried hard to
argue one particular mapper to be the best in accuracy that on the
contrary is inferior to most others in my view. I admit that my

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> Tutorial: How to build an enduring online research presence
> using social networking and open science: the voodoo of blogging,
> Twitter, Figshare, and Github

Titus (an Assistant Professor at MSU) has been blogging since 2006 or so,
and now uses a variety of social media and open science sites on a regular
basis, including Twitter, arXiv, Google Scholar, and figshare.  He has built
an online presence that (he claims) has helped him connect to collaborators,
become Highly Invited, attract job offers, publish papers, increase citations
for his papers, and get grants.  Titus is also a strong advocate of