ctrueden

git clean -x -d -f
git submodule foreach git clean -x -d -f
./Build.sh
./bin/make-app.py nojre linux64
tar cvf fiji-nojre.tar Fiji.app
jar cvf fiji-nojre.zip Fiji.app

ctrueden

: curtis@rook ~/code/LOCI/scifio (develop)
git st
# On branch develop
nothing to commit (working directory clean)
: curtis@rook ~/code/LOCI/scifio (develop)
echo hello >> pom.xml
: curtis@rook ~/code/LOCI/scifio (develop)
git st
# On branch develop
# Changes not staged for commit:

ctrueden

//
// KnipImageJ.java
//

/*
ImageJ software for multidimensional image processing and analysis.

Copyright (c) 2010, ImageJDev.org.
All rights reserved.

ctrueden

//
// OpsTyping.java
//

import net.imglib2.type.numeric.ComplexType;
import net.imglib2.type.numeric.RealType;

public class OpsTyping {

	public <V extends ComplexType<V>> void complex(V arg) {

ctrueden

//
// Overflows.java
//

import java.math.BigInteger;

/**
 * Benchmarks performance of several methods of detecting integer overflows.
 * 
 * @author Curtis Rueden

ctrueden

	/**
	 * Protected constructor that can re-use the passed position array.
	 *
	 * @param position
	 *            array used to store the position.
	 * @param copy
	 *            flag indicating whether to make a copy of the array.
	 */
	protected RealPoint( final double[] position, final boolean copy )
	{

ctrueden

//
// ConstructorPerformance.java
//

public class ConstructorPerformance {
	
	public static double x = 1, y = 2, z = 3;

	public static void main(final String[] args) throws Exception {
		final int iter = 10000000;

ctrueden

[WARNING] skip failed file : Could not extract header on file /Users/curtis/code/ImageJ/imagej/core/ext/src/test/java/imagej/ext/plugin/PluginDiscovery.java for reason copyright [Copyright (C) 2009 - 2012 Board of Regents of the University of
Wisconsin-Madison, Broad Institute of MIT and Harvard, and Max Planck
Institute of Molecular Cell Biology and Genetics.] is not valid
org.codehaus.mojo.license.header.InvalideFileHeaderException: Could not extract header on file /Users/curtis/code/ImageJ/imagej/core/ext/src/test/java/imagej/ext/plugin/PluginDiscovery.java for reason copyright [Copyright (C) 2009 - 2012 Board of Regents of the University of
Wisconsin-Madison, Broad Institute of MIT and Harvard, and Max Planck
Institute of Molecular Cell Biology and Genetics.] is not valid
	at org.codehaus.mojo.license.UpdateFileHeaderMojo.processFile(UpdateFileHeaderMojo.java:776)
	at org.codehaus.mojo.license.UpdateFileHeaderMojo.prepareProcessFile(UpdateFileHeaderMojo.java:689)
	at org.codehaus.mojo.license.UpdateFileHe

ctrueden

: curtis@sirius ~/code/Maven/license-maven-plugin (fix-multi-line-copyright)
mvn install
[INFO] Scanning for projects...
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building License Maven Plugin 1.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ license-maven-plugin ---
[INFO] 

ctrueden

: curtis@sirius ~/code/ImageJ/imglib (master)
find . -exec sed -i '' -e 's/^M//' {} \;
sed: .: in-place editing only works for regular files
sed: ./.git: in-place editing only works for regular files
sed: ./.git/hooks: in-place editing only works for regular files
sed: ./.git/info: in-place editing only works for regular files
sed: ./.git/logs: in-place editing only works for regular files
sed: ./.git/logs/refs: in-place editing only works for regular files
sed: ./.git/logs/refs/heads: in-place editing only works for regular files
sed: ./.git/logs/refs/remotes: in-place editing only works for regular files