Created
October 21, 2021 09:25
-
-
Save akesandgren/d074267f593b3b714343e4b082af57b2 to your computer and use it in GitHub Desktop.
(partial) EasyBuild log for failed build of /scratch/eb-ake-tmp/eb-4t9un5bf/files_pr12964/s/SciPy-bundle/SciPy-bundle-2021.05-intel-2021a.eb (PR(s) #12964)
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
....................................................................................................................................... [ 55%] | |
....................................................................................................................................... [ 56%] | |
....................................................................................................................................... [ 57%] | |
....................................................................... [ 57%] | |
lib/tests/test_arraysetops.py ................................... [ 57%] | |
lib/tests/test_arrayterator.py . [ 57%] | |
lib/tests/test_financial_expired.py . [ 57%] | |
lib/tests/test_format.py ...................................... [ 58%] | |
lib/tests/test_function_base.py ....................................................................................................... [ 59%] | |
.............................................x......................................................................................... [ 60%] | |
.......................................................................... [ 60%] | |
lib/tests/test_histograms.py ............................................................ [ 61%] | |
lib/tests/test_index_tricks.py .............................................. [ 61%] | |
lib/tests/test_io.py .................................................................................................................. [ 62%] | |
............................................................................. [ 62%] | |
lib/tests/test_mixins.py ........... [ 62%] | |
lib/tests/test_nanfunctions.py ........................................................................................... [ 63%] | |
lib/tests/test_packbits.py ............................................................................................................ [ 64%] | |
....................................................................................................................................... [ 65%] | |
..................................... [ 65%] | |
lib/tests/test_polynomial.py .................. [ 65%] | |
lib/tests/test_recfunctions.py .........................................x........ [ 66%] | |
lib/tests/test_regression.py ........................... [ 66%] | |
lib/tests/test_shape_base.py .................................................................. [ 67%] | |
lib/tests/test_stride_tricks.py .......................... [ 67%] | |
lib/tests/test_twodim_base.py .................................. [ 67%] | |
lib/tests/test_type_check.py .................................................... [ 67%] | |
lib/tests/test_ufunclike.py ...... [ 67%] | |
lib/tests/test_utils.py ............... [ 68%] | |
linalg/tests/test_build.py . [ 68%] | |
linalg/tests/test_deprecations.py . [ 68%] | |
linalg/tests/test_linalg.py ..........................................................................................F................ [ 68%] | |
..........................................................................................................................F.F.......... [ 69%] | |
..................................................... [ 70%] | |
linalg/tests/test_regression.py ......... [ 70%] | |
ma/tests/test_core.py ................................................................................................................. [ 71%] | |
....................................................................................................................................... [ 72%] | |
....................................................................................................................................... [ 73%] | |
....................................................................................................................................... [ 74%] | |
....................................................................................................................................... [ 75%] | |
....................................................................................................................................... [ 76%] | |
....................................................................................................................................... [ 77%] | |
....................................................................................................................................... [ 78%] | |
....................................................................................................................................... [ 79%] | |
....................................................................................................................................... [ 80%] | |
.........................................................................................................xx............................ [ 81%] | |
....................................................................................................................................... [ 82%] | |
....................................................................................................................................... [ 83%] | |
.... [ 83%] | |
ma/tests/test_deprecations.py ...... [ 83%] | |
ma/tests/test_extras.py ....................................................................................... [ 84%] | |
ma/tests/test_mrecords.py ........................ [ 84%] | |
ma/tests/test_old_ma.py ...................................... [ 84%] | |
ma/tests/test_regression.py ............. [ 85%] | |
ma/tests/test_subclassing.py ............ [ 85%] | |
matrixlib/tests/test_defmatrix.py ........................................... [ 85%] | |
matrixlib/tests/test_interaction.py ....................... [ 85%] | |
matrixlib/tests/test_masked_matrix.py .............. [ 85%] | |
matrixlib/tests/test_matrix_linalg.py .......................................... [ 86%] | |
matrixlib/tests/test_multiarray.py .. [ 86%] | |
matrixlib/tests/test_numeric.py .. [ 86%] | |
matrixlib/tests/test_regression.py .... [ 86%] | |
polynomial/tests/test_chebyshev.py ......................................... [ 86%] | |
polynomial/tests/test_classes.py ...................................................................................................... [ 87%] | |
....................................................................................................................................... [ 88%] | |
[ 88%] | |
polynomial/tests/test_hermite.py .................................. [ 88%] | |
polynomial/tests/test_hermite_e.py .................................. [ 88%] | |
polynomial/tests/test_laguerre.py .................................. [ 89%] | |
polynomial/tests/test_legendre.py .................................. [ 89%] | |
polynomial/tests/test_polynomial.py ............................... [ 89%] | |
polynomial/tests/test_polyutils.py ...... [ 89%] | |
polynomial/tests/test_printing.py ............................................................... [ 90%] | |
random/tests/test_direct.py ....................................................................... [ 90%] | |
random/tests/test_extending.py s. [ 90%] | |
random/tests/test_generator_mt19937.py ................................................................................................ [ 91%] | |
....................................................................................................................................... [ 92%] | |
........... [ 92%] | |
random/tests/test_generator_mt19937_regressions.py ............ [ 92%] | |
random/tests/test_random.py ........................................................................................................... [ 93%] | |
....................... [ 93%] | |
random/tests/test_randomstate.py ...................................................................................................... [ 94%] | |
................................................................. [ 94%] | |
random/tests/test_randomstate_regression.py ................. [ 94%] | |
random/tests/test_regression.py ........... [ 95%] | |
random/tests/test_seed_sequence.py .. [ 95%] | |
random/tests/test_smoke.py .s.......................................................................................................... [ 95%] | |
....................................................................................................................................... [ 96%] | |
......................ss............................................................................................................... [ 97%] | |
............................................................................... [ 98%] | |
testing/tests/test_decorators.py ........ [ 98%] | |
testing/tests/test_utils.py ..................................................................................sss...................... [ 99%] | |
..................... [ 99%] | |
tests/test_ctypeslib.py ....................... [ 99%] | |
tests/test_matlib.py ........ [ 99%] | |
tests/test_numpy_version.py . [ 99%] | |
tests/test_public_api.py .......... [ 99%] | |
tests/test_reloading.py ... [ 99%] | |
tests/test_scripts.py xxx. [ 99%] | |
typing/tests/test_isfile.py . [100%] | |
=================================================================== ERRORS ==================================================================== | |
_______________________________________________ ERROR at setup of TestF90Callback.test_gh17797 ________________________________________________ | |
self = <numpy.f2py.tests.test_callback.TestF90Callback object at 0x7f3fa2e7acd0> | |
def setup(self): | |
if sys.platform == 'win32': | |
pytest.skip('Fails with MinGW64 Gfortran (Issue #9673)') | |
if self.module is not None: | |
return | |
# Check compiler availability first | |
if not has_c_compiler(): | |
pytest.skip("No C compiler available") | |
codes = [] | |
if self.sources: | |
codes.extend(self.sources) | |
if self.code is not None: | |
codes.append(self.suffix) | |
needs_f77 = False | |
needs_f90 = False | |
for fn in codes: | |
if fn.endswith('.f'): | |
needs_f77 = True | |
elif fn.endswith('.f90'): | |
needs_f90 = True | |
if needs_f77 and not has_f77_compiler(): | |
pytest.skip("No Fortran 77 compiler available") | |
if needs_f90 and not has_f90_compiler(): | |
pytest.skip("No Fortran 90 compiler available") | |
# Build the module | |
if self.code is not None: | |
> self.module = build_code(self.code, options=self.options, | |
skip=self.skip, only=self.only, | |
suffix=self.suffix, | |
module_name=self.module_name) | |
codes = ['.f90'] | |
fn = '.f90' | |
needs_f77 = False | |
needs_f90 = True | |
self = <numpy.f2py.tests.test_callback.TestF90Callback object at 0x7f3fa2e7acd0> | |
/scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/f2py/tests/util.py:351: | |
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
/scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/f2py/tests/util.py:73: in wrapper | |
memo[key] = func(*a, **kw) | |
a = ('\nfunction gh17797(f, y) result(r)\n external f\n integer(8) :: r, f\n integer(8), dimension(:) :: y\n r = f(0)\n r = r + sum(y)\nend function gh17797\n',) | |
func = <function build_code at 0x7f3fad67d3a0> | |
key = "(('\\nfunction gh17797(f, y) result(r)\\n external f\\n integer(8) :: r, f\\n integer(8), dimension(:) :: y\\n r ...+ sum(y)\\nend function gh17797\\n',), {'options': [], 'skip': [], 'only': [], 'suffix': '.f90', 'module_name': None})" | |
kw = {'module_name': None, 'only': [], 'options': [], 'skip': [], ...} | |
memo = {'(("\\n subroutine t(fun,a)\\n integer a\\ncf2py intent(out) a\\n external fun\\n call fun(a...-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.o" failed with exit status 1\n')} | |
/scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/f2py/tests/util.py:158: in build_code | |
return build_module([path], options=options, skip=skip, only=only, | |
f = <_io.TextIOWrapper name='/scratch/eb-ake-tmp/eb-4t9un5bf/tmpmulif8iz.f90' mode='w' encoding='UTF-8'> | |
module_name = None | |
only = [] | |
options = [] | |
path = '/scratch/eb-ake-tmp/eb-4t9un5bf/tmpmulif8iz.f90' | |
skip = [] | |
source_code = '\nfunction gh17797(f, y) result(r)\n external f\n integer(8) :: r, f\n integer(8), dimension(:) :: y\n r = f(0)\n r = r + sum(y)\nend function gh17797\n' | |
suffix = '.f90' | |
/scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/f2py/tests/util.py:73: in wrapper | |
memo[key] = func(*a, **kw) | |
a = (['/scratch/eb-ake-tmp/eb-4t9un5bf/tmpmulif8iz.f90'],) | |
func = <function build_module at 0x7f3fad67d280> | |
key = "((['/scratch/eb-ake-tmp/eb-4t9un5bf/tmpmulif8iz.f90'],), {'options': [], 'skip': [], 'only': [], 'module_name': None})" | |
kw = {'module_name': None, 'only': [], 'options': [], 'skip': []} | |
memo = {"((['/scratch/eb-ake-tmp/eb-4t9un5bf/tmpdx56fvfa.f'],), {'options': ['-DF2PY_USE_PYTHON_TLS'], 'skip': [], 'only': []..._module_5405' from '/scratch/eb-ake-tmp/eb-4t9un5bf/tmpv125ocrk/_test_ext_module_5405.cpython-39-x86_64-linux-gnu.so'>} | |
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
source_files = ['/scratch/eb-ake-tmp/eb-4t9un5bf/tmpmulif8iz.f90'], options = [], skip = [], only = [], module_name = '_test_ext_module_5407' | |
@_memoize | |
def build_module(source_files, options=[], skip=[], only=[], module_name=None): | |
""" | |
Compile and import a f2py module, built from the given files. | |
""" | |
code = ("import sys; sys.path = %s; import numpy.f2py as f2py2e; " | |
"f2py2e.main()" % repr(sys.path)) | |
d = get_module_dir() | |
# Copy files | |
dst_sources = [] | |
f2py_sources = [] | |
for fn in source_files: | |
if not os.path.isfile(fn): | |
raise RuntimeError("%s is not a file" % fn) | |
dst = os.path.join(d, os.path.basename(fn)) | |
shutil.copyfile(fn, dst) | |
dst_sources.append(dst) | |
base, ext = os.path.splitext(dst) | |
if ext in ('.f90', '.f', '.c', '.pyf'): | |
f2py_sources.append(dst) | |
# Prepare options | |
if module_name is None: | |
module_name = get_temp_module_name() | |
f2py_opts = ['-c', '-m', module_name] + options + f2py_sources | |
if skip: | |
f2py_opts += ['skip:'] + skip | |
if only: | |
f2py_opts += ['only:'] + only | |
# Build | |
cwd = os.getcwd() | |
try: | |
os.chdir(d) | |
cmd = [sys.executable, '-c', code] + f2py_opts | |
p = subprocess.Popen(cmd, stdout=subprocess.PIPE, | |
stderr=subprocess.STDOUT) | |
out, err = p.communicate() | |
if p.returncode != 0: | |
> raise RuntimeError("Running f2py failed: %s\n%s" | |
% (cmd[4:], asstr(out))) | |
E RuntimeError: Running f2py failed: ['-m', '_test_ext_module_5407', '/scratch/eb-ake-tmp/eb-4t9un5bf/tmpv125ocrk/tmpmulif8iz.f90'] | |
E running build | |
E running config_cc | |
E unifing config_cc, config, build_clib, build_ext, build commands --compiler options | |
E running config_fc | |
E unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options | |
E running build_src | |
E build_src | |
E building extension "_test_ext_module_5407" sources | |
E f2py options: [] | |
E f2py:> /scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9/_test_ext_module_5407module.c | |
E creating /scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9 | |
E append_needs: unknown need 'int' | |
E Reading fortran codes... | |
E Reading file '/scratch/eb-ake-tmp/eb-4t9un5bf/tmpv125ocrk/tmpmulif8iz.f90' (format:free) | |
E Post-processing... | |
E Block: _test_ext_module_5407 | |
E Block: gh17797 | |
E Block: f | |
E Post-processing (stage 2)... | |
E Building modules... | |
E Constructing call-back function "cb_f_in_gh17797__user__routines" | |
E def f(e_0_err): return r | |
E Building module "_test_ext_module_5407"... | |
E Creating wrapper for Fortran function "gh17797"("gh17797")... | |
E Constructing wrapper function "gh17797"... | |
E r = gh17797(f,y,[f_extra_args]) | |
E Wrote C/API module "_test_ext_module_5407" to file "/scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9/_test_ext_module_5407module.c" | |
E Fortran 90 wrappers are saved to "/scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.f90" | |
E adding '/scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9/fortranobject.c' to sources. | |
E adding '/scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9' to include_dirs. | |
E copying /scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.c -> /scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9 | |
E copying /scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.h -> /scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9 | |
E adding '/scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.f90' to sources. | |
E build_src: building npy-pkg config files | |
E running build_ext | |
E customize UnixCCompiler | |
E C compiler: icc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC -O1 -xHost -fp-speculation=strict -fp-model strict -fPIC -I/hpc2n/eb/software/imkl/2021.2.0-iimpi-2021a/mkl/2021.2.0/include -fPIC | |
E | |
E creating /scratch/eb-ake-tmp/eb-4t9un5bf/tmpolphnekf/scratch | |
E creating /scratch/eb-ake-tmp/eb-4t9un5bf/tmpolphnekf/scratch/eb-ake-tmp | |
E creating /scratch/eb-ake-tmp/eb-4t9un5bf/tmpolphnekf/scratch/eb-ake-tmp/eb-4t9un5bf | |
E creating /scratch/eb-ake-tmp/eb-4t9un5bf/tmpolphnekf/scratch/eb-ake-tmp/eb-4t9un5bf/tmpolphnekf | |
E compile options: '-MMD -MF /scratch/eb-ake-tmp/eb-4t9un5bf/tmpolphnekf/file.c.d -c' | |
E icc: /scratch/eb-ake-tmp/eb-4t9un5bf/tmpolphnekf/file.c | |
E icc: command line warning #10148: option '-Wno-unused-result' not supported | |
E icc: command line warning #10121: overriding '-march=native' with '-march=native' | |
E icc: command line warning #10121: overriding '-march=native' with '-xHost' | |
E Command-line warning #1678: cannot enable speculation unless fenv_access and exception_semantics are disabled | |
E | |
E customize UnixCCompiler using build_ext | |
E get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' | |
E customize Gnu95FCompiler | |
E Found executable /cvmfs/ebsw.hpc2n.umu.se/amd64_ubuntu2004_bdw/software/intel-compilers/2021.2.0/compiler/2021.2.0/linux/bin/intel64/ifort | |
E Could not locate executable icc -shared | |
E Found executable /cvmfs/ebsw.hpc2n.umu.se/amd64_ubuntu2004_bdw/software/GCCcore/10.3.0/bin/gfortran | |
E customize IntelFCompiler | |
E customize LaheyFCompiler | |
E customize PGroupFCompiler | |
E customize NVHPCFCompiler | |
E customize AbsoftFCompiler | |
E customize NAGFCompiler | |
E customize VastFCompiler | |
E customize CompaqFCompiler | |
E customize IntelItaniumFCompiler | |
E customize IntelEM64TFCompiler | |
E customize IntelEM64TFCompiler | |
E customize IntelEM64TFCompiler using build_ext | |
E building '_test_ext_module_5407' extension | |
E compiling C sources | |
E C compiler: icc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC -O1 -xHost -fp-speculation=strict -fp-model strict -fPIC -I/hpc2n/eb/software/imkl/2021.2.0-iimpi-2021a/mkl/2021.2.0/include -fPIC | |
E | |
E creating /scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/scratch | |
E creating /scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/scratch/eb-ake-tmp | |
E creating /scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/scratch/eb-ake-tmp/eb-4t9un5bf | |
E creating /scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa | |
E creating /scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9 | |
E compile options: '-DNPY_DISABLE_OPTIMIZATION=1 -I/scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9 -I/scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/core/include -I/hpc2n/eb/software/Python/3.9.5-GCCcore-10.3.0/include/python3.9 -c' | |
E icc: /scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9/_test_ext_module_5407module.c | |
E icc: /scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9/fortranobject.c | |
E icc: command line warning #10148: option '-Wno-unused-result' not supported | |
E icc: command line warning #10148: option '-Wno-unused-result' not supported | |
E icc: command line warning #10121: overriding '-march=native' with '-march=native' | |
E icc: command line warning #10121: overriding '-march=native' with '-march=native' | |
E icc: command line warning #10121: overriding '-march=native' with '-xHost' | |
E icc: command line warning #10121: overriding '-march=native' with '-xHost' | |
E Command-line warning #1678: cannot enable speculation unless fenv_access and exception_semantics are disabled | |
E Command-line warning #1678: cannot enable speculation unless fenv_access and exception_semantics are disabled | |
E | |
E | |
E In file included from /scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h(12), | |
E from /scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h(4), | |
E from /scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9/fortranobject.h(13), | |
E from /scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9/_test_ext_module_5407module.c(16): | |
E /scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h(84): warning #2650: attributes ignored here | |
E NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), | |
E ^ | |
E | |
E In file included from /scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h(12), | |
E from /scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h(4), | |
E from /scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9/fortranobject.h(13), | |
E from /scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9/fortranobject.c(2): | |
E /scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h(84): warning #2650: attributes ignored here | |
E NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), | |
E ^ | |
E | |
E In file included from /scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h(1944), | |
E from /scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h(12), | |
E from /scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h(4), | |
E from /scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9/fortranobject.h(13), | |
E from /scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9/_test_ext_module_5407module.c(16): | |
E /scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h(17): warning #1224: #warning directive: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" | |
E #warning "Using deprecated NumPy API, disable it with " \ | |
E ^ | |
E | |
E In file included from /scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h(1944), | |
E from /scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h(12), | |
E from /scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h(4), | |
E from /scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9/fortranobject.h(13), | |
E from /scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9/fortranobject.c(2): | |
E /scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h(17): warning #1224: #warning directive: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" | |
E #warning "Using deprecated NumPy API, disable it with " \ | |
E ^ | |
E | |
E compiling Fortran sources | |
E Fortran f77 compiler: ifort -FI -fPIC -O1 -xHost -fp-speculation=strict -fp-model strict -fPIC -fp-model strict -O1 -qopenmp | |
E Fortran f90 compiler: ifort -FR -O1 -xHost -fp-speculation=strict -fp-model strict -fPIC -fPIC -O1 -xHost -fp-speculation=strict -fp-model strict -fPIC -fp-model strict -O1 -qopenmp | |
E Fortran fix compiler: ifort -FI -O1 -xHost -fp-speculation=strict -fp-model strict -fPIC -fPIC -O1 -xHost -fp-speculation=strict -fp-model strict -fPIC -fp-model strict -O1 -qopenmp | |
E creating /scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/scratch/eb-ake-tmp/eb-4t9un5bf/tmpv125ocrk | |
E compile options: '-I/scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9 -I/scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/core/include -I/hpc2n/eb/software/Python/3.9.5-GCCcore-10.3.0/include/python3.9 -c' | |
E ifort:f90: /scratch/eb-ake-tmp/eb-4t9un5bf/tmpv125ocrk/tmpmulif8iz.f90 | |
E ifort: command line warning #10121: overriding '-xHost' with '-xHost' | |
E ifort:f90: /scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.f90 | |
E ifort: command line warning #10121: overriding '-xHost' with '-xHost' | |
E /scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.f90(12): error #6428: This name has already been used as a dummy procedure name. [F] | |
E external f | |
E -------------------^ | |
E /scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.f90(23): error #6633: The type of the actual argument differs from the type of the dummy argument. [F] | |
E gh17797f2pywrap = gh17797(f, y) | |
E --------------------------------^ | |
E compilation aborted for /scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.f90 (code 1) | |
E error: Command "ifort -FR -O1 -xHost -fp-speculation=strict -fp-model strict -fPIC -fPIC -O1 -xHost -fp-speculation=strict -fp-model strict -fPIC -fp-model strict -O1 -qopenmp -I/scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9 -I/scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/core/include -I/hpc2n/eb/software/Python/3.9.5-GCCcore-10.3.0/include/python3.9 -c -c /scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.f90 -o /scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/scratch/eb-ake-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.o" failed with exit status 1 | |
base = '/scratch/eb-ake-tmp/eb-4t9un5bf/tmpv125ocrk/tmpmulif8iz' | |
cmd = ['/hpc2n/eb/software/Python/3.9.5-GCCcore-10.3.0/bin/python', '-c', "import sys; sys.path = ['/scratch/eb-ake-tmp/eb-4...r/lib/python3.9/site-packages']; import numpy.f2py as f2py2e; f2py2e.main()", '-c', '-m', '_test_ext_module_5407', ...] | |
code = "import sys; sys.path = ['/scratch/eb-ake-tmp/eb-4t9un5bf/tmpv125ocrk', '/scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/l...e/pytest-0/test_abstract_scalars0/installdir/lib/python3.9/site-packages']; import numpy.f2py as f2py2e; f2py2e.main()" | |
cwd = '/scratch/eb-ake/SciPybundle/2021.05/intel-2021a/numpy' | |
d = '/scratch/eb-ake-tmp/eb-4t9un5bf/tmpv125ocrk' | |
dst = '/scratch/eb-ake-tmp/eb-4t9un5bf/tmpv125ocrk/tmpmulif8iz.f90' | |
dst_sources = ['/scratch/eb-ake-tmp/eb-4t9un5bf/tmpv125ocrk/tmpmulif8iz.f90'] | |
err = None | |
ext = '.f90' | |
f2py_opts = ['-c', '-m', '_test_ext_module_5407', '/scratch/eb-ake-tmp/eb-4t9un5bf/tmpv125ocrk/tmpmulif8iz.f90'] | |
f2py_sources = ['/scratch/eb-ake-tmp/eb-4t9un5bf/tmpv125ocrk/tmpmulif8iz.f90'] | |
fn = '/scratch/eb-ake-tmp/eb-4t9un5bf/tmpv125ocrk/tmpmulif8iz.f90' | |
module_name = '_test_ext_module_5407' | |
only = [] | |
options = [] | |
out = b'running build\nrunning config_cc\nunifing config_cc, config, build_clib, build_ext, build commands --compiler option...ke-tmp/eb-4t9un5bf/tmpz6xxeaaa/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.o" failed with exit status 1\n' | |
p = <Popen: returncode: 1 args: ['/hpc2n/eb/software/Python/3.9.5-GCCcore-10.3.0...> | |
skip = [] | |
source_files = ['/scratch/eb-ake-tmp/eb-4t9un5bf/tmpmulif8iz.f90'] | |
/scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/f2py/tests/util.py:133: RuntimeError | |
================================================================== FAILURES =================================================================== | |
___________________________________________________ TestMatrixPower.test_large_power[dt15] ____________________________________________________ | |
self = <numpy.linalg.tests.test_linalg.TestMatrixPower object at 0x7f3fa1f40fa0>, dt = dtype('complex256') | |
def test_large_power(self, dt): | |
rshft = self.rshft_1.astype(dt) | |
> assert_equal( | |
matrix_power(rshft, 2**100 + 2**10 + 2**5 + 0), self.rshft_0) | |
E AssertionError: | |
E Arrays are not equal | |
E | |
E x and y nan location mismatch: | |
E x: array([[nan+nanj, nan+nanj, nan+nanj, nan+nanj], | |
E [nan+nanj, nan+nanj, nan+nanj, nan+nanj], | |
E [nan+nanj, nan+nanj, nan+nanj, nan+nanj], | |
E [nan+nanj, nan+nanj, nan+nanj, nan+nanj]], dtype=complex256) | |
E y: array([[1., 0., 0., 0.], | |
E [0., 1., 0., 0.], | |
E [0., 0., 1., 0.], | |
E [0., 0., 0., 1.]]) | |
dt = dtype('complex256') | |
rshft = array([[0.+0.j, 0.+0.j, 0.+0.j, 1.+0.j], | |
[1.+0.j, 0.+0.j, 0.+0.j, 0.+0.j], | |
[0.+0.j, 1.+0.j, 0.+0.j, 0.+0.j], | |
[0.+0.j, 0.+0.j, 1.+0.j, 0.+0.j]], dtype=complex256) | |
self = <numpy.linalg.tests.test_linalg.TestMatrixPower object at 0x7f3fa1f40fa0> | |
/scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/linalg/tests/test_linalg.py:999: AssertionError | |
_________________________________________________ TestNorm_NonSystematic.test_longdouble_norm _________________________________________________ | |
self = <numpy.linalg.tests.test_linalg.TestNorm_NonSystematic object at 0x7f3fa0d2ea30> | |
def test_longdouble_norm(self): | |
# Non-regression test: p-norm of longdouble would previously raise | |
# UnboundLocalError. | |
x = np.arange(10, dtype=np.longdouble) | |
> old_assert_almost_equal(norm(x, ord=3), 12.65, decimal=2) | |
E AssertionError: | |
E Arrays are not almost equal to 2 decimals | |
E ACTUAL: nan | |
E DESIRED: 12.65 | |
self = <numpy.linalg.tests.test_linalg.TestNorm_NonSystematic object at 0x7f3fa0d2ea30> | |
x = array([0., 1., 2., 3., 4., 5., 6., 7., 8., 9.], dtype=float128) | |
/scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/linalg/tests/test_linalg.py:1513: AssertionError | |
________________________________________________ TestNorm_NonSystematic.test_complex_high_ord _________________________________________________ | |
self = <numpy.linalg.tests.test_linalg.TestNorm_NonSystematic object at 0x7f3fa0d38af0> | |
def test_complex_high_ord(self): | |
# gh-4156 | |
d = np.empty((2,), dtype=np.clongdouble) | |
d[0] = 6 + 7j | |
d[1] = -6 + 7j | |
res = 11.615898132184 | |
> old_assert_almost_equal(np.linalg.norm(d, ord=3), res, decimal=10) | |
E AssertionError: | |
E Arrays are not almost equal to 10 decimals | |
E ACTUAL: nan | |
E DESIRED: 11.615898132184 | |
d = array([ 6.+7.j, -6.+7.j], dtype=complex256) | |
res = 11.615898132184 | |
self = <numpy.linalg.tests.test_linalg.TestNorm_NonSystematic object at 0x7f3fa0d38af0> | |
/scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/linalg/tests/test_linalg.py:1527: AssertionError | |
============================================================== warnings summary =============================================================== | |
../../../../../../hpc2n/eb/software/Python/3.9.5-GCCcore-10.3.0/lib/python3.9/site-packages/nose/importer.py:12 | |
/hpc2n/eb/software/Python/3.9.5-GCCcore-10.3.0/lib/python3.9/site-packages/nose/importer.py:12: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses | |
from imp import find_module, load_module, acquire_lock, release_lock | |
lib/tests/test_twodim_base.py::test_tril_triu_ndim2 | |
/scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/testing/_private/utils.py:770: RuntimeWarning: invalid value encountered in equal | |
func=lambda xy: xy == +inf, | |
linalg/tests/test_linalg.py::TestMatrixPower::test_large_power[dt15] | |
/scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/linalg/linalg.py:661: RuntimeWarning: invalid value encountered in matmul | |
z = a if z is None else fmatmul(z, z) | |
linalg/tests/test_linalg.py::TestNorm_NonSystematic::test_longdouble_norm | |
/scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/linalg/linalg.py:2567: RuntimeWarning: invalid value encountered in power | |
absx **= ord | |
linalg/tests/test_linalg.py::TestNorm_NonSystematic::test_longdouble_norm | |
/scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/linalg/linalg.py:2568: RuntimeWarning: invalid value encountered in reduce | |
ret = add.reduce(absx, axis=axis, keepdims=keepdims) | |
linalg/tests/test_linalg.py::TestNorm_NonSystematic::test_complex_high_ord | |
/scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages/numpy/linalg/linalg.py:2569: RuntimeWarning: invalid value encountered in longdouble_scalars | |
ret **= (1 / ord) | |
-- Docs: https://docs.pytest.org/en/stable/warnings.html | |
=========================================================== short test summary info =========================================================== | |
FAILED linalg/tests/test_linalg.py::TestMatrixPower::test_large_power[dt15] - AssertionError: | |
FAILED linalg/tests/test_linalg.py::TestNorm_NonSystematic::test_longdouble_norm - AssertionError: | |
FAILED linalg/tests/test_linalg.py::TestNorm_NonSystematic::test_complex_high_ord - AssertionError: | |
ERROR f2py/tests/test_callback.py::TestF90Callback::test_gh17797 - RuntimeError: Running f2py failed: ['-m', '_test_ext_module_5407', '/scra... | |
================= 3 failed, 12562 passed, 456 skipped, 1208 deselected, 21 xfailed, 6 warnings, 1 error in 197.90s (0:03:17) ================== | |
(at easybuild/tools/run.py:577 in parse_cmd_output) | |
== 2021-10-21 11:25:47,171 build_log.py:265 INFO ... (took 7 mins 21 secs) | |
== 2021-10-21 11:25:47,171 build_log.py:265 INFO ... (took 7 mins 29 secs) | |
== 2021-10-21 11:25:47,171 config.py:635 DEBUG software install path as specified by 'installpath' and 'subdir_software': /home/a/ake/easybuild/software | |
== 2021-10-21 11:25:47,171 filetools.py:1963 INFO Removing lock /home/a/ake/easybuild/software/.locks/_home_a_ake_easybuild_software_SciPy-bundle_2021.05-intel-2021a.lock... | |
== 2021-10-21 11:25:47,181 filetools.py:379 INFO Path /home/a/ake/easybuild/software/.locks/_home_a_ake_easybuild_software_SciPy-bundle_2021.05-intel-2021a.lock successfully removed. | |
== 2021-10-21 11:25:47,182 filetools.py:1967 INFO Lock removed: /home/a/ake/easybuild/software/.locks/_home_a_ake_easybuild_software_SciPy-bundle_2021.05-intel-2021a.lock | |
== 2021-10-21 11:25:47,182 easyblock.py:3753 WARNING build failed (first 300 chars): cmd "export PYTHONPATH=/scratch/eb-ake-tmp/eb-4t9un5bf/tmpzo1m9_n8/lib/python3.9/site-packages:$PYTHONPATH && unset LDFLAGS && cd .. && /hpc2n/eb/software/Python/3.9.5-GCCcore-10.3.0/bin/python -c 'import sys; import numpy; sys.exit(not numpy.test(verbose=2))' " exited with exit code 1 and output: | |
== 2021-10-21 11:25:47,187 easyblock.py:307 INFO Closing log for application name SciPy-bundle version 2021.05 |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment