Daniel Manson d1manson

## monobrow.py
# -*- coding: utf-8 -*-
"""
The purpose of this module is to do monoprocessing for a single package when using multiprocessing.
It is designed with matplotlib in mind, but most of it is pretty general.

The idea is that you may have a block of code that you want to run in parallel
processes, but because of some "small" thing (i.e. something that isn't computationally expensive)
you can't do it easily without some major, ugly, alterations to your existing code.  Monobrow.py
injects all the ugly stuff for you at the point you launch the processes, so you don't need to
alter your base code at all.

## lazydict.py
# -*- coding: utf-8 -*-
"""
Created on Tue Feb 25 13:26:15 2014

@author: daniel
"""
from functools import partial

class LazyDictProperty(object):
    """

## exception_aggregator.py
# -*- coding: utf-8 -*-
"""
This works but it's pretty ugly in places, the html/str representation specifically.
"""

from __future__ import print_function

import sys
import warnings
from traceback import format_list, extract_tb, extract_stack

## theta_mle_climer.py
# -*- coding: utf-8 -*-
"""
Adapted from the Matlab code acompanying the following paper:

Climer, J. R., DiTullio, R., Newman, E. L., Hasselmo, M. E., Eden, U. T.
(2014), Examination of rhythmicity of extracellularly recorded neurons
in the entorhinal cortex. Hippocampus, Epub ahead of print.
doi: 10.1002/hipo.22383.

Matlab code take from: github.com/jrclimer/mle_rhythmicity, on 02-feb-2015.

## accumarray.py
"""
!!!!!!SUPERSEDED BY ACTUAL REPOSITORY!!!!!!

  https://github.com/ml31415/accumarray

!!!!!!SUPERSEDED BY ACTUAL REPOSITORY!!!!!!
"""

import numpy as np

## pearsonr_confidence.py
# -*- coding: utf-8 -*-
"""
Module contents:
    # pearsonr_permutations
    # pearsonr_sign_bootstrap
    # permute_multi <-- used by pearsonr_permutations
DM, Feb 2015.
"""

import numpy as np

## np_indexing_tools.py
import numpy as np

def repeat_ind(n):
    """By example:

        #    0  1  2  3  4  5  6  7  8
        n = [0, 0, 3, 0, 0, 2, 0, 2, 1]
        res = [2, 2, 2, 5, 5, 7, 7, 8]

    That is the input specifies how many times to repeat the given index.

## list_views.py
# -*- coding: utf-8 -*-
"""
Module contents:

    # index_view
    # masked_list

@author: daniel
"""

## append_docstring.py
import inspect

def append_docstring(*others):
    """
    Appends one or more other objects' docstrings to the decorated function.
    Title, location and args info is provided in addition to basic docstring.

    TODO: Compare the location of `other` to `foo` and only show the
            neccessary suffix.  Also, try and get the args/kwargs and
            type printed nicely like spyder does.

## test.html
<html>
<head>
<script src="bower_components/webcomponentsjs/webcomponents-lite.js"></script>
<link rel="import" href="bower_components/polymer/polymer.html">

<dom-module id="x-child">
<template>
<div style="background:#ccc;display: inline-block;">
	prop_read_write: <span>[[prop_read_write]]</span><br>
	prop_read_only: <span>[[prop_read_only]]</span><br>
	# -- coding: utf-8 --
	"""
	The purpose of this module is to do monoprocessing for a single package when using multiprocessing.
	It is designed with matplotlib in mind, but most of it is pretty general.

	The idea is that you may have a block of code that you want to run in parallel
	processes, but because of some "small" thing (i.e. something that isn't computationally expensive)
	you can't do it easily without some major, ugly, alterations to your existing code. Monobrow.py
	injects all the ugly stuff for you at the point you launch the processes, so you don't need to
	alter your base code at all.
	# -- coding: utf-8 --
	"""
	Created on Tue Feb 25 13:26:15 2014

	@author: daniel
	"""
	from functools import partial

	class LazyDictProperty(object):
	"""
	# -- coding: utf-8 --
	"""
	This works but it's pretty ugly in places, the html/str representation specifically.
	"""

	from __future__ import print_function

	import sys
	import warnings
	from traceback import format_list, extract_tb, extract_stack
	# -- coding: utf-8 --
	"""
	Adapted from the Matlab code acompanying the following paper:

	Climer, J. R., DiTullio, R., Newman, E. L., Hasselmo, M. E., Eden, U. T.
	(2014), Examination of rhythmicity of extracellularly recorded neurons
	in the entorhinal cortex. Hippocampus, Epub ahead of print.
	doi: 10.1002/hipo.22383.

	Matlab code take from: github.com/jrclimer/mle_rhythmicity, on 02-feb-2015.
	"""
	!!!!!!SUPERSEDED BY ACTUAL REPOSITORY!!!!!!

	https://github.com/ml31415/accumarray

	!!!!!!SUPERSEDED BY ACTUAL REPOSITORY!!!!!!
	"""

	import numpy as np
	# -- coding: utf-8 --
	"""
	Module contents:
	# pearsonr_permutations
	# pearsonr_sign_bootstrap
	# permute_multi <-- used by pearsonr_permutations
	DM, Feb 2015.
	"""

	import numpy as np
	import numpy as np

	def repeat_ind(n):
	"""By example:

	# 0 1 2 3 4 5 6 7 8
	n = [0, 0, 3, 0, 0, 2, 0, 2, 1]
	res = [2, 2, 2, 5, 5, 7, 7, 8]

	That is the input specifies how many times to repeat the given index.
	# -- coding: utf-8 --
	"""
	Module contents:

	# index_view
	# masked_list

	@author: daniel
	"""
	import inspect

	def append_docstring(*others):
	"""
	Appends one or more other objects' docstrings to the decorated function.
	Title, location and args info is provided in addition to basic docstring.

	TODO: Compare the location of `other` to `foo` and only show the
	neccessary suffix. Also, try and get the args/kwargs and
	type printed nicely like spyder does.
	<html>
	<head>
	<script src="bower_components/webcomponentsjs/webcomponents-lite.js"></script>
	<link rel="import" href="bower_components/polymer/polymer.html">

	<dom-module id="x-child">
	<template>
	<div style="background:#ccc;display: inline-block;">
	prop_read_write: <span>[[prop_read_write]]</span><br>
	prop_read_only: <span>[[prop_read_only]]</span><br>