Created
June 22, 2022 09:11
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Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/coreneuron/-/pipelines/61703 (:white_check_mark:) running on GitHub PR BlueBrain/CoreNeuron#830.
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886532:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886532:resolve_secrets [0Ksection_start:1655886532:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor830082185, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61703, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272566 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J272566_PROD_P112_CP6_C10 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563717 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J272566_PROD_P112_CP6_C10 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --ntasks=2 --jobid=563717 --cpus-per-task=8 --mem=76G | |
| section_end:1655886533:prepare_executor [0Ksection_start:1655886533:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i5n16 via bbpv1.epfl.ch... | |
| section_end:1655886537:prepare_script [0Ksection_start:1655886537:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886537:get_sources [0Ksection_start:1655886537:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:coreneuron:mod2c:intel-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=191571 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1655886539:restore_cache [0Ksection_start:1655886539:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (272553)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=191844 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272553 responseStatus[0;m=200 OK token[0;m=ZdRCG-CU | |
| section_end:1655886540:download_artifacts [0Ksection_start:1655886540:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272566/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272566/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272566/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272566/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272566/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703/J272566_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron%intel +tests~legacy-unit build_type=Debug | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be iw7f7wskesewfnyvmtmk3lfqta3e4jpw | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563717/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563717/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:29:29 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.14 / 0.51 (28.31 %) | |
| Files: 1473 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'iw7f7wskesewfnyvmtmk3lfqta3e4jpw' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron%intel~legacy-unit+tests build_type=Debug | |
| Concretized | |
| -------------------------------- | |
| - iw7f7ws coreneuron@develop%intel@2021.4.0~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| - dwdch6b ^bison@3.8.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] dl7pfht ^boost@1.78.0%intel@2021.4.0+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| - z3q5f3x ^cmake@3.21.4%intel@2021.4.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| - s4ueg72 ^flex@2.6.3%intel@2021.4.0+lex~nls arch=linux-rhel7-skylake | |
| [^] 3narjkw ^hpe-mpi@2.25.hmpt%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] podtqd6 ^libsonata-report@1.1.1%intel@2021.4.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ofveh3j ^hdf5@1.10.7%intel@2021.4.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] xys6npz ^pkgconf@1.8.0%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] e7w5nez ^zlib@1.2.11%intel@2021.4.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] kxkrl2g ^spdlog@1.9.2%intel@2021.4.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] unnpvpo ^fmt@8.1.1%intel@2021.4.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| - 6ggc5yr ^ninja@1.10.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] f27a7nn ^python@3.9.7%intel@2021.4.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] gdhqypa ^reportinglib@2.5.6%intel@2021.4.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-dwdch6bmdeclr2novthsywtrryotawwz) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-dl7pfhtsvyaq3273gr2g3l5vr37eeydc) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-z3q5f3xwpuibd3qbgdscqmu3efarbu42) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-s4ueg72j7l6vkdyvfxj2tweo7v7s3otx) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-3narjkwjh6i2jr3zl3g5wdjlqi52hkwh) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/pkgconf-1.8.0-xys6np | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-e7w5nezpwf572epfhbosqfzboztysout) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-6ggc5yre7qddwxdjmn7sfptpdoiy4dtp) | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-f27a7nnhppeztxijpispnaedcfo2vjxi) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/fmt-8.1.1-unnpvp | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/reportinglib-2.5.6-gdhqyp | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/hdf5-1.10.7-ofveh3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/spdlog-1.9.2-kxkrl2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/libsonata-report-1.1.1-podtqd | |
| ==> Installing coreneuron-develop-iw7f7wskesewfnyvmtmk3lfqta3e4jpw | |
| ==> No binary for coreneuron-develop-iw7f7wskesewfnyvmtmk3lfqta3e4jpw found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703, but it is owned by 0 | |
| ==> No patches needed for coreneuron | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| ==> coreneuron: Successfully installed coreneuron-develop-iw7f7wskesewfnyvmtmk3lfqta3e4jpw | |
| Fetch: 4.07s. Build: 41.41s. Total: 45.48s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/software/install_intel-2021.4.0-skylake/coreneuron-develop-iw7f7w | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563717/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563717/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:31:02 2022 | |
| Hits: 107 / 112 (95.54 %) | |
| Direct: 89 / 112 (79.46 %) | |
| Preprocessed: 18 / 23 (78.26 %) | |
| Misses: 5 | |
| Direct: 23 | |
| Preprocessed: 5 | |
| Uncacheable: 18 | |
| Primary storage: | |
| Hits: 196 / 224 (87.50 %) | |
| Misses: 28 | |
| Cache size (GB): 0.15 / 0.51 (28.44 %) | |
| Files: 1483 | |
| Uncacheable: | |
| Called for linking: 15 | |
| No input file: 3 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1655886663:step_script [0Ksection_start:1655886663:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:coreneuron:mod2c:intel-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=199545 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Amod2c%3Aintel-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1655886671:archive_cache [0Ksection_start:1655886671:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=200390 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272566 responseStatus[0;m=201 Created token[0;m=qtyQzDND | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=200456 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272566 responseStatus[0;m=201 Created token[0;m=qtyQzDND | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=200527 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=272566 responseStatus[0;m=201 Created token[0;m=qtyQzDND | |
| section_end:1655886673:upload_artifacts_on_success [0Ksection_start:1655886673:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655886673:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886530:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886530:resolve_secrets [0Ksection_start:1655886530:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor013036844, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61703, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272560 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J272560_PROD_P112_CP3_C7 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563714 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J272560_PROD_P112_CP3_C7 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --ntasks=2 --jobid=563714 --cpus-per-task=8 --mem=76G | |
| section_end:1655886534:prepare_executor [0Ksection_start:1655886534:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i5n23 via bbpv1.epfl.ch... | |
| section_end:1655886536:prepare_script [0Ksection_start:1655886536:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886536:get_sources [0Ksection_start:1655886536:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:coreneuron:mod2c:nvhpc:acc:unified-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=200405 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1655886538:restore_cache [0Ksection_start:1655886538:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (272553)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=200707 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272553 responseStatus[0;m=200 OK token[0;m=ZdRCG-CU | |
| section_end:1655886539:download_artifacts [0Ksection_start:1655886539:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272560/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272560/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272560/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272560/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272560/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703/J272560_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron%nvhpc +gpu+unified+openmp+tests~legacy-unit build_type=RelWithDebInfo | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be 7xhnxahexeffbne3dpzxwo5qcrumhnar | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563714/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563714/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:29:22 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.13 / 0.51 (24.75 %) | |
| Files: 1689 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: '7xhnxahexeffbne3dpzxwo5qcrumhnar' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron%nvhpc+gpu~legacy-unit+openmp+tests+unified build_type=RelWithDebInfo | |
| Concretized | |
| -------------------------------- | |
| - 7xhnxah coreneuron@develop%nvhpc@22.3~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl+openmp~profile+report+shared~sympy~sympyopt+tests+unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - 6s6wcfe ^bison@3.8.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] vn2t5vi ^boost@1.78.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| - ucwiakr ^cmake@3.21.4%nvhpc@22.3~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [^] gi5x2dn ^cuda@11.6.1%nvhpc@22.3~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| - ajxdymq ^flex@2.6.3%nvhpc@22.3+lex~nls arch=linux-rhel7-skylake | |
| [^] pjmdwuu ^hpe-mpi@2.25.hmpt%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] 6d2jeoj ^libsonata-report@1.1.1%nvhpc@22.3~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] tbfoeg7 ^hdf5@1.10.7%nvhpc@22.3+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 6dfyugs ^pkgconf@1.8.0%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] h7lotu6 ^zlib@1.2.11%nvhpc@22.3+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] v5zxpfc ^spdlog@1.9.2%nvhpc@22.3~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] jeloytj ^fmt@8.1.1%nvhpc@22.3~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| - cp3ofsp ^ninja@1.10.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] f62u3oh ^python@3.9.7%nvhpc@22.3+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] bdkvweu ^reportinglib@2.5.6%nvhpc@22.3~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-6s6wcfeanp2mkdib4c3n3ivkcuosopgm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-vn2t5viljvtb5wyfhgmx57txyeiznxo4) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-ucwiakreeghdgbo22kbqqhgnnlwxqtnn) | |
| ==> cuda@11.6.1 : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-gi5x2dn47i7nv76flbq7aatllxpaqmjp) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-ajxdymqhnzqgeuhvk5nu5zfymzq35n6i) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-pjmdwuu36ioiwqyrg6lrj7nrq3waqjj2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/pkgconf-1.8.0-6dfyug | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-h7lotu6jszcvumwucry2y5jnhvxw5x2d) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-cp3ofspgkdqaqih5vrhotmdwvkozfswp) | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-f62u3ohchswt5q2b63chawohzqrl6wvy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/fmt-8.1.1-jeloyt | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/reportinglib-2.5.6-bdkvwe | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/hdf5-1.10.7-tbfoeg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/spdlog-1.9.2-v5zxpf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/libsonata-report-1.1.1-6d2jeo | |
| ==> Installing coreneuron-develop-7xhnxahexeffbne3dpzxwo5qcrumhnar | |
| ==> No binary for coreneuron-develop-7xhnxahexeffbne3dpzxwo5qcrumhnar found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703, but it is owned by 0 | |
| ==> No patches needed for coreneuron | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| ==> coreneuron: Successfully installed coreneuron-develop-7xhnxahexeffbne3dpzxwo5qcrumhnar | |
| Fetch: 4.13s. Build: 54.45s. Total: 58.58s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/software/install_nvhpc-22.3-skylake/coreneuron-develop-7xhnxa | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563714/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563714/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:31:09 2022 | |
| Hits: 107 / 115 (93.04 %) | |
| Direct: 89 / 115 (77.39 %) | |
| Preprocessed: 18 / 26 (69.23 %) | |
| Misses: 8 | |
| Direct: 26 | |
| Preprocessed: 8 | |
| Uncacheable: 19 | |
| Primary storage: | |
| Hits: 196 / 230 (85.22 %) | |
| Misses: 34 | |
| Cache size (GB): 0.13 / 0.51 (24.73 %) | |
| Files: 1705 | |
| Uncacheable: | |
| Called for linking: 16 | |
| No input file: 3 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1655886671:step_script [0Ksection_start:1655886671:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:coreneuron:mod2c:nvhpc:acc:unified-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=207933 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Amod2c%3Anvhpc%3Aacc%3Aunified-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1655886677:archive_cache [0Ksection_start:1655886677:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=208326 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272560 responseStatus[0;m=201 Created token[0;m=epz1h4Bs | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=208379 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272560 responseStatus[0;m=201 Created token[0;m=epz1h4Bs | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=208431 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=272560 responseStatus[0;m=201 Created token[0;m=epz1h4Bs | |
| section_end:1655886678:upload_artifacts_on_success [0Ksection_start:1655886678:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655886679:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886529:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886529:resolve_secrets [0Ksection_start:1655886529:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor727978557, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61703, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272557 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J272557_PROD_P112_CP1_C1 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563712 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J272557_PROD_P112_CP1_C1 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --ntasks=2 --jobid=563712 --cpus-per-task=8 --mem=76G | |
| section_end:1655886530:prepare_executor [0Ksection_start:1655886530:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i5n23 via bbpv1.epfl.ch... | |
| section_end:1655886533:prepare_script [0Ksection_start:1655886533:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886533:get_sources [0Ksection_start:1655886533:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:coreneuron:mod2c:nvhpc:acc-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=199750 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1655886535:restore_cache [0Ksection_start:1655886535:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (272553)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=199976 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272553 responseStatus[0;m=200 OK token[0;m=ZdRCG-CU | |
| section_end:1655886536:download_artifacts [0Ksection_start:1655886536:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272557/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272557/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272557/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272557/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272557/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703/J272557_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron%nvhpc +gpu+openmp+tests~legacy-unit build_type=RelWithDebInfo | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be 6qi7xiczl6qfolioernjyooskeukbk4m | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563712/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563712/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:29:20 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.13 / 0.51 (24.72 %) | |
| Files: 1672 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: '6qi7xiczl6qfolioernjyooskeukbk4m' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron%nvhpc+gpu~legacy-unit+openmp+tests build_type=RelWithDebInfo | |
| Concretized | |
| -------------------------------- | |
| - 6qi7xic coreneuron@develop%nvhpc@22.3~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl+openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - 6s6wcfe ^bison@3.8.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] vn2t5vi ^boost@1.78.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| - ucwiakr ^cmake@3.21.4%nvhpc@22.3~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [^] gi5x2dn ^cuda@11.6.1%nvhpc@22.3~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| - ajxdymq ^flex@2.6.3%nvhpc@22.3+lex~nls arch=linux-rhel7-skylake | |
| [^] pjmdwuu ^hpe-mpi@2.25.hmpt%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] 6d2jeoj ^libsonata-report@1.1.1%nvhpc@22.3~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] tbfoeg7 ^hdf5@1.10.7%nvhpc@22.3+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 6dfyugs ^pkgconf@1.8.0%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] h7lotu6 ^zlib@1.2.11%nvhpc@22.3+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] v5zxpfc ^spdlog@1.9.2%nvhpc@22.3~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] jeloytj ^fmt@8.1.1%nvhpc@22.3~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| - cp3ofsp ^ninja@1.10.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] f62u3oh ^python@3.9.7%nvhpc@22.3+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] bdkvweu ^reportinglib@2.5.6%nvhpc@22.3~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-6s6wcfeanp2mkdib4c3n3ivkcuosopgm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-vn2t5viljvtb5wyfhgmx57txyeiznxo4) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-ucwiakreeghdgbo22kbqqhgnnlwxqtnn) | |
| ==> cuda@11.6.1 : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-gi5x2dn47i7nv76flbq7aatllxpaqmjp) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-ajxdymqhnzqgeuhvk5nu5zfymzq35n6i) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-pjmdwuu36ioiwqyrg6lrj7nrq3waqjj2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/pkgconf-1.8.0-6dfyug | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-h7lotu6jszcvumwucry2y5jnhvxw5x2d) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-cp3ofspgkdqaqih5vrhotmdwvkozfswp) | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-f62u3ohchswt5q2b63chawohzqrl6wvy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/fmt-8.1.1-jeloyt | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/reportinglib-2.5.6-bdkvwe | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/hdf5-1.10.7-tbfoeg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/spdlog-1.9.2-v5zxpf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/libsonata-report-1.1.1-6d2jeo | |
| ==> Installing coreneuron-develop-6qi7xiczl6qfolioernjyooskeukbk4m | |
| ==> No binary for coreneuron-develop-6qi7xiczl6qfolioernjyooskeukbk4m found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703, but it is owned by 0 | |
| ==> No patches needed for coreneuron | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| ==> coreneuron: Successfully installed coreneuron-develop-6qi7xiczl6qfolioernjyooskeukbk4m | |
| Fetch: 4.56s. Build: 52.50s. Total: 57.06s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/software/install_nvhpc-22.3-skylake/coreneuron-develop-6qi7xi | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563712/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563712/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:31:06 2022 | |
| Hits: 107 / 115 (93.04 %) | |
| Direct: 89 / 115 (77.39 %) | |
| Preprocessed: 18 / 26 (69.23 %) | |
| Misses: 8 | |
| Direct: 26 | |
| Preprocessed: 8 | |
| Uncacheable: 19 | |
| Primary storage: | |
| Hits: 196 / 230 (85.22 %) | |
| Misses: 34 | |
| Cache size (GB): 0.13 / 0.51 (24.70 %) | |
| Files: 1688 | |
| Uncacheable: | |
| Called for linking: 16 | |
| No input file: 3 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1655886668:step_script [0Ksection_start:1655886668:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:coreneuron:mod2c:nvhpc:acc-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=207854 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Amod2c%3Anvhpc%3Aacc-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1655886675:archive_cache [0Ksection_start:1655886675:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=208093 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272557 responseStatus[0;m=201 Created token[0;m=rqsjQrsi | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=208135 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272557 responseStatus[0;m=201 Created token[0;m=rqsjQrsi | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=208180 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=272557 responseStatus[0;m=201 Created token[0;m=rqsjQrsi | |
| section_end:1655886676:upload_artifacts_on_success [0Ksection_start:1655886676:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655886677:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886766:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886766:resolve_secrets [0Ksection_start:1655886766:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor693236803, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61703, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272568 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J272568_PROD_P112_CP9_C14 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563737 | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J272568_PROD_P112_CP9_C14 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --ntasks=2 --jobid=563737 --cpus-per-task=8 --mem=76G | |
| section_end:1655886773:prepare_executor [0Ksection_start:1655886773:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i7n35 via bbpv1.epfl.ch... | |
| section_end:1655886777:prepare_script [0Ksection_start:1655886777:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886777:get_sources [0Ksection_start:1655886777:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:coreneuron:nmodl:intel-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=109863 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1655886779:restore_cache [0Ksection_start:1655886779:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:nmodl (272555)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=110070 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272555 responseStatus[0;m=200 OK token[0;m=gTYvi8Yu | |
| section_end:1655886780:download_artifacts [0Ksection_start:1655886780:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272568/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272568/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272568/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272568/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272568/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703/J272568_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron%intel +nmodl+tests~legacy-unit build_type=Debug ^hpe-mpi%gcc ^/4dzxcpsuksxgtuoesheax4sf76wrhkqb | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be rh5oq7ygplbbyryh6avavlwff7ieo23w | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563737/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563737/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:33:26 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.15 / 0.51 (28.95 %) | |
| Files: 1651 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'rh5oq7ygplbbyryh6avavlwff7ieo23w' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron%intel~legacy-unit+nmodl+tests build_type=Debug | |
| - ^hpe-mpi%gcc | |
| [+] ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - rh5oq7y coreneuron@develop%intel@2021.4.0~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| - dwdch6b ^bison@3.8.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] dl7pfht ^boost@1.78.0%intel@2021.4.0+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] 2qmvlfy ^cmake@3.21.4%gcc@11.2.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| - s4ueg72 ^flex@2.6.3%intel@2021.4.0+lex~nls arch=linux-rhel7-skylake | |
| [^] hyunzkn ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] lbajih4 ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] evtnqzd ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] r74vcyb ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7lotjqk ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| - 6ggc5yr ^ninja@1.10.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [+] 4dzxcps ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] atktt2p ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] e5qqxxq ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] jjl6cjc ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] z5kzef6 ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vt2or7v ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-dwdch6bmdeclr2novthsywtrryotawwz) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-dl7pfhtsvyaq3273gr2g3l5vr37eeydc) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-2qmvlfyylrv3t5ankluyr5cqey2nlfzd) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-s4ueg72j7l6vkdyvfxj2tweo7v7s3otx) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/fmt-8.1.1-7lotjq | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-6ggc5yre7qddwxdjmn7sfptpdoiy4dtp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/catch2-2.13.8-atktt2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/cli11-2.1.1-e5qqxx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/nlohmann-json-3.10.4-jjl6cj | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-r74vcy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pybind11-2.9.1-z5kzef | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1.1-lbajih | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.9-vt2or7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/software/install_gcc-11.2.0-skylake/nmodl-develop-4dzxcp | |
| ==> Installing coreneuron-develop-rh5oq7ygplbbyryh6avavlwff7ieo23w | |
| ==> No binary for coreneuron-develop-rh5oq7ygplbbyryh6avavlwff7ieo23w found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703, but it is owned by 0 | |
| ==> No patches needed for coreneuron | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| ==> coreneuron: Successfully installed coreneuron-develop-rh5oq7ygplbbyryh6avavlwff7ieo23w | |
| Fetch: 5.16s. Build: 37.64s. Total: 42.80s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/software/install_intel-2021.4.0-skylake/coreneuron-develop-rh5oq7 | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563737/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563737/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:35:01 2022 | |
| Hits: 86 / 91 (94.51 %) | |
| Direct: 77 / 91 (84.62 %) | |
| Preprocessed: 9 / 14 (64.29 %) | |
| Misses: 5 | |
| Direct: 14 | |
| Preprocessed: 5 | |
| Uncacheable: 16 | |
| Primary storage: | |
| Hits: 163 / 182 (89.56 %) | |
| Misses: 19 | |
| Cache size (GB): 0.15 / 0.51 (28.98 %) | |
| Files: 1670 | |
| Uncacheable: | |
| Called for linking: 13 | |
| No input file: 3 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1655886902:step_script [0Ksection_start:1655886902:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:coreneuron:nmodl:intel-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=114357 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Anmodl%3Aintel-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1655886909:archive_cache [0Ksection_start:1655886909:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=114430 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272568 responseStatus[0;m=201 Created token[0;m=z41wNgCk | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=114467 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272568 responseStatus[0;m=201 Created token[0;m=z41wNgCk | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=114509 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=272568 responseStatus[0;m=201 Created token[0;m=z41wNgCk | |
| section_end:1655886911:upload_artifacts_on_success [0Ksection_start:1655886911:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655886912:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886766:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886766:resolve_secrets [0Ksection_start:1655886766:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor921233961, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61703, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272564 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J272564_PROD_P112_CP8_C5 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563736 | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J272564_PROD_P112_CP8_C5 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --ntasks=2 --jobid=563736 --cpus-per-task=8 --mem=76G | |
| section_end:1655886773:prepare_executor [0Ksection_start:1655886773:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i7n35 via bbpv1.epfl.ch... | |
| section_end:1655886777:prepare_script [0Ksection_start:1655886777:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886777:get_sources [0Ksection_start:1655886777:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:coreneuron:nmodl:nvhpc:acc-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=109904 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1655886779:restore_cache [0Ksection_start:1655886779:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:nmodl (272555)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=110017 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272555 responseStatus[0;m=200 OK token[0;m=gTYvi8Yu | |
| section_end:1655886780:download_artifacts [0Ksection_start:1655886780:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272564/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272564/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272564/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272564/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272564/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703/J272564_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron%nvhpc +nmodl~openmp+gpu+tests~legacy-unit+sympy build_type=RelWithDebInfo ^hpe-mpi%gcc ^/4dzxcpsuksxgtuoesheax4sf76wrhkqb | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be 6q3vzbkyvzxputeeg6himnv7tcfu7ge7 | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563736/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563736/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:33:26 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.11 / 0.51 (21.75 %) | |
| Files: 1551 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: '6q3vzbkyvzxputeeg6himnv7tcfu7ge7' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron%nvhpc+gpu~legacy-unit+nmodl~openmp+sympy+tests build_type=RelWithDebInfo | |
| - ^hpe-mpi%gcc | |
| [+] ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - 6q3vzbk coreneuron@develop%nvhpc@22.3~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared+sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - 6s6wcfe ^bison@3.8.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] vn2t5vi ^boost@1.78.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] 2qmvlfy ^cmake@3.21.4%gcc@11.2.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [^] gi5x2dn ^cuda@11.6.1%nvhpc@22.3~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| - ajxdymq ^flex@2.6.3%nvhpc@22.3+lex~nls arch=linux-rhel7-skylake | |
| [^] hyunzkn ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] lbajih4 ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] evtnqzd ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] r74vcyb ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7lotjqk ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| - cp3ofsp ^ninja@1.10.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [+] 4dzxcps ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] atktt2p ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] e5qqxxq ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] jjl6cjc ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] z5kzef6 ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vt2or7v ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-6s6wcfeanp2mkdib4c3n3ivkcuosopgm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-vn2t5viljvtb5wyfhgmx57txyeiznxo4) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-2qmvlfyylrv3t5ankluyr5cqey2nlfzd) | |
| ==> cuda@11.6.1 : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-gi5x2dn47i7nv76flbq7aatllxpaqmjp) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-ajxdymqhnzqgeuhvk5nu5zfymzq35n6i) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/fmt-8.1.1-7lotjq | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-cp3ofspgkdqaqih5vrhotmdwvkozfswp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/catch2-2.13.8-atktt2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/cli11-2.1.1-e5qqxx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/nlohmann-json-3.10.4-jjl6cj | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-r74vcy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pybind11-2.9.1-z5kzef | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1.1-lbajih | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.9-vt2or7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/software/install_gcc-11.2.0-skylake/nmodl-develop-4dzxcp | |
| ==> Installing coreneuron-develop-6q3vzbkyvzxputeeg6himnv7tcfu7ge7 | |
| ==> No binary for coreneuron-develop-6q3vzbkyvzxputeeg6himnv7tcfu7ge7 found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703, but it is owned by 0 | |
| ==> No patches needed for coreneuron | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| ==> coreneuron: Successfully installed coreneuron-develop-6q3vzbkyvzxputeeg6himnv7tcfu7ge7 | |
| Fetch: 4.83s. Build: 3m 19.13s. Total: 3m 23.96s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/software/install_nvhpc-22.3-skylake/coreneuron-develop-6q3vzb | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563736/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563736/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:37:43 2022 | |
| Hits: 86 / 93 (92.47 %) | |
| Direct: 77 / 93 (82.80 %) | |
| Preprocessed: 9 / 16 (56.25 %) | |
| Misses: 7 | |
| Direct: 16 | |
| Preprocessed: 7 | |
| Uncacheable: 16 | |
| Primary storage: | |
| Hits: 163 / 186 (87.63 %) | |
| Misses: 23 | |
| Cache size (GB): 0.11 / 0.51 (21.82 %) | |
| Files: 1574 | |
| Uncacheable: | |
| Called for linking: 13 | |
| No input file: 3 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1655887063:step_script [0Ksection_start:1655887063:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:coreneuron:nmodl:nvhpc:acc-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=116262 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Anmodl%3Anvhpc%3Aacc-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1655887069:archive_cache [0Ksection_start:1655887069:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=116383 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272564 responseStatus[0;m=201 Created token[0;m=8_poxuS9 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=116431 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272564 responseStatus[0;m=201 Created token[0;m=8_poxuS9 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=116480 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=272564 responseStatus[0;m=201 Created token[0;m=8_poxuS9 | |
| section_end:1655887071:upload_artifacts_on_success [0Ksection_start:1655887071:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655887071:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886765:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886765:resolve_secrets [0Ksection_start:1655886765:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor907273375, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61703, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272562 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J272562_PROD_P112_CP0_C0 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563735 | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J272562_PROD_P112_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --ntasks=2 --jobid=563735 --cpus-per-task=8 --mem=76G | |
| section_end:1655886773:prepare_executor [0Ksection_start:1655886773:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i5n4 via bbpv1.epfl.ch... | |
| section_end:1655886775:prepare_script [0Ksection_start:1655886775:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886776:get_sources [0Ksection_start:1655886776:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:coreneuron:nmodl:nvhpc:omp-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=9491 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1655886778:restore_cache [0Ksection_start:1655886778:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:nmodl (272555)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=9573 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272555 responseStatus[0;m=200 OK token[0;m=gTYvi8Yu | |
| section_end:1655886779:download_artifacts [0Ksection_start:1655886779:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272562/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272562/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272562/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272562/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272562/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703/J272562_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron%nvhpc +nmodl+openmp+gpu+tests~legacy-unit~sympy build_type=RelWithDebInfo ^hpe-mpi%gcc ^/4dzxcpsuksxgtuoesheax4sf76wrhkqb | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be rjmenmrpgml6pswauzum5llfbry6ngnh | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563735/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563735/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:33:23 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.13 / 0.51 (25.48 %) | |
| Files: 1719 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'rjmenmrpgml6pswauzum5llfbry6ngnh' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron%nvhpc+gpu~legacy-unit+nmodl+openmp~sympy+tests build_type=RelWithDebInfo | |
| - ^hpe-mpi%gcc | |
| [+] ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - rjmenmr coreneuron@develop%nvhpc@22.3~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl+openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - 6s6wcfe ^bison@3.8.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] vn2t5vi ^boost@1.78.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] 2qmvlfy ^cmake@3.21.4%gcc@11.2.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [^] gi5x2dn ^cuda@11.6.1%nvhpc@22.3~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| - ajxdymq ^flex@2.6.3%nvhpc@22.3+lex~nls arch=linux-rhel7-skylake | |
| [^] hyunzkn ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] lbajih4 ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] evtnqzd ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] r74vcyb ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7lotjqk ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| - cp3ofsp ^ninja@1.10.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [+] 4dzxcps ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] atktt2p ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] e5qqxxq ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] jjl6cjc ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] z5kzef6 ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vt2or7v ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-6s6wcfeanp2mkdib4c3n3ivkcuosopgm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-vn2t5viljvtb5wyfhgmx57txyeiznxo4) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-2qmvlfyylrv3t5ankluyr5cqey2nlfzd) | |
| ==> cuda@11.6.1 : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-gi5x2dn47i7nv76flbq7aatllxpaqmjp) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-ajxdymqhnzqgeuhvk5nu5zfymzq35n6i) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/fmt-8.1.1-7lotjq | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-cp3ofspgkdqaqih5vrhotmdwvkozfswp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/catch2-2.13.8-atktt2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/cli11-2.1.1-e5qqxx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/nlohmann-json-3.10.4-jjl6cj | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-r74vcy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pybind11-2.9.1-z5kzef | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1.1-lbajih | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.9-vt2or7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/software/install_gcc-11.2.0-skylake/nmodl-develop-4dzxcp | |
| ==> Installing coreneuron-develop-rjmenmrpgml6pswauzum5llfbry6ngnh | |
| ==> No binary for coreneuron-develop-rjmenmrpgml6pswauzum5llfbry6ngnh found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703, but it is owned by 0 | |
| ==> No patches needed for coreneuron | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| ==> coreneuron: Successfully installed coreneuron-develop-rjmenmrpgml6pswauzum5llfbry6ngnh | |
| Fetch: 4.68s. Build: 3m 12.17s. Total: 3m 16.84s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/software/install_nvhpc-22.3-skylake/coreneuron-develop-rjmenm | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563735/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563735/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:37:31 2022 | |
| Hits: 86 / 94 (91.49 %) | |
| Direct: 77 / 94 (81.91 %) | |
| Preprocessed: 9 / 17 (52.94 %) | |
| Misses: 8 | |
| Direct: 17 | |
| Preprocessed: 8 | |
| Uncacheable: 17 | |
| Primary storage: | |
| Hits: 163 / 188 (86.70 %) | |
| Misses: 25 | |
| Cache size (GB): 0.13 / 0.51 (25.54 %) | |
| Files: 1744 | |
| Uncacheable: | |
| Called for linking: 14 | |
| No input file: 3 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1655887052:step_script [0Ksection_start:1655887052:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:coreneuron:nmodl:nvhpc:omp-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=14717 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Anmodl%3Anvhpc%3Aomp-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1655887058:archive_cache [0Ksection_start:1655887058:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=14935 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272562 responseStatus[0;m=201 Created token[0;m=d1-b9j5g | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=14975 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272562 responseStatus[0;m=201 Created token[0;m=d1-b9j5g | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=15019 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=272562 responseStatus[0;m=201 Created token[0;m=d1-b9j5g | |
| section_end:1655887060:upload_artifacts_on_success [0Ksection_start:1655887060:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655887061:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886675:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886675:resolve_secrets [0Ksection_start:1655886675:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor892370608, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61703, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272576 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J272576_PROD_P112_CP6_C10 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563724 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J272576_PROD_P112_CP6_C10 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --ntasks=2 --jobid=563724 --cpus-per-task=8 --mem=76G | |
| section_end:1655886677:prepare_executor [0Ksection_start:1655886677:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i7n22 via bbpv1.epfl.ch... | |
| section_end:1655886680:prepare_script [0Ksection_start:1655886680:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886680:get_sources [0Ksection_start:1655886680:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:neuron:mod2c:intel-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=188846 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1655886684:restore_cache [0Ksection_start:1655886684:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:mod2c:intel (272566)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=189098 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272566 responseStatus[0;m=200 OK token[0;m=qtyQzDND | |
| section_end:1655886685:download_artifacts [0Ksection_start:1655886685:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272576/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272576/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272576/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272576/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272576/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703/J272576_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%intel +coreneuron+debug+tests~legacy-unit~rx3d model_tests=channel-benchmark,olfactory,tqperf-heavy ^/iw7f7wskesewfnyvmtmk3lfqta3e4jpw | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be 5rhr7pzdmuyym5ch4jvmvyd7544mkxl4 | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563724/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563724/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:31:52 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.26 / 0.51 (51.42 %) | |
| Files: 13149 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: '5rhr7pzdmuyym5ch4jvmvyd7544mkxl4' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%intel+coreneuron+debug~legacy-unit~rx3d+tests model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^coreneuron@develop%intel@2021.4.0~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| [^] ^boost@1.78.0%intel@2021.4.0+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] ^hpe-mpi@2.25.hmpt%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] ^libsonata-report@1.1.1%intel@2021.4.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^hdf5@1.10.7%intel@2021.4.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^pkgconf@1.8.0%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] ^zlib@1.2.11%intel@2021.4.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.9.2%intel@2021.4.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@8.1.1%intel@2021.4.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%intel@2021.4.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^reportinglib@2.5.6%intel@2021.4.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - 5rhr7pz neuron@develop%intel@2021.4.0+binary~caliper+coreneuron+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~profile+python~rx3d+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c sanitizers=None arch=linux-rhel7-skylake | |
| - dwdch6b ^bison@3.8.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| - z3q5f3x ^cmake@3.21.4%intel@2021.4.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [+] iw7f7ws ^coreneuron@develop%intel@2021.4.0~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| [^] dl7pfht ^boost@1.78.0%intel@2021.4.0+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] 3narjkw ^hpe-mpi@2.25.hmpt%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] podtqd6 ^libsonata-report@1.1.1%intel@2021.4.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ofveh3j ^hdf5@1.10.7%intel@2021.4.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] xys6npz ^pkgconf@1.8.0%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] e7w5nez ^zlib@1.2.11%intel@2021.4.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] kxkrl2g ^spdlog@1.9.2%intel@2021.4.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] unnpvpo ^fmt@8.1.1%intel@2021.4.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [^] f27a7nn ^python@3.9.7%intel@2021.4.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] gdhqypa ^reportinglib@2.5.6%intel@2021.4.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - s4ueg72 ^flex@2.6.3%intel@2021.4.0+lex~nls arch=linux-rhel7-skylake | |
| [^] bjxwlfq ^gettext@0.21%intel@2021.4.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake | |
| [^] dvyfbbf ^bzip2@1.0.8%intel@2021.4.0~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] ka2cfu4 ^libiconv@1.16%intel@2021.4.0 libs=shared,static arch=linux-rhel7-skylake | |
| [^] w3ob7m2 ^libxml2@2.9.12%intel@2021.4.0~python arch=linux-rhel7-skylake | |
| [^] ahg6hq4 ^xz@5.2.5%intel@2021.4.0~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] q3rwuez ^ncurses@6.2%intel@2021.4.0~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] 2fli66n ^tar@1.28%intel@2021.4.0 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| - 6ggc5yr ^ninja@1.10.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] qj3vvxk ^py-mpi4py@3.1.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] 5flpilw ^py-setuptools@57.4.0%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] ipsbwzp ^py-numpy@1.19.5%intel@2021.4.0+blas+lapack patches=8a9d5d1b3f145c043b8b04869e7d46c6ff95c3f486d84f69693017c7e6190c7d arch=linux-rhel7-skylake | |
| [^] rl5ojfn ^intel-mkl@2020.4.304%intel@2021.4.0~ilp64+shared threads=none arch=linux-rhel7-skylake | |
| [^] taxuisw ^py-cython@0.29.24%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] tzmlo5v ^py-pytest@6.2.4%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] d5szgli ^py-attrs@21.2.0%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] huky5p4 ^py-iniconfig@1.1.1%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] wli7caj ^py-packaging@21.0%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] 3a3ralt ^py-pyparsing@2.4.7%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] rh6zvev ^py-pluggy@0.13.0%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] kpwupa3 ^py-setuptools-scm@6.3.2%intel@2021.4.0+toml arch=linux-rhel7-skylake | |
| [^] apu667d ^py-tomli@1.2.1%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] jesa65u ^py-pip@21.1.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] skrpmyr ^py-py@1.9.0%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] ktthpzx ^py-toml@0.10.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] tzl5sq5 ^py-pytest-cov@2.8.1%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] zkd7o6d ^py-coverage@5.5%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] 5abs2t7 ^readline@8.1%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-dwdch6bmdeclr2novthsywtrryotawwz) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-z3q5f3xwpuibd3qbgdscqmu3efarbu42) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-dl7pfhtsvyaq3273gr2g3l5vr37eeydc) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-3narjkwjh6i2jr3zl3g5wdjlqi52hkwh) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/pkgconf-1.8.0-xys6np | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-e7w5nezpwf572epfhbosqfzboztysout) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/fmt-8.1.1-unnpvp | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-f27a7nnhppeztxijpispnaedcfo2vjxi) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-s4ueg72j7l6vkdyvfxj2tweo7v7s3otx) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-dvyfbbfdan33i7wyydyeskb3legztopm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/libiconv-1.16-ka2cfu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/xz-5.2.5-ahg6hq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-q3rwuezhc2j56kexunypjpejzketozmc) | |
| [+] /usr (external tar-1.28-2fli66nkkv35g34exwd2xifp5w3gtgo6) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-6ggc5yre7qddwxdjmn7sfptpdoiy4dtp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/intel-mkl-2020.4.304-rzr3hj (external intel-mkl-2020.4.304-rl5ojfngtc7sffwyz7v6ek6eceq53wed) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/readline-8.1-we2frg (external readline-8.1-5abs2t7f6dtgbejv6kjzd4gjwhdlr7qr) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/reportinglib-2.5.6-gdhqyp | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/hdf5-1.10.7-ofveh3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/spdlog-1.9.2-kxkrl2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-setuptools-57.4.0-5flpil | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/libxml2-2.9.12-w3ob7m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/libsonata-report-1.1.1-podtqd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-iniconfig-1.1.1-huky5p | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-attrs-21.2.0-d5szgl | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-pip-21.1.2-jesa65 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-pyparsing-2.4.7-3a3ral | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-coverage-5.5-zkd7o6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-mpi4py-3.1.2-qj3vvx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-toml-0.10.2-ktthpz | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-cython-0.29.24-taxuis | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/gettext-0.21-bjxwlf | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/software/install_intel-2021.4.0-skylake/coreneuron-develop-iw7f7w | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-tomli-1.2.1-apu667 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-packaging-21.0-wli7ca | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-numpy-1.19.5-ipsbwz | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-setuptools-scm-6.3.2-kpwupa | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-py-1.9.0-skrpmy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-pluggy-0.13.0-rh6zve | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-pytest-6.2.4-tzmlo5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-pytest-cov-2.8.1-tzl5sq | |
| ==> Installing neuron-develop-5rhr7pzdmuyym5ch4jvmvyd7544mkxl4 | |
| ==> No binary for neuron-develop-5rhr7pzdmuyym5ch4jvmvyd7544mkxl4 found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703, but it is owned by 0 | |
| ==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-5rhr7pzdmuyym5ch4jvmvyd7544mkxl4 | |
| Fetch: 17.89s. Build: 11m 10.13s. Total: 11m 28.02s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/software/install_intel-2021.4.0-skylake/neuron-develop-5rhr7p | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563724/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563724/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:44:12 2022 | |
| Hits: 710 / 808 (87.87 %) | |
| Direct: 334 / 818 (40.83 %) | |
| Preprocessed: 376 / 478 (78.66 %) | |
| Misses: 98 | |
| Direct: 484 | |
| Preprocessed: 102 | |
| Uncacheable: 133 | |
| Primary storage: | |
| Hits: 1345 / 1630 (82.52 %) | |
| Misses: 285 | |
| Cache size (GB): 0.27 / 0.51 (52.96 %) | |
| Files: 13341 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 109 | |
| Called for preprocessing: 1 | |
| Compilation failed: 4 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1655887454:step_script [0Ksection_start:1655887454:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:neuron:mod2c:intel-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=218256 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Amod2c%3Aintel-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1655887466:archive_cache [0Ksection_start:1655887466:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=219520 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272576 responseStatus[0;m=201 Created token[0;m=Drd-tPsG | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=219656 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272576 responseStatus[0;m=201 Created token[0;m=Drd-tPsG | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=219715 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=272576 responseStatus[0;m=201 Created token[0;m=Drd-tPsG | |
| section_end:1655887468:upload_artifacts_on_success [0Ksection_start:1655887468:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655887469:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886681:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886681:resolve_secrets [0Ksection_start:1655886681:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor226378755, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61703, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272570 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J272570_PROD_P112_CP1_C1 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563729 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J272570_PROD_P112_CP1_C1 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --ntasks=2 --jobid=563729 --cpus-per-task=8 --mem=76G | |
| section_end:1655886685:prepare_executor [0Ksection_start:1655886685:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i7n28 via bbpv1.epfl.ch... | |
| section_end:1655886687:prepare_script [0Ksection_start:1655886687:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886688:get_sources [0Ksection_start:1655886688:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:neuron:mod2c:nvhpc:acc-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=168912 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1655886692:restore_cache [0Ksection_start:1655886692:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:mod2c:nvhpc:acc (272557)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=169062 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272557 responseStatus[0;m=200 OK token[0;m=rqsjQrsi | |
| section_end:1655886693:download_artifacts [0Ksection_start:1655886693:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272570/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272570/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272570/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272570/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272570/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703/J272570_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc +coreneuron+debug+tests~legacy-unit~rx3d model_tests=channel-benchmark,olfactory,tqperf-heavy ^/6qi7xiczl6qfolioernjyooskeukbk4m | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be mqy2bmic4al44uogrem4llrvfdch65dy | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563729/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563729/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:31:58 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.39 / 0.51 (75.51 %) | |
| Files: 10862 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'mqy2bmic4al44uogrem4llrvfdch65dy' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+coreneuron+debug~legacy-unit~rx3d+tests model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^coreneuron@develop%nvhpc@22.3~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl+openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^boost@1.78.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] ^cuda@11.6.1%nvhpc@22.3~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] ^hpe-mpi@2.25.hmpt%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] ^libsonata-report@1.1.1%nvhpc@22.3~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^hdf5@1.10.7%nvhpc@22.3+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^pkgconf@1.8.0%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] ^zlib@1.2.11%nvhpc@22.3+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.9.2%nvhpc@22.3~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@8.1.1%nvhpc@22.3~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%nvhpc@22.3+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^reportinglib@2.5.6%nvhpc@22.3~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - mqy2bmi neuron@develop%nvhpc@22.3+binary~caliper+coreneuron+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~profile+python~rx3d+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c sanitizers=None arch=linux-rhel7-skylake | |
| - 6s6wcfe ^bison@3.8.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| - ucwiakr ^cmake@3.21.4%nvhpc@22.3~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [+] 6qi7xic ^coreneuron@develop%nvhpc@22.3~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl+openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] vn2t5vi ^boost@1.78.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] gi5x2dn ^cuda@11.6.1%nvhpc@22.3~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] pjmdwuu ^hpe-mpi@2.25.hmpt%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] 6d2jeoj ^libsonata-report@1.1.1%nvhpc@22.3~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] tbfoeg7 ^hdf5@1.10.7%nvhpc@22.3+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 6dfyugs ^pkgconf@1.8.0%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] h7lotu6 ^zlib@1.2.11%nvhpc@22.3+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] v5zxpfc ^spdlog@1.9.2%nvhpc@22.3~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] jeloytj ^fmt@8.1.1%nvhpc@22.3~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [^] f62u3oh ^python@3.9.7%nvhpc@22.3+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] bdkvweu ^reportinglib@2.5.6%nvhpc@22.3~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - ajxdymq ^flex@2.6.3%nvhpc@22.3+lex~nls arch=linux-rhel7-skylake | |
| [^] lswrnpk ^gettext@0.21%nvhpc@22.3+bzip2+curses+git~libunistring+libxml2+tar+xz patches=6e530daaae14725d578d6cafbf7d523accc9ed29fd817bd421cf98a5f51e9e1b,bbe9f0539aa504966ac104224d25a9260faa1015ed3adda936467be9c7de4eae,fb27a3fb5e414bdc50ffebbbe2da986473df70a493caa4396226f51a67c55424 arch=linux-rhel7-skylake | |
| [^] h3k3sur ^bzip2@1.0.8%nvhpc@22.3~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] f4hjvxq ^libiconv@1.16%nvhpc@22.3 libs=shared,static arch=linux-rhel7-skylake | |
| [^] i3pi6vv ^libxml2@2.9.12%nvhpc@22.3~python patches=05ff238cf435825ef835c7ae39376b52dc83d8caf19e962f0766c841386a305a,10a88ad47f9797cf7cf2d7d07241f665a3b6d1f31fa026728c8c2ae93e1664e9 arch=linux-rhel7-skylake | |
| [^] cqwvvjz ^xz@5.2.5%nvhpc@22.3~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] jpe3but ^ncurses@6.2%nvhpc@22.3~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] zmpra4b ^tar@1.28%nvhpc@22.3 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| - cp3ofsp ^ninja@1.10.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] v2mlx7s ^py-mpi4py@3.1.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] l4z6bjq ^py-setuptools@57.4.0%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] kohlctm ^py-numpy@1.17.5%gcc@11.2.0+blas+lapack patches=cf407c1024b0878c4222dd352aa9dece412073bb15b138243a2893725434c7b6 arch=linux-rhel7-skylake | |
| [^] r5cvgru ^intel-mkl@2020.4.304%gcc@11.2.0~ilp64+shared threads=none arch=linux-rhel7-skylake | |
| [^] dzkzhqs ^py-pytest@6.2.4%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] iopgs7j ^py-attrs@21.2.0%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] prphkb7 ^py-iniconfig@1.1.1%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] iwg6vas ^py-packaging@21.0%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] o7j2crb ^py-pyparsing@2.4.7%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] uecslka ^py-pluggy@0.13.0%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] fjgegze ^py-setuptools-scm@6.3.2%nvhpc@22.3+toml arch=linux-rhel7-skylake | |
| [^] xsvykjn ^py-tomli@1.2.1%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] w6kat5w ^py-pip@21.1.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] qhehf4e ^py-py@1.9.0%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] yg6s277 ^py-toml@0.10.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] l6udtg7 ^py-pytest-cov@2.8.1%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] lfjn2o4 ^py-coverage@5.5%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] 3333cwm ^readline@8.1%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-6s6wcfeanp2mkdib4c3n3ivkcuosopgm) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-ucwiakreeghdgbo22kbqqhgnnlwxqtnn) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-vn2t5viljvtb5wyfhgmx57txyeiznxo4) | |
| ==> cuda@11.6.1 : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-gi5x2dn47i7nv76flbq7aatllxpaqmjp) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-pjmdwuu36ioiwqyrg6lrj7nrq3waqjj2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/pkgconf-1.8.0-6dfyug | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-h7lotu6jszcvumwucry2y5jnhvxw5x2d) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/fmt-8.1.1-jeloyt | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-f62u3ohchswt5q2b63chawohzqrl6wvy) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-ajxdymqhnzqgeuhvk5nu5zfymzq35n6i) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-h3k3surwc24macvlxbcme35uztk6dqiw) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/libiconv-1.16-f4hjvx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/xz-5.2.5-cqwvvj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-jpe3butfegqspi6dnm7cyikpjt5nphfo) | |
| [+] /usr (external tar-1.28-zmpra4bla6bcjnayn6eze4rnd5u4txfm) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-cp3ofspgkdqaqih5vrhotmdwvkozfswp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/intel-mkl-2020.4.304-rzr3hj (external intel-mkl-2020.4.304-r5cvgrurdnt6y267arsmmmgqi75ouxd2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/readline-8.1-we2frg (external readline-8.1-3333cwmykvahrsdydir4qeyasic3liq6) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/reportinglib-2.5.6-bdkvwe | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/hdf5-1.10.7-tbfoeg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/spdlog-1.9.2-v5zxpf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-setuptools-57.4.0-l4z6bj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/libxml2-2.9.12-i3pi6v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/libsonata-report-1.1.1-6d2jeo | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-numpy-1.17.5-kohlct | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-iniconfig-1.1.1-prphkb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-mpi4py-3.1.2-v2mlx7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-attrs-21.2.0-iopgs7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-coverage-5.5-lfjn2o | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-toml-0.10.2-yg6s27 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-pyparsing-2.4.7-o7j2cr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-pip-21.1.2-w6kat5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/gettext-0.21-lswrnp | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/software/install_nvhpc-22.3-skylake/coreneuron-develop-6qi7xi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-packaging-21.0-iwg6va | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-tomli-1.2.1-xsvykj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-setuptools-scm-6.3.2-fjgegz | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-py-1.9.0-qhehf4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-pluggy-0.13.0-uecslk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-pytest-6.2.4-dzkzhq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-pytest-cov-2.8.1-l6udtg | |
| ==> Installing neuron-develop-mqy2bmic4al44uogrem4llrvfdch65dy | |
| ==> No binary for neuron-develop-mqy2bmic4al44uogrem4llrvfdch65dy found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703, but it is owned by 0 | |
| ==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-mqy2bmic4al44uogrem4llrvfdch65dy | |
| Fetch: 14.79s. Build: 12m 14.58s. Total: 12m 29.38s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/software/install_nvhpc-22.3-skylake/neuron-develop-mqy2bm | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563729/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563729/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:45:23 2022 | |
| Hits: 710 / 807 (87.98 %) | |
| Direct: 334 / 817 (40.88 %) | |
| Preprocessed: 376 / 477 (78.83 %) | |
| Misses: 97 | |
| Direct: 483 | |
| Preprocessed: 101 | |
| Uncacheable: 125 | |
| Primary storage: | |
| Hits: 1345 / 1628 (82.62 %) | |
| Misses: 283 | |
| Cache size (GB): 0.39 / 0.51 (75.74 %) | |
| Files: 11052 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 101 | |
| Called for preprocessing: 1 | |
| Compilation failed: 4 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1655887526:step_script [0Ksection_start:1655887526:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:neuron:mod2c:nvhpc:acc-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=191628 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Amod2c%3Anvhpc%3Aacc-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1655887543:archive_cache [0Ksection_start:1655887543:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=191826 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272570 responseStatus[0;m=201 Created token[0;m=GfgP22x2 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=191867 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272570 responseStatus[0;m=201 Created token[0;m=GfgP22x2 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=191911 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=272570 responseStatus[0;m=201 Created token[0;m=GfgP22x2 | |
| section_end:1655887544:upload_artifacts_on_success [0Ksection_start:1655887544:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655887545:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886916:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886916:resolve_secrets [0Ksection_start:1655886916:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor871026775, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61703, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272578 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J272578_PROD_P112_CP3_C7 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563747 | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J272578_PROD_P112_CP3_C7 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --ntasks=2 --jobid=563747 --cpus-per-task=8 --mem=76G | |
| section_end:1655886925:prepare_executor [0Ksection_start:1655886925:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i6n30 via bbpv1.epfl.ch... | |
| section_end:1655886928:prepare_script [0Ksection_start:1655886928:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886929:get_sources [0Ksection_start:1655886929:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:neuron:nmodl:intel-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=260237 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1655886933:restore_cache [0Ksection_start:1655886933:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:intel (272568)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=260366 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272568 responseStatus[0;m=200 OK token[0;m=z41wNgCk | |
| section_end:1655886934:download_artifacts [0Ksection_start:1655886934:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272578/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272578/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272578/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272578/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272578/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703/J272578_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%intel +coreneuron+debug+tests~legacy-unit~rx3d model_tests=channel-benchmark,olfactory,tqperf-heavy ^/rh5oq7ygplbbyryh6avavlwff7ieo23w | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be jhl3fvxgrrds5w2v5yyiqgn3n4pxwftn | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563747/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563747/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:36:00 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.34 / 0.51 (66.96 %) | |
| Files: 15837 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'jhl3fvxgrrds5w2v5yyiqgn3n4pxwftn' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%intel+coreneuron+debug~legacy-unit~rx3d+tests model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^coreneuron@develop%intel@2021.4.0~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| [^] ^boost@1.78.0%intel@2021.4.0+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [+] ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - jhl3fvx neuron@develop%intel@2021.4.0+binary~caliper+coreneuron+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~profile+python~rx3d+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c sanitizers=None arch=linux-rhel7-skylake | |
| - dwdch6b ^bison@3.8.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| - z3q5f3x ^cmake@3.21.4%intel@2021.4.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [+] rh5oq7y ^coreneuron@develop%intel@2021.4.0~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| [^] dl7pfht ^boost@1.78.0%intel@2021.4.0+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] hyunzkn ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] lbajih4 ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] evtnqzd ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] r74vcyb ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7lotjqk ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [+] 4dzxcps ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] atktt2p ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] e5qqxxq ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] jjl6cjc ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] z5kzef6 ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vt2or7v ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - s4ueg72 ^flex@2.6.3%intel@2021.4.0+lex~nls arch=linux-rhel7-skylake | |
| [^] iu2b5hx ^gettext@0.21%gcc@11.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake | |
| [^] 3rmq3zx ^bzip2@1.0.8%gcc@11.2.0~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] hxxlexb ^libiconv@1.16%gcc@11.2.0 libs=shared,static arch=linux-rhel7-skylake | |
| [^] dnxqn2k ^libxml2@2.9.12%gcc@11.2.0~python arch=linux-rhel7-skylake | |
| [^] jzpqn5y ^xz@5.2.5%gcc@11.2.0~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] ams67cx ^ncurses@6.2%gcc@11.2.0~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] ir7xtbl ^tar@1.28%gcc@11.2.0 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| - 6ggc5yr ^ninja@1.10.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] n6q4vfz ^py-mpi4py@3.1.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] gjm7kkq ^py-numpy@1.19.5%gcc@11.2.0+blas+lapack patches=8a9d5d1b3f145c043b8b04869e7d46c6ff95c3f486d84f69693017c7e6190c7d arch=linux-rhel7-skylake | |
| [^] r5cvgru ^intel-mkl@2020.4.304%gcc@11.2.0~ilp64+shared threads=none arch=linux-rhel7-skylake | |
| [^] h2fsi6i ^py-cython@0.29.24%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] q5n7ofc ^py-pytest-cov@2.8.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] fudvy5v ^py-coverage@5.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5abs2t7 ^readline@8.1%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-dwdch6bmdeclr2novthsywtrryotawwz) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-z3q5f3xwpuibd3qbgdscqmu3efarbu42) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-dl7pfhtsvyaq3273gr2g3l5vr37eeydc) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/fmt-8.1.1-7lotjq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/catch2-2.13.8-atktt2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/cli11-2.1.1-e5qqxx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/nlohmann-json-3.10.4-jjl6cj | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-s4ueg72j7l6vkdyvfxj2tweo7v7s3otx) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-3rmq3zxuntsiphthnvty6gtydbmbkwr5) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libiconv-1.16-hxxlex | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/xz-5.2.5-jzpqn5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-ams67cxbq5vc7wiay2ndr2ksce2igbfw) | |
| [+] /usr (external tar-1.28-ir7xtblauhq3vtkpjrl7ou3nzevcsi3u) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-6ggc5yre7qddwxdjmn7sfptpdoiy4dtp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/intel-mkl-2020.4.304-rzr3hj (external intel-mkl-2020.4.304-r5cvgrurdnt6y267arsmmmgqi75ouxd2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/readline-8.1-we2frg (external readline-8.1-5abs2t7f6dtgbejv6kjzd4gjwhdlr7qr) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-r74vcy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pybind11-2.9.1-z5kzef | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libxml2-2.9.12-dnxqn2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1.1-lbajih | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpi4py-3.1.2-n6q4vf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-coverage-5.5-fudvy5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-cython-0.29.24-h2fsi6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.9-vt2or7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/gettext-0.21-iu2b5h | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-numpy-1.19.5-gjm7kk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-cov-2.8.1-q5n7of | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/software/install_gcc-11.2.0-skylake/nmodl-develop-4dzxcp | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/software/install_intel-2021.4.0-skylake/coreneuron-develop-rh5oq7 | |
| ==> Installing neuron-develop-jhl3fvxgrrds5w2v5yyiqgn3n4pxwftn | |
| ==> No binary for neuron-develop-jhl3fvxgrrds5w2v5yyiqgn3n4pxwftn found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703, but it is owned by 0 | |
| ==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-jhl3fvxgrrds5w2v5yyiqgn3n4pxwftn | |
| Fetch: 13.90s. Build: 16m 40.51s. Total: 16m 54.41s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/software/install_intel-2021.4.0-skylake/neuron-develop-jhl3fv | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563747/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563747/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:53:54 2022 | |
| Hits: 695 / 793 (87.64 %) | |
| Direct: 165 / 803 (20.55 %) | |
| Preprocessed: 530 / 632 (83.86 %) | |
| Misses: 98 | |
| Direct: 638 | |
| Preprocessed: 102 | |
| Uncacheable: 129 | |
| Primary storage: | |
| Hits: 1161 / 1600 (72.56 %) | |
| Misses: 439 | |
| Cache size (GB): 0.35 / 0.51 (67.58 %) | |
| Files: 16183 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 105 | |
| Called for preprocessing: 1 | |
| Compilation failed: 4 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1655888037:step_script [0Ksection_start:1655888037:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:neuron:nmodl:intel-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=289783 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Anmodl%3Aintel-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1655888052:archive_cache [0Ksection_start:1655888052:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=290194 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272578 responseStatus[0;m=201 Created token[0;m=sBzNUJxs | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=290232 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272578 responseStatus[0;m=201 Created token[0;m=sBzNUJxs | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=290277 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=272578 responseStatus[0;m=201 Created token[0;m=sBzNUJxs | |
| section_end:1655888054:upload_artifacts_on_success [0Ksection_start:1655888054:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655888054:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655887074:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655887074:resolve_secrets [0Ksection_start:1655887074:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor569730641, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61703, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272573 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J272573_PROD_P112_CP8_C5 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563753 | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J272573_PROD_P112_CP8_C5 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --ntasks=2 --jobid=563753 --cpus-per-task=8 --mem=76G | |
| section_end:1655887079:prepare_executor [0Ksection_start:1655887079:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i7n35 via bbpv1.epfl.ch... | |
| section_end:1655887081:prepare_script [0Ksection_start:1655887081:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655887082:get_sources [0Ksection_start:1655887082:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:acc-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=116984 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1655887086:restore_cache [0Ksection_start:1655887086:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:nvhpc:acc (272564)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=117051 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272564 responseStatus[0;m=200 OK token[0;m=8_poxuS9 | |
| section_end:1655887087:download_artifacts [0Ksection_start:1655887087:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272573/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272573/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272573/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272573/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272573/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703/J272573_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc +coreneuron+debug+tests~legacy-unit~rx3d model_tests=channel-benchmark,olfactory,tqperf-heavy ^/6q3vzbkyvzxputeeg6himnv7tcfu7ge7 | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be f6nikkkl3jokiiz56xke2nvdgfsrjose | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563753/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563753/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:38:32 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.36 / 0.51 (70.94 %) | |
| Files: 14131 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'f6nikkkl3jokiiz56xke2nvdgfsrjose' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+coreneuron+debug~legacy-unit~rx3d+tests model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^coreneuron@develop%nvhpc@22.3~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared+sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^boost@1.78.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] ^cuda@11.6.1%nvhpc@22.3~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [+] ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - f6nikkk neuron@develop%nvhpc@22.3+binary~caliper+coreneuron+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~profile+python~rx3d+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c sanitizers=None arch=linux-rhel7-skylake | |
| - 6s6wcfe ^bison@3.8.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| - ucwiakr ^cmake@3.21.4%nvhpc@22.3~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [+] 6q3vzbk ^coreneuron@develop%nvhpc@22.3~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared+sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] vn2t5vi ^boost@1.78.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] gi5x2dn ^cuda@11.6.1%nvhpc@22.3~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] hyunzkn ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] lbajih4 ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] evtnqzd ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] r74vcyb ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7lotjqk ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [+] 4dzxcps ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] atktt2p ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] e5qqxxq ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] jjl6cjc ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] z5kzef6 ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vt2or7v ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - ajxdymq ^flex@2.6.3%nvhpc@22.3+lex~nls arch=linux-rhel7-skylake | |
| [^] iu2b5hx ^gettext@0.21%gcc@11.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake | |
| [^] 3rmq3zx ^bzip2@1.0.8%gcc@11.2.0~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] hxxlexb ^libiconv@1.16%gcc@11.2.0 libs=shared,static arch=linux-rhel7-skylake | |
| [^] dnxqn2k ^libxml2@2.9.12%gcc@11.2.0~python arch=linux-rhel7-skylake | |
| [^] jzpqn5y ^xz@5.2.5%gcc@11.2.0~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] ams67cx ^ncurses@6.2%gcc@11.2.0~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] ir7xtbl ^tar@1.28%gcc@11.2.0 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| - cp3ofsp ^ninja@1.10.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] n6q4vfz ^py-mpi4py@3.1.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] gjm7kkq ^py-numpy@1.19.5%gcc@11.2.0+blas+lapack patches=8a9d5d1b3f145c043b8b04869e7d46c6ff95c3f486d84f69693017c7e6190c7d arch=linux-rhel7-skylake | |
| [^] r5cvgru ^intel-mkl@2020.4.304%gcc@11.2.0~ilp64+shared threads=none arch=linux-rhel7-skylake | |
| [^] h2fsi6i ^py-cython@0.29.24%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] q5n7ofc ^py-pytest-cov@2.8.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] fudvy5v ^py-coverage@5.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 3333cwm ^readline@8.1%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-6s6wcfeanp2mkdib4c3n3ivkcuosopgm) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-ucwiakreeghdgbo22kbqqhgnnlwxqtnn) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-vn2t5viljvtb5wyfhgmx57txyeiznxo4) | |
| ==> cuda@11.6.1 : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-gi5x2dn47i7nv76flbq7aatllxpaqmjp) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/fmt-8.1.1-7lotjq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/catch2-2.13.8-atktt2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/cli11-2.1.1-e5qqxx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/nlohmann-json-3.10.4-jjl6cj | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-ajxdymqhnzqgeuhvk5nu5zfymzq35n6i) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-3rmq3zxuntsiphthnvty6gtydbmbkwr5) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libiconv-1.16-hxxlex | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/xz-5.2.5-jzpqn5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-ams67cxbq5vc7wiay2ndr2ksce2igbfw) | |
| [+] /usr (external tar-1.28-ir7xtblauhq3vtkpjrl7ou3nzevcsi3u) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-cp3ofspgkdqaqih5vrhotmdwvkozfswp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/intel-mkl-2020.4.304-rzr3hj (external intel-mkl-2020.4.304-r5cvgrurdnt6y267arsmmmgqi75ouxd2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/readline-8.1-we2frg (external readline-8.1-3333cwmykvahrsdydir4qeyasic3liq6) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-r74vcy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pybind11-2.9.1-z5kzef | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libxml2-2.9.12-dnxqn2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1.1-lbajih | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpi4py-3.1.2-n6q4vf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-cython-0.29.24-h2fsi6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-coverage-5.5-fudvy5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.9-vt2or7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/gettext-0.21-iu2b5h | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-numpy-1.19.5-gjm7kk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-cov-2.8.1-q5n7of | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/software/install_gcc-11.2.0-skylake/nmodl-develop-4dzxcp | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/software/install_nvhpc-22.3-skylake/coreneuron-develop-6q3vzb | |
| ==> Installing neuron-develop-f6nikkkl3jokiiz56xke2nvdgfsrjose | |
| ==> No binary for neuron-develop-f6nikkkl3jokiiz56xke2nvdgfsrjose found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703, but it is owned by 0 | |
| ==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-f6nikkkl3jokiiz56xke2nvdgfsrjose | |
| Fetch: 15.38s. Build: 11m 41.60s. Total: 11m 56.99s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/software/install_nvhpc-22.3-skylake/neuron-develop-f6nikk | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563753/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563753/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:51:21 2022 | |
| Hits: 695 / 792 (87.75 %) | |
| Direct: 165 / 802 (20.57 %) | |
| Preprocessed: 530 / 631 (83.99 %) | |
| Misses: 97 | |
| Direct: 637 | |
| Preprocessed: 101 | |
| Uncacheable: 122 | |
| Primary storage: | |
| Hits: 1161 / 1598 (72.65 %) | |
| Misses: 437 | |
| Cache size (GB): 0.37 / 0.51 (71.69 %) | |
| Files: 14475 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 98 | |
| Called for preprocessing: 1 | |
| Compilation failed: 4 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1655887882:step_script [0Ksection_start:1655887882:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:neuron:nmodl:nvhpc:acc-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=136449 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Anmodl%3Anvhpc%3Aacc-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1655887897:archive_cache [0Ksection_start:1655887897:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=136547 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272573 responseStatus[0;m=201 Created token[0;m=R7pBG9od | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=136587 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272573 responseStatus[0;m=201 Created token[0;m=R7pBG9od | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=136630 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=272573 responseStatus[0;m=201 Created token[0;m=R7pBG9od | |
| section_end:1655887898:upload_artifacts_on_success [0Ksection_start:1655887898:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655887899:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655887062:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655887062:resolve_secrets [0Ksection_start:1655887062:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor488889918, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61703, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272571 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J272571_PROD_P112_CP0_C0 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563751 | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J272571_PROD_P112_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --ntasks=2 --jobid=563751 --cpus-per-task=8 --mem=76G | |
| section_end:1655887067:prepare_executor [0Ksection_start:1655887067:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i5n4 via bbpv1.epfl.ch... | |
| section_end:1655887069:prepare_script [0Ksection_start:1655887069:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655887069:get_sources [0Ksection_start:1655887069:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:omp-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=15476 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1655887074:restore_cache [0Ksection_start:1655887074:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:nvhpc:omp (272562)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=15602 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272562 responseStatus[0;m=200 OK token[0;m=d1-b9j5g | |
| section_end:1655887075:download_artifacts [0Ksection_start:1655887075:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272571/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272571/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272571/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272571/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272571/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703/J272571_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc +coreneuron+debug+tests~legacy-unit~rx3d model_tests=channel-benchmark,olfactory,tqperf-heavy ^/rjmenmrpgml6pswauzum5llfbry6ngnh | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be 2supl4esjx3ghhb3azj32rf6llwrd6wk | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563751/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563751/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:38:19 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.39 / 0.51 (76.03 %) | |
| Files: 13350 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: '2supl4esjx3ghhb3azj32rf6llwrd6wk' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+coreneuron+debug~legacy-unit~rx3d+tests model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^coreneuron@develop%nvhpc@22.3~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl+openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^boost@1.78.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] ^cuda@11.6.1%nvhpc@22.3~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [+] ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - 2supl4e neuron@develop%nvhpc@22.3+binary~caliper+coreneuron+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~profile+python~rx3d+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c sanitizers=None arch=linux-rhel7-skylake | |
| - 6s6wcfe ^bison@3.8.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| - ucwiakr ^cmake@3.21.4%nvhpc@22.3~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [+] rjmenmr ^coreneuron@develop%nvhpc@22.3~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl+openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] vn2t5vi ^boost@1.78.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] gi5x2dn ^cuda@11.6.1%nvhpc@22.3~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] hyunzkn ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] lbajih4 ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] evtnqzd ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] r74vcyb ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7lotjqk ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [+] 4dzxcps ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] atktt2p ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] e5qqxxq ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] jjl6cjc ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] z5kzef6 ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vt2or7v ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - ajxdymq ^flex@2.6.3%nvhpc@22.3+lex~nls arch=linux-rhel7-skylake | |
| [^] iu2b5hx ^gettext@0.21%gcc@11.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake | |
| [^] 3rmq3zx ^bzip2@1.0.8%gcc@11.2.0~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] hxxlexb ^libiconv@1.16%gcc@11.2.0 libs=shared,static arch=linux-rhel7-skylake | |
| [^] dnxqn2k ^libxml2@2.9.12%gcc@11.2.0~python arch=linux-rhel7-skylake | |
| [^] jzpqn5y ^xz@5.2.5%gcc@11.2.0~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] ams67cx ^ncurses@6.2%gcc@11.2.0~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] ir7xtbl ^tar@1.28%gcc@11.2.0 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| - cp3ofsp ^ninja@1.10.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] n6q4vfz ^py-mpi4py@3.1.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] gjm7kkq ^py-numpy@1.19.5%gcc@11.2.0+blas+lapack patches=8a9d5d1b3f145c043b8b04869e7d46c6ff95c3f486d84f69693017c7e6190c7d arch=linux-rhel7-skylake | |
| [^] r5cvgru ^intel-mkl@2020.4.304%gcc@11.2.0~ilp64+shared threads=none arch=linux-rhel7-skylake | |
| [^] h2fsi6i ^py-cython@0.29.24%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] q5n7ofc ^py-pytest-cov@2.8.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] fudvy5v ^py-coverage@5.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 3333cwm ^readline@8.1%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-6s6wcfeanp2mkdib4c3n3ivkcuosopgm) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-ucwiakreeghdgbo22kbqqhgnnlwxqtnn) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-vn2t5viljvtb5wyfhgmx57txyeiznxo4) | |
| ==> cuda@11.6.1 : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-gi5x2dn47i7nv76flbq7aatllxpaqmjp) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/fmt-8.1.1-7lotjq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/catch2-2.13.8-atktt2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/cli11-2.1.1-e5qqxx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/nlohmann-json-3.10.4-jjl6cj | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-ajxdymqhnzqgeuhvk5nu5zfymzq35n6i) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-3rmq3zxuntsiphthnvty6gtydbmbkwr5) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libiconv-1.16-hxxlex | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/xz-5.2.5-jzpqn5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-ams67cxbq5vc7wiay2ndr2ksce2igbfw) | |
| [+] /usr (external tar-1.28-ir7xtblauhq3vtkpjrl7ou3nzevcsi3u) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-cp3ofspgkdqaqih5vrhotmdwvkozfswp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/intel-mkl-2020.4.304-rzr3hj (external intel-mkl-2020.4.304-r5cvgrurdnt6y267arsmmmgqi75ouxd2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/readline-8.1-we2frg (external readline-8.1-3333cwmykvahrsdydir4qeyasic3liq6) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-r74vcy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pybind11-2.9.1-z5kzef | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libxml2-2.9.12-dnxqn2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1.1-lbajih | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-coverage-5.5-fudvy5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpi4py-3.1.2-n6q4vf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-cython-0.29.24-h2fsi6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.9-vt2or7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/gettext-0.21-iu2b5h | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-numpy-1.19.5-gjm7kk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-cov-2.8.1-q5n7of | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/software/install_gcc-11.2.0-skylake/nmodl-develop-4dzxcp | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/software/install_nvhpc-22.3-skylake/coreneuron-develop-rjmenm | |
| ==> Installing neuron-develop-2supl4esjx3ghhb3azj32rf6llwrd6wk | |
| ==> No binary for neuron-develop-2supl4esjx3ghhb3azj32rf6llwrd6wk found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703, but it is owned by 0 | |
| ==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-2supl4esjx3ghhb3azj32rf6llwrd6wk | |
| Fetch: 13.95s. Build: 10m 44.19s. Total: 10m 58.14s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/software/install_nvhpc-22.3-skylake/neuron-develop-2supl4 | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563751/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563751/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:50:09 2022 | |
| Hits: 695 / 792 (87.75 %) | |
| Direct: 169 / 802 (21.07 %) | |
| Preprocessed: 526 / 627 (83.89 %) | |
| Misses: 97 | |
| Direct: 633 | |
| Preprocessed: 101 | |
| Uncacheable: 122 | |
| Primary storage: | |
| Hits: 1165 / 1598 (72.90 %) | |
| Misses: 433 | |
| Cache size (GB): 0.39 / 0.51 (76.74 %) | |
| Files: 13690 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 98 | |
| Called for preprocessing: 1 | |
| Compilation failed: 4 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1655887810:step_script [0Ksection_start:1655887810:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:neuron:nmodl:nvhpc:omp-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=33072 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1655887827:archive_cache [0Ksection_start:1655887827:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=33171 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272571 responseStatus[0;m=201 Created token[0;m=YdQ518dT | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=33213 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272571 responseStatus[0;m=201 Created token[0;m=YdQ518dT | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=33257 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=272571 responseStatus[0;m=201 Created token[0;m=YdQ518dT | |
| section_end:1655887828:upload_artifacts_on_success [0Ksection_start:1655887828:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655887829:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886528:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886528:resolve_secrets [0Ksection_start:1655886528:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor927807123, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61703, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272555 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J272555_PROD_P112_CP0_C0 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563711 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J272555_PROD_P112_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --ntasks=2 --jobid=563711 --cpus-per-task=8 --mem=76G | |
| section_end:1655886530:prepare_executor [0Ksection_start:1655886530:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i5n23 via bbpv1.epfl.ch... | |
| section_end:1655886532:prepare_script [0Ksection_start:1655886532:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886533:get_sources [0Ksection_start:1655886533:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:nmodl-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=199700 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1655886538:restore_cache [0Ksection_start:1655886538:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (272553)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=200640 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272553 responseStatus[0;m=200 OK token[0;m=ZdRCG-CU | |
| section_end:1655886539:download_artifacts [0Ksection_start:1655886539:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272555/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272555/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272555/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272555/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272555/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703/J272555_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install nmodl%gcc ~legacy-unit | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be 4dzxcpsuksxgtuoesheax4sf76wrhkqb | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563711/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563711/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:29:20 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.43 / 0.51 (84.03 %) | |
| Files: 490 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: '4dzxcpsuksxgtuoesheax4sf76wrhkqb' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - nmodl%gcc~legacy-unit | |
| Concretized | |
| -------------------------------- | |
| - 4dzxcps nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - cppb7al ^bison@3.8.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] atktt2p ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 2qmvlfy ^cmake@3.21.4%gcc@11.2.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [^] e5qqxxq ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - 4bt76dp ^flex@2.6.3%gcc@11.2.0+lex~nls arch=linux-rhel7-skylake | |
| [^] 7lotjqk ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| - utrxbc3 ^ninja@1.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] jjl6cjc ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] z5kzef6 ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ciusbmc ^py-setuptools-scm@6.3.2%gcc@11.2.0+toml arch=linux-rhel7-skylake | |
| [^] hmcew6w ^py-tomli@1.2.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] sxd7srs ^py-pip@21.1.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vt2or7v ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] r74vcyb ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-cppb7alftvhxbedsuxqv72z2thjuoizw) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-2qmvlfyylrv3t5ankluyr5cqey2nlfzd) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-4bt76dpxbix6ep4qtz3mv5i2iddilv53) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-utrxbc3aohnru5eynalc3hyv4ca4jqte) | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/fmt-8.1.1-7lotjq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/nlohmann-json-3.10.4-jjl6cj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/cli11-2.1.1-e5qqxx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/catch2-2.13.8-atktt2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-r74vcy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.9-vt2or7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pip-21.1.2-sxd7sr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pybind11-2.9.1-z5kzef | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-tomli-1.2.1-hmcew6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-scm-6.3.2-ciusbm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| ==> Installing nmodl-develop-4dzxcpsuksxgtuoesheax4sf76wrhkqb | |
| ==> No binary for nmodl-develop-4dzxcpsuksxgtuoesheax4sf76wrhkqb found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703, but it is owned by 0 | |
| ==> No patches needed for nmodl | |
| ==> nmodl: Executing phase: 'cmake' | |
| ==> nmodl: Executing phase: 'build' | |
| ==> nmodl: Executing phase: 'install' | |
| ==> nmodl: Successfully installed nmodl-develop-4dzxcpsuksxgtuoesheax4sf76wrhkqb | |
| Fetch: 50.49s. Build: 1m 18.69s. Total: 2m 9.18s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/software/install_gcc-11.2.0-skylake/nmodl-develop-4dzxcp | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563711/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563711/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:32:20 2022 | |
| Hits: 129 / 131 (98.47 %) | |
| Direct: 28 / 131 (21.37 %) | |
| Preprocessed: 101 / 103 (98.06 %) | |
| Misses: 2 | |
| Direct: 103 | |
| Preprocessed: 2 | |
| Uncacheable: 26 | |
| Primary storage: | |
| Hits: 157 / 262 (59.92 %) | |
| Misses: 105 | |
| Cache size (GB): 0.43 / 0.51 (84.05 %) | |
| Files: 494 | |
| Uncacheable: | |
| Called for linking: 25 | |
| No input file: 1 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1655886743:step_script [0Ksection_start:1655886743:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:nmodl-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=209693 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Anmodl-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1655886762:archive_cache [0Ksection_start:1655886762:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=209865 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272555 responseStatus[0;m=201 Created token[0;m=gTYvi8Yu | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=209905 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272555 responseStatus[0;m=201 Created token[0;m=gTYvi8Yu | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=209946 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=272555 responseStatus[0;m=201 Created token[0;m=gTYvi8Yu | |
| section_end:1655886763:upload_artifacts_on_success [0Ksection_start:1655886763:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655886764:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886445:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886445:resolve_secrets [0Ksection_start:1655886445:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor198830004, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61703, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272553 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703, optional exclusive flag , optional cpus per task flag --cpus-per-task=6, optional qos flag | |
| A slurm job will be created with name GL_J272553_PROD_P112_CP0_C1 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563709 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M --job-name=GL_J272553_PROD_P112_CP0_C1 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --ntasks=1 --jobid=563709 --cpus-per-task=6 --mem=30750M | |
| section_end:1655886446:prepare_executor [0Ksection_start:1655886446:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i5n23 via bbpv1.epfl.ch... | |
| section_end:1655886447:prepare_script [0Ksection_start:1655886447:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886448:get_sources [0Ksection_start:1655886448:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ if [[ -n "${SPACK_ENV_FILE_URL}" && "${PARSE_GITHUB_PR_DESCRIPTIONS,,}" == "true" ]]; then[0;m | |
| [32;1m$ cat > parse_description.py << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ cat parse_description.py[0;m | |
| import os | |
| import re | |
| import requests | |
| pr_info = requests.get("https://api.github.com/repos/{}/pulls/{}".format( | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_TARGET_REPOSITORY'], | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_IID']), | |
| headers={'Accept': 'application/vnd.github.v3+json'}) | |
| pr_body = pr_info.json()["body"] | |
| # match something like NEURON_BRANCH=foo/bar | |
| pat = re.compile('^([A-Z0-9_]+)_([A-Z]+)=([A-Z0-9\-\_\/\+]+)$', re.IGNORECASE) | |
| def parse_term(m): | |
| ref_type = m.group(2).lower() | |
| if ref_type not in {'branch', 'tag', 'ref'}: return | |
| print(m.group(1).upper() + '_' + ref_type.upper() + '=' + m.group(3)) | |
| if pr_body is not None: | |
| for pr_body_line in pr_body.splitlines(): | |
| if not pr_body_line.startswith('CI_BRANCHES:'): continue | |
| for config_term in pr_body_line[12:].split(','): | |
| pat.sub(parse_term, config_term) | |
| [32;1m$ (module load unstable python-dev; python parse_description.py) > input_variables.env[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ else[0;m | |
| [32;1m$ cat input_variables.env[0;m | |
| [32;1m$ for var_to_unset in $(sed 's/^\(.*\?\)_\(BRANCH\|COMMIT\|TAG\)=.*$/\1_BRANCH\n\1_COMMIT\n\1_TAG/' input_variables.env); do # collapsed multi-line command[0;m | |
| [32;1m$ set -o allexport[0;m | |
| [32;1m$ . input_variables.env[0;m | |
| [32;1m$ set +o allexport[0;m | |
| [32;1m$ unset MODULEPATH[0;m | |
| [32;1m$ . /gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config/modules.sh[0;m | |
| [32;1m$ echo "MODULEPATH=${MODULEPATH}" > spack_clone_variables.env[0;m | |
| [32;1m$ echo Preparing to clone Spack into ${PWD}[0;m | |
| Preparing to clone Spack into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272553 | |
| [32;1m$ if [[ -z "${SPACK_BRANCH}" && ( -n "${SPACK_COMMIT}" || -n "${SPACK_TAG}" ) ]]; then[0;m | |
| [32;1m$ echo Checking out the ${SPACK_BRANCH} of Spack...[0;m | |
| Checking out the develop of Spack... | |
| [32;1m$ module load unstable git[0;m | |
| [32;1m$ git clone -c feature.manyFiles=true --depth 1 --single-branch --branch ${SPACK_BRANCH} ${SPACK_URL} spack[0;m | |
| Cloning into 'spack'... | |
| Updating files: 34% (3118/9129) Updating files: 35% (3196/9129) Updating files: 36% (3287/9129) Updating files: 37% (3378/9129) Updating files: 38% (3470/9129) Updating files: 39% (3561/9129) Updating files: 40% (3652/9129) Updating files: 41% (3743/9129) Updating files: 42% (3835/9129) Updating files: 43% (3926/9129) Updating files: 44% (4017/9129) Updating files: 45% (4109/9129) Updating files: 46% (4200/9129) Updating files: 47% (4291/9129) Updating files: 48% (4382/9129) Updating files: 49% (4474/9129) Updating files: 50% (4565/9129) Updating files: 51% (4656/9129) Updating files: 52% (4748/9129) Updating files: 53% (4839/9129) Updating files: 54% (4930/9129) Updating files: 55% (5021/9129) Updating files: 56% (5113/9129) Updating files: 57% (5204/9129) Updating files: 57% (5287/9129) Updating files: 58% (5295/9129) Updating files: 59% (5387/9129) Updating files: 60% (5478/9129) Updating files: 61% (5569/9129) Updating files: 62% (5660/9129) Updating files: 63% (5752/9129) Updating files: 64% (5843/9129) Updating files: 65% (5934/9129) Updating files: 66% (6026/9129) Updating files: 67% (6117/9129) Updating files: 68% (6208/9129) Updating files: 69% (6300/9129) Updating files: 70% (6391/9129) Updating files: 70% (6435/9129) Updating files: 71% (6482/9129) Updating files: 72% (6573/9129) Updating files: 73% (6665/9129) Updating files: 74% (6756/9129) Updating files: 75% (6847/9129) Updating files: 75% (6890/9129) Updating files: 76% (6939/9129) Updating files: 77% (7030/9129) Updating files: 78% (7121/9129) Updating files: 79% (7212/9129) Updating files: 80% (7304/9129) Updating files: 81% (7395/9129) Updating files: 81% (7437/9129) Updating files: 82% (7486/9129) Updating files: 83% (7578/9129) Updating files: 84% (7669/9129) Updating files: 85% (7760/9129) Updating files: 86% (7851/9129) Updating files: 87% (7943/9129) Updating files: 88% (8034/9129) Updating files: 89% (8125/9129) Updating files: 90% (8217/9129) Updating files: 90% (8270/9129) Updating files: 91% (8308/9129) Updating files: 92% (8399/9129) Updating files: 93% (8490/9129) Updating files: 94% (8582/9129) Updating files: 95% (8673/9129) Updating files: 96% (8764/9129) Updating files: 97% (8856/9129) Updating files: 98% (8947/9129) Updating files: 99% (9038/9129) Updating files: 100% (9129/9129) Updating files: 100% (9129/9129), done. | |
| [32;1m$ export SPACK_ROOT=${PWD}/spack[0;m | |
| [32;1m$ export SPACK_USER_CACHE_PATH="${CI_BUILDS_DIR}"[0;m | |
| [32;1m$ export SPACK_SYSTEM_CONFIG_PATH="/gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config"[0;m | |
| [32;1m$ echo "SPACK_ROOT=${SPACK_ROOT}" >> spack_clone_variables.env[0;m | |
| [32;1m$ echo "SPACK_USER_CACHE_PATH=${SPACK_USER_CACHE_PATH}" >> spack_clone_variables.env[0;m | |
| [32;1m$ echo "SPACK_SYSTEM_CONFIG_PATH=${SPACK_SYSTEM_CONFIG_PATH}" >> spack_clone_variables.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703/J272553_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ env -0 | sed -nz '/^CUSTOM_ENV_/d;/^[^=]\+_\(BRANCH\|COMMIT\|TAG\)=.\+/p' | xargs -0t spack configure-pipeline --ignore-packages CI_BUILD CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK ${SPACK_SETUP_IGNORE_PACKAGE_VARIABLES} --write-commit-file=commit-mapping.env[0;m | |
| spack configure-pipeline --ignore-packages CI_BUILD CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK --write-commit-file=commit-mapping.env CI_COMMIT_BRANCH=pramodk/omp-simd GITLAB_PIPELINES_BRANCH=main NEURON_BRANCH=master NMODL_BRANCH=master SPACK_BRANCH=develop CI_DEFAULT_BRANCH=master CORENEURON_COMMIT=6f9c31e54f65ead9165e43fe268144873a37c0c1 | |
| ==> CI_COMMIT: ignoring CI_COMMIT_BRANCH=pramodk/omp-simd | |
| ==> GITLAB_PIPELINES: ignoring GITLAB_PIPELINES_BRANCH=main | |
| ==> SPACK: ignoring SPACK_BRANCH=develop | |
| ==> CI_DEFAULT: ignoring CI_DEFAULT_BRANCH=master | |
| ==> neuron: resolved branch master to f242cc8d4ddefb74f71f7f613a4b7b4043c2b641 | |
| ==> nmodl: resolved branch master to 426b508730185f8d3475c63b9d5a1aba02be9848 | |
| ==> neuron@develop: remove branch/commit/tag | |
| ==> neuron@develop: use commit="f242cc8d4ddefb74f71f7f613a4b7b4043c2b641" | |
| ==> neuron@develop: add preferred=True | |
| ==> nmodl@develop: remove branch/commit/tag | |
| ==> nmodl@develop: use commit="426b508730185f8d3475c63b9d5a1aba02be9848" | |
| ==> nmodl@develop: add preferred=True | |
| ==> coreneuron@develop: remove branch/commit/tag | |
| ==> coreneuron@develop: use commit="6f9c31e54f65ead9165e43fe268144873a37c0c1" | |
| ==> coreneuron@develop: add preferred=True | |
| [32;1m$ (cd "${SPACK_ROOT}" && git diff)[0;m | |
| diff --git a/bluebrain/repo-bluebrain/packages/coreneuron/package.py b/bluebrain/repo-bluebrain/packages/coreneuron/package.py | |
| index 4ac1697..86ea33d 100644 | |
| --- a/bluebrain/repo-bluebrain/packages/coreneuron/package.py | |
| +++ b/bluebrain/repo-bluebrain/packages/coreneuron/package.py | |
| @@ -20,7 +20,7 @@ class Coreneuron(CMakePackage): | |
| # This simplifies testing the gitlab-pipelines repository: | |
| git = "git@bbpgitlab.epfl.ch:hpc/coreneuron.git" | |
| - version('develop', branch='master') | |
| + version('develop', preferred=True, commit='6f9c31e54f65ead9165e43fe268144873a37c0c1') # old: branch='master' | |
| # 1.0.1 > 1.0.0.20210519 > 1.0 as far as Spack is concerned | |
| version('1.0.0.20220304', commit='2d08705') | |
| version('1.0.0.20220218', commit='102ebde') | |
| diff --git a/bluebrain/repo-bluebrain/packages/nmodl/package.py b/bluebrain/repo-bluebrain/packages/nmodl/package.py | |
| index 814c56b..4e699a9 100644 | |
| --- a/bluebrain/repo-bluebrain/packages/nmodl/package.py | |
| +++ b/bluebrain/repo-bluebrain/packages/nmodl/package.py | |
| @@ -14,7 +14,7 @@ class Nmodl(CMakePackage): | |
| git = "https://github.com/BlueBrain/nmodl.git" | |
| # 0.3.1 > 0.3.0.20220110 > 0.3.0 > 0.3b > 0.3 to Spack | |
| - version("develop", branch="master", submodules=True) | |
| + version('develop', preferred=True, commit='426b508730185f8d3475c63b9d5a1aba02be9848', submodules=True) # old: branch="master" | |
| version("llvm", branch="llvm", submodules=True) | |
| # This is the merge commit of #875, which allows catch2 etc. to be dependencies | |
| version("0.3.0.20220531", commit="d63a061ee01b1fd6b14971644bb7fa3efeee20b0") | |
| diff --git a/bluebrain/repo-patches/packages/neuron/package.py b/bluebrain/repo-patches/packages/neuron/package.py | |
| index 8a74d23..74e1fc5 100644 | |
| --- a/bluebrain/repo-patches/packages/neuron/package.py | |
| +++ b/bluebrain/repo-patches/packages/neuron/package.py | |
| @@ -30,7 +30,7 @@ class Neuron(CMakePackage): | |
| # Patch for recent CMake versions that don't identify NVHPC as PGI | |
| patch("patch-v800-cmake-nvhpc.patch", when="@8.0.0%nvhpc^cmake@3.20:") | |
| - version("develop", branch="master") | |
| + version('develop', preferred=True, commit='f242cc8d4ddefb74f71f7f613a4b7b4043c2b641') # old: branch="master" | |
| version("8.0.2", tag="8.0.2") | |
| version("8.0.1", tag="8.0.1") | |
| version("8.0.0", tag="8.0.0") | |
| [32;1m$ cat commit-mapping.env[0;m | |
| NEURON_COMMIT=f242cc8d4ddefb74f71f7f613a4b7b4043c2b641 | |
| NMODL_COMMIT=426b508730185f8d3475c63b9d5a1aba02be9848 | |
| CORENEURON_COMMIT=6f9c31e54f65ead9165e43fe268144873a37c0c1 | |
| [32;1m$ echo "SPACK_BRANCH=${SPACK_BRANCH}" >> commit-mapping.env[0;m | |
| [32;1m$ echo "SPACK_DEPLOYMENT_SUFFIX=${SPACK_DEPLOYMENT_SUFFIX}" >> commit-mapping.env[0;m | |
| [32;1m$ cat commit-mapping.env >> spack_clone_variables.env[0;m | |
| [32;1m$ spack spec -IL ninja[0;m | |
| Input spec | |
| -------------------------------- | |
| - ninja | |
| Concretized | |
| -------------------------------- | |
| ==> Bootstrapping clingo from pre-built binaries | |
| - utrxbc3aohnru5eynalc3hyv4ca4jqte ninja@1.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [32;1m$ echo "SPACK_SETUP_COMMIT_MAPPING_URL=${CI_API_V4_URL}/projects/${CI_PROJECT_ID}/jobs/${CI_JOB_ID}/artifacts/commit-mapping.env" >> spack_clone_variables.env[0;m | |
| [32;1m$ spack config --scope site add "config:ccache:true"[0;m | |
| [32;1m$ echo "SPACK_USE_CCACHE=true" >> spack_clone_variables.env[0;m | |
| section_end:1655886519:step_script [0Ksection_start:1655886519:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=199115 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| commit-mapping.env: found 1 matching files and directories[0;m | |
| input_variables.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272553 responseStatus[0;m=201 Created token[0;m=ZdRCG-CU | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=199174 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=272553 responseStatus[0;m=201 Created token[0;m=ZdRCG-CU | |
| section_end:1655886521:upload_artifacts_on_success [0Ksection_start:1655886521:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655886521:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886677:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886677:resolve_secrets [0Ksection_start:1655886677:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor470784755, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61703, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272587 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J272587_PROD_P112_CP8_C14 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563727 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J272587_PROD_P112_CP8_C14 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --ntasks=8 --jobid=563727 --cpus-per-task=1 --mem=30750M | |
| section_end:1655886678:prepare_executor [0Ksection_start:1655886678:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i5n4 via bbpv1.epfl.ch... | |
| section_end:1655886680:prepare_script [0Ksection_start:1655886680:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886681:get_sources [0Ksection_start:1655886681:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:mod2c:intel (272566)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=5208 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272566 responseStatus[0;m=200 OK token[0;m=qtyQzDND | |
| section_end:1655886682:download_artifacts [0Ksection_start:1655886682:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r2i5n16 | |
| Build name: Linux-icpc | |
| Create new tag: 20220622-0831 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272566/spack-build/spack-stage-coreneuron-develop-iw7f7wskesewfnyvmtmk3lfqta3e4jpw/spack-build-iw7f7ws | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| Start 17: reporting_1 | |
| 1/17 Test #6: ring_TEST .......................... Passed 2.67 sec | |
| Start 7: ring_binqueue_TEST | |
| 2/17 Test #17: reporting_1 ........................ Passed 2.67 sec | |
| 3/17 Test #1: cmd_interface_test ................. Passed 2.88 sec | |
| Start 8: ring_multisend_TEST | |
| 4/17 Test #2: interleave_info_constructor_test ... Passed 2.91 sec | |
| 5/17 Test #4: queuing_test ....................... Passed 3.20 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 6/17 Test #3: alignment_test ..................... Passed 3.31 sec | |
| 7/17 Test #5: lfp_test ........................... Passed 3.45 sec | |
| Start 10: ring_permute1_TEST | |
| 8/17 Test #7: ring_binqueue_TEST ................. Passed 2.56 sec | |
| Start 11: ring_permute2_TEST | |
| 9/17 Test #8: ring_multisend_TEST ................ Passed 2.45 sec | |
| Start 12: ring_gap_TEST | |
| 10/17 Test #9: ring_spike_buffer_TEST ............. Passed 2.24 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 11/17 Test #10: ring_permute1_TEST ................. Passed 2.55 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 12/17 Test #13: ring_gap_binqueue_TEST ............. Passed 4.46 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/17 Test #14: ring_gap_multisend_TEST ............ Passed 4.22 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 14/17 Test #16: ring_gap_permute2_TEST ............. Passed 2.59 sec | |
| 15/17 Test #11: ring_permute2_TEST ................. Passed 7.70 sec | |
| 16/17 Test #12: ring_gap_TEST ...................... Passed 8.17 sec | |
| 17/17 Test #15: ring_gap_permute1_TEST ............. Passed 3.62 sec | |
| 100% tests passed, 0 tests failed out of 17 | |
| Total Test time (real) = 13.55 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1655886727:step_script [0Ksection_start:1655886727:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=8630 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272587 responseStatus[0;m=201 Created token[0;m=o5hoEg8N | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=8664 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272587 responseStatus[0;m=201 Created token[0;m=o5hoEg8N | |
| section_end:1655886729:upload_artifacts_on_success [0Ksection_start:1655886729:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655886730:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886683:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886683:resolve_secrets [0Ksection_start:1655886683:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor680772273, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61703, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272582 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J272582_PROD_P112_CP10_C16 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 563731 | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J272582_PROD_P112_CP10_C16 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --ntasks=8 --jobid=563731 --cpus-per-task=1 --mem=30750M | |
| section_end:1655886685:prepare_executor [0Ksection_start:1655886685:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch... | |
| section_end:1655886692:prepare_script [0Ksection_start:1655886692:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886693:get_sources [0Ksection_start:1655886693:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:mod2c:nvhpc:acc:unified (272560)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=50685 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272560 responseStatus[0;m=200 OK token[0;m=epz1h4Bs | |
| section_end:1655886694:download_artifacts [0Ksection_start:1655886694:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r2i5n23 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220622-0832 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272560/spack-build/spack-stage-coreneuron-develop-7xhnxahexeffbne3dpzxwo5qcrumhnar/spack-build-7xhnxah | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| Start 19: reporting_1 | |
| 1/19 Test #1: cmd_interface_test ..................... Passed 3.64 sec | |
| 2/19 Test #4: queuing_test ........................... Passed 3.89 sec | |
| Start 7: ring_binqueue_TEST | |
| 3/19 Test #5: lfp_test ............................... Passed 4.27 sec | |
| 4/19 Test #6: ring_TEST .............................. Passed 17.44 sec | |
| Start 8: ring_multisend_TEST | |
| 5/19 Test #3: alignment_test ......................... Passed 18.90 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 6/19 Test #19: reporting_1 ............................ Passed 20.58 sec | |
| 7/19 Test #2: interleave_info_constructor_test ....... Passed 22.72 sec | |
| Start 10: ring_permute1_TEST | |
| 8/19 Test #7: ring_binqueue_TEST ..................... Passed 19.08 sec | |
| Start 11: ring_permute2_TEST | |
| 9/19 Test #8: ring_multisend_TEST .................... Passed 20.98 sec | |
| Start 12: ring_gap_TEST | |
| 10/19 Test #9: ring_spike_buffer_TEST ................. Passed 37.10 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 11/19 Test #10: ring_permute1_TEST ..................... Passed 33.49 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 12/19 Test #11: ring_permute2_TEST ..................... Passed 33.29 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/19 Test #12: ring_gap_TEST .......................... Passed 50.07 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 14/19 Test #13: ring_gap_binqueue_TEST ................. Passed 301.99 sec | |
| Start 17: ring_permute2_cudaInterface_TEST | |
| 15/19 Test #15: ring_gap_permute1_TEST ................. Passed 306.90 sec | |
| Start 18: ring_gap_permute2_cudaInterface_TEST | |
| 16/19 Test #14: ring_gap_multisend_TEST ................ Passed 307.01 sec | |
| 17/19 Test #16: ring_gap_permute2_TEST ................. Passed 274.77 sec | |
| 18/19 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 7.47 sec | |
| 19/19 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 5.34 sec | |
| 100% tests passed, 0 tests failed out of 19 | |
| Total Test time (real) = 368.53 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1655887089:step_script [0Ksection_start:1655887089:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=60788 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272582 responseStatus[0;m=201 Created token[0;m=xKga4JVi | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=60919 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272582 responseStatus[0;m=201 Created token[0;m=xKga4JVi | |
| section_end:1655887091:upload_artifacts_on_success [0Ksection_start:1655887091:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655887092:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886682:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886682:resolve_secrets [0Ksection_start:1655886682:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor558285101, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61703, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272580 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J272580_PROD_P112_CP3_C7 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 563730 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J272580_PROD_P112_CP3_C7 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --ntasks=8 --jobid=563730 --cpus-per-task=1 --mem=30750M | |
| section_end:1655886685:prepare_executor [0Ksection_start:1655886685:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch... | |
| section_end:1655886692:prepare_script [0Ksection_start:1655886692:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886693:get_sources [0Ksection_start:1655886693:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:mod2c:nvhpc:acc (272557)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=50630 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272557 responseStatus[0;m=200 OK token[0;m=rqsjQrsi | |
| section_end:1655886694:download_artifacts [0Ksection_start:1655886694:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r2i5n23 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220622-0832 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272557/spack-build/spack-stage-coreneuron-develop-6qi7xiczl6qfolioernjyooskeukbk4m/spack-build-6qi7xic | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| Start 19: reporting_1 | |
| 1/19 Test #2: interleave_info_constructor_test ....... Passed 3.89 sec | |
| 2/19 Test #3: alignment_test ......................... Passed 4.36 sec | |
| Start 7: ring_binqueue_TEST | |
| 3/19 Test #1: cmd_interface_test ..................... Passed 4.53 sec | |
| 4/19 Test #5: lfp_test ............................... Passed 4.78 sec | |
| Start 8: ring_multisend_TEST | |
| 5/19 Test #4: queuing_test ........................... Passed 4.86 sec | |
| 6/19 Test #19: reporting_1 ............................ Passed 20.25 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 7/19 Test #6: ring_TEST .............................. Passed 21.27 sec | |
| Start 10: ring_permute1_TEST | |
| 8/19 Test #7: ring_binqueue_TEST ..................... Passed 23.78 sec | |
| Start 11: ring_permute2_TEST | |
| 9/19 Test #8: ring_multisend_TEST .................... Passed 23.47 sec | |
| Start 12: ring_gap_TEST | |
| 10/19 Test #10: ring_permute1_TEST ..................... Passed 34.37 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 11/19 Test #9: ring_spike_buffer_TEST ................. Passed 35.64 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 12/19 Test #11: ring_permute2_TEST ..................... Passed 27.97 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/19 Test #12: ring_gap_TEST .......................... Passed 27.95 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 14/19 Test #13: ring_gap_binqueue_TEST ................. Passed 63.03 sec | |
| Start 17: ring_permute2_cudaInterface_TEST | |
| 15/19 Test #14: ring_gap_multisend_TEST ................ Passed 62.83 sec | |
| Start 18: ring_gap_permute2_cudaInterface_TEST | |
| 16/19 Test #16: ring_gap_permute2_TEST ................. Passed 62.59 sec | |
| 17/19 Test #15: ring_gap_permute1_TEST ................. Passed 62.74 sec | |
| 18/19 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 42.69 sec | |
| 19/19 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 43.00 sec | |
| 100% tests passed, 0 tests failed out of 19 | |
| Total Test time (real) = 161.75 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1655886883:step_script [0Ksection_start:1655886883:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=58400 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272580 responseStatus[0;m=201 Created token[0;m=e_t16Vte | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=58432 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272580 responseStatus[0;m=201 Created token[0;m=e_t16Vte | |
| section_end:1655886884:upload_artifacts_on_success [0Ksection_start:1655886884:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655886885:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886917:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886917:resolve_secrets [0Ksection_start:1655886917:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor413150369, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61703, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272589 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J272589_PROD_P112_CP5_C9 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563748 | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J272589_PROD_P112_CP5_C9 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --ntasks=8 --jobid=563748 --cpus-per-task=1 --mem=30750M | |
| section_end:1655886925:prepare_executor [0Ksection_start:1655886925:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i4n7 via bbpv1.epfl.ch... | |
| section_end:1655886929:prepare_script [0Ksection_start:1655886929:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886930:get_sources [0Ksection_start:1655886930:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:intel (272568)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=13080 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272568 responseStatus[0;m=200 OK token[0;m=z41wNgCk | |
| section_end:1655886931:download_artifacts [0Ksection_start:1655886931:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i7n35 | |
| Build name: Linux-icpc | |
| Create new tag: 20220622-0836 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272568/spack-build/spack-stage-coreneuron-develop-rh5oq7ygplbbyryh6avavlwff7ieo23w/spack-build-rh5oq7y | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| 1/17 Test #1: cmd_interface_test ................. Passed 1.32 sec | |
| Start 3: alignment_test | |
| 2/17 Test #2: interleave_info_constructor_test ... Passed 1.44 sec | |
| Start 4: queuing_test | |
| 3/17 Test #3: alignment_test ..................... Passed 0.88 sec | |
| Start 5: lfp_test | |
| 4/17 Test #4: queuing_test ....................... Passed 0.88 sec | |
| Start 17: reporting_1 | |
| 5/17 Test #17: reporting_1 ........................ Passed 0.85 sec | |
| 6/17 Test #5: lfp_test ........................... Passed 1.13 sec | |
| Start 6: ring_TEST | |
| 7/17 Test #6: ring_TEST .......................... Passed 0.72 sec | |
| Start 7: ring_binqueue_TEST | |
| 8/17 Test #7: ring_binqueue_TEST ................. Passed 0.72 sec | |
| Start 8: ring_multisend_TEST | |
| 9/17 Test #8: ring_multisend_TEST ................ Passed 0.69 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 10/17 Test #9: ring_spike_buffer_TEST ............. Passed 0.68 sec | |
| Start 10: ring_permute1_TEST | |
| 11/17 Test #10: ring_permute1_TEST ................. Passed 0.69 sec | |
| Start 11: ring_permute2_TEST | |
| 12/17 Test #11: ring_permute2_TEST ................. Passed 0.84 sec | |
| Start 12: ring_gap_TEST | |
| 13/17 Test #12: ring_gap_TEST ...................... Passed 0.73 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 14/17 Test #13: ring_gap_binqueue_TEST ............. Passed 0.73 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 15/17 Test #14: ring_gap_multisend_TEST ............ Passed 0.74 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 16/17 Test #15: ring_gap_permute1_TEST ............. Passed 0.76 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 17/17 Test #16: ring_gap_permute2_TEST ............. Passed 0.87 sec | |
| 100% tests passed, 0 tests failed out of 17 | |
| Total Test time (real) = 11.52 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1655886973:step_script [0Ksection_start:1655886973:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=14515 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272589 responseStatus[0;m=201 Created token[0;m=TfsyfzBs | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=14529 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272589 responseStatus[0;m=201 Created token[0;m=TfsyfzBs | |
| section_end:1655886975:upload_artifacts_on_success [0Ksection_start:1655886975:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655886975:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655887075:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655887075:resolve_secrets [0Ksection_start:1655887075:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor181457429, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61703, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272585 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J272585_PROD_P112_CP11_C9 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 563754 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J272585_PROD_P112_CP11_C9 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --ntasks=8 --jobid=563754 --cpus-per-task=1 --mem=30750M | |
| section_end:1655887078:prepare_executor [0Ksection_start:1655887078:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch... | |
| section_end:1655887086:prepare_script [0Ksection_start:1655887086:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655887087:get_sources [0Ksection_start:1655887087:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:nvhpc:acc (272564)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=60336 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272564 responseStatus[0;m=200 OK token[0;m=8_poxuS9 | |
| section_end:1655887089:download_artifacts [0Ksection_start:1655887089:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i7n35 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220622-0838 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272564/spack-build/spack-stage-coreneuron-develop-6q3vzbkyvzxputeeg6himnv7tcfu7ge7/spack-build-6q3vzbk | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| Start 19: reporting_1 | |
| 1/19 Test #1: cmd_interface_test ..................... Passed 1.68 sec | |
| 2/19 Test #3: alignment_test ......................... Passed 1.81 sec | |
| Start 7: ring_binqueue_TEST | |
| 3/19 Test #2: interleave_info_constructor_test ....... Passed 1.92 sec | |
| 4/19 Test #4: queuing_test ........................... Passed 2.03 sec | |
| Start 8: ring_multisend_TEST | |
| 5/19 Test #5: lfp_test ............................... Passed 2.20 sec | |
| 6/19 Test #19: reporting_1 ............................ Passed 17.23 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 7/19 Test #6: ring_TEST .............................. Passed 21.98 sec | |
| Start 10: ring_permute1_TEST | |
| 8/19 Test #7: ring_binqueue_TEST ..................... Passed 20.80 sec | |
| Start 11: ring_permute2_TEST | |
| 9/19 Test #8: ring_multisend_TEST .................... Passed 20.84 sec | |
| Start 12: ring_gap_TEST | |
| 10/19 Test #9: ring_spike_buffer_TEST ................. Passed 19.25 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 11/19 Test #10: ring_permute1_TEST ..................... Passed 22.79 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 12/19 Test #11: ring_permute2_TEST ..................... Passed 23.02 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/19 Test #12: ring_gap_TEST .......................... Passed 29.05 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 14/19 Test #13: ring_gap_binqueue_TEST ................. Passed 66.16 sec | |
| Start 17: ring_permute2_cudaInterface_TEST | |
| 15/19 Test #14: ring_gap_multisend_TEST ................ Passed 95.52 sec | |
| Start 18: ring_gap_permute2_cudaInterface_TEST | |
| 16/19 Test #16: ring_gap_permute2_TEST ................. Passed 92.52 sec | |
| 17/19 Test #15: ring_gap_permute1_TEST ................. Passed 98.92 sec | |
| 18/19 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 42.00 sec | |
| 19/19 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 36.96 sec | |
| 100% tests passed, 0 tests failed out of 19 | |
| Total Test time (real) = 177.28 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1655887291:step_script [0Ksection_start:1655887291:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=67258 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272585 responseStatus[0;m=201 Created token[0;m=AesnpSK8 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=67294 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272585 responseStatus[0;m=201 Created token[0;m=AesnpSK8 | |
| section_end:1655887292:upload_artifacts_on_success [0Ksection_start:1655887292:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655887293:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655887063:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655887063:resolve_secrets [0Ksection_start:1655887063:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor241378336, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61703, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272583 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J272583_PROD_P112_CP5_C3 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 563752 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J272583_PROD_P112_CP5_C3 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --ntasks=8 --jobid=563752 --cpus-per-task=1 --mem=30750M | |
| section_end:1655887066:prepare_executor [0Ksection_start:1655887066:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch... | |
| section_end:1655887074:prepare_script [0Ksection_start:1655887074:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655887074:get_sources [0Ksection_start:1655887074:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:nvhpc:omp (272562)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=59549 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272562 responseStatus[0;m=200 OK token[0;m=d1-b9j5g | |
| section_end:1655887075:download_artifacts [0Ksection_start:1655887075:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i5n4 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220622-0838 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272562/spack-build/spack-stage-coreneuron-develop-rjmenmrpgml6pswauzum5llfbry6ngnh/spack-build-rjmenmr | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| Start 19: reporting_1 | |
| 1/19 Test #1: cmd_interface_test ..................... Passed 1.23 sec | |
| 2/19 Test #2: interleave_info_constructor_test ....... Passed 2.18 sec | |
| Start 7: ring_binqueue_TEST | |
| 3/19 Test #5: lfp_test ............................... Passed 4.08 sec | |
| 4/19 Test #3: alignment_test ......................... Passed 4.10 sec | |
| Start 8: ring_multisend_TEST | |
| 5/19 Test #4: queuing_test ........................... Passed 4.12 sec | |
| 6/19 Test #19: reporting_1 ............................ Passed 9.41 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 7/19 Test #6: ring_TEST .............................. Passed 13.36 sec | |
| Start 10: ring_permute1_TEST | |
| 8/19 Test #7: ring_binqueue_TEST ..................... Passed 18.33 sec | |
| Start 11: ring_permute2_TEST | |
| 9/19 Test #8: ring_multisend_TEST .................... Passed 16.43 sec | |
| Start 12: ring_gap_TEST | |
| 10/19 Test #9: ring_spike_buffer_TEST ................. Passed 11.24 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 11/19 Test #10: ring_permute1_TEST ..................... Passed 20.12 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 12/19 Test #11: ring_permute2_TEST ..................... Passed 23.00 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/19 Test #12: ring_gap_TEST .......................... Passed 123.59 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 14/19 Test #13: ring_gap_binqueue_TEST ................. Passed 123.58 sec | |
| Start 17: ring_permute2_cudaInterface_TEST | |
| 15/19 Test #14: ring_gap_multisend_TEST ................ Passed 128.60 sec | |
| Start 18: ring_gap_permute2_cudaInterface_TEST | |
| 16/19 Test #15: ring_gap_permute1_TEST ................. Passed 118.70 sec | |
| 17/19 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 53.47 sec | |
| 18/19 Test #16: ring_gap_permute2_TEST ................. Passed 69.07 sec | |
| 19/19 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 51.58 sec | |
| 100% tests passed, 0 tests failed out of 19 | |
| Total Test time (real) = 213.70 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1655887315:step_script [0Ksection_start:1655887315:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=67785 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272583 responseStatus[0;m=201 Created token[0;m=ozA_dnFp | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=67814 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272583 responseStatus[0;m=201 Created token[0;m=ozA_dnFp | |
| section_end:1655887316:upload_artifacts_on_success [0Ksection_start:1655887316:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655887317:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655887471:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655887471:resolve_secrets [0Ksection_start:1655887471:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor786014984, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61703, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272597 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J272597_PROD_P112_CP5_C3 | |
| Job parameters: memory=76G, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563805 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=76G --job-name=GL_J272597_PROD_P112_CP5_C3 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --ntasks=16 --jobid=563805 --cpus-per-task=1 --mem=76G | |
| section_end:1655887473:prepare_executor [0Ksection_start:1655887473:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i7n22 via bbpv1.epfl.ch... | |
| section_end:1655887476:prepare_script [0Ksection_start:1655887476:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655887477:get_sources [0Ksection_start:1655887477:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron:mod2c:intel (272576)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=220761 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272576 responseStatus[0;m=200 OK token[0;m=Drd-tPsG | |
| section_end:1655887479:download_artifacts [0Ksection_start:1655887479:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i7n22 | |
| Build name: Linux-icpc | |
| Create new tag: 20220622-0845 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272576/spack-build/spack-stage-neuron-develop-5rhr7pzdmuyym5ch4jvmvyd7544mkxl4/spack-build-5rhr7pz | |
| Start 49: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 56: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 62: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| Start 68: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| Start 74: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| Start 80: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| Start 85: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| Start 91: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| Start 97: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 1/121 Test #56: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 2.31 sec | |
| Start 44: external_ringtest::neuron | |
| 2/121 Test #68: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 2.65 sec | |
| Start 52: testcorenrn_bbcore::neuron | |
| 3/121 Test #62: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 2.76 sec | |
| Start 53: testcorenrn_bbcore::coreneuron_cpu_online | |
| 4/121 Test #80: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 3.04 sec | |
| Start 54: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 5/121 Test #91: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 4.40 sec | |
| Start 103: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 6/121 Test #74: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 4.48 sec | |
| Start 45: external_ringtest::neuron_mpi | |
| 7/121 Test #85: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 4.84 sec | |
| Start 46: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
| 8/121 Test #97: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 5.27 sec | |
| Start 118: olfactory-bulb-3d::neuron::preparation | |
| 9/121 Test #118: olfactory-bulb-3d::neuron::preparation ............................. Passed 0.05 sec | |
| Start 120: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| 10/121 Test #120: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............. Passed 0.02 sec | |
| Start 41: reduced_dentate::neuron | |
| 11/121 Test #52: testcorenrn_bbcore::neuron ......................................... Passed 2.70 sec | |
| Start 55: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 12/121 Test #44: external_ringtest::neuron .......................................... Passed 3.20 sec | |
| Start 58: testcorenrn_conc::neuron | |
| 13/121 Test #49: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 5.70 sec | |
| Start 47: external_ringtest::coreneuron_cpu_mpi | |
| 14/121 Test #53: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 3.24 sec | |
| Start 59: testcorenrn_conc::coreneuron_cpu_online | |
| 15/121 Test #54: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 3.21 sec | |
| Start 60: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 16/121 Test #103: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 2.11 sec | |
| Start 48: external_ringtest::coreneuron_cpu_mpi_offline | |
| 17/121 Test #55: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 1.97 sec | |
| Start 61: testcorenrn_conc::coreneuron_cpu_offline | |
| 18/121 Test #58: testcorenrn_conc::neuron ........................................... Passed 2.87 sec | |
| Start 64: testcorenrn_deriv::neuron | |
| 19/121 Test #45: external_ringtest::neuron_mpi ...................................... Passed 4.07 sec | |
| Start 65: testcorenrn_deriv::coreneuron_cpu_online | |
| Start 66: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 20/121 Test #61: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 2.02 sec | |
| Start 67: testcorenrn_deriv::coreneuron_cpu_offline | |
| 21/121 Test #64: testcorenrn_deriv::neuron .......................................... Passed 2.13 sec | |
| Start 76: testcorenrn_kin::neuron | |
| 22/121 Test #60: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 4.88 sec | |
| Start 77: testcorenrn_kin::coreneuron_cpu_online | |
| 23/121 Test #67: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 1.73 sec | |
| Start 78: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 24/121 Test #66: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 3.44 sec | |
| Start 79: testcorenrn_kin::coreneuron_cpu_offline | |
| 25/121 Test #65: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 3.96 sec | |
| Start 109: channel_benchmark_hippo::neuron | |
| 26/121 Test #48: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 6.65 sec | |
| Start 70: testcorenrn_gf::neuron | |
| 27/121 Test #76: testcorenrn_kin::neuron ............................................ Passed 2.60 sec | |
| Start 110: channel_benchmark_hippo::coreneuron_cpu_online | |
| 28/121 Test #79: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 1.73 sec | |
| Start 111: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 29/121 Test #59: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 8.22 sec | |
| Start 113: channel_benchmark_sscx::neuron | |
| 30/121 Test #77: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 3.17 sec | |
| Start 114: channel_benchmark_sscx::coreneuron_cpu_online | |
| 31/121 Test #78: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 5.45 sec | |
| Start 115: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 32/121 Test #70: testcorenrn_gf::neuron ............................................. Passed 16.90 sec | |
| Start 71: testcorenrn_gf::coreneuron_cpu_online | |
| 33/121 Test #71: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 13.07 sec | |
| Start 72: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 34/121 Test #46: external_ringtest::coreneuron_cpu_mpi_offline_saverestore .......... Passed 94.50 sec | |
| Start 73: testcorenrn_gf::coreneuron_cpu_offline | |
| 35/121 Test #41: reduced_dentate::neuron ............................................ Passed 96.52 sec | |
| Start 42: reduced_dentate::coreneuron_cpu | |
| 36/121 Test #73: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 9.33 sec | |
| Start 82: testcorenrn_patstim::neuron | |
| 37/121 Test #82: testcorenrn_patstim::neuron ........................................ Passed 20.82 sec | |
| Start 83: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
| 38/121 Test #47: external_ringtest::coreneuron_cpu_mpi .............................. Passed 126.14 sec | |
| Start 84: testcorenrn_patstim::coreneuron_cpu_offline | |
| 39/121 Test #84: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 9.50 sec | |
| Start 87: testcorenrn_vecplay::neuron | |
| 40/121 Test #87: testcorenrn_vecplay::neuron ........................................ Passed 5.01 sec | |
| Start 88: testcorenrn_vecplay::coreneuron_cpu_online | |
| 41/121 Test #88: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 9.46 sec | |
| Start 89: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 42/121 Test #72: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 113.83 sec | |
| Start 90: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 43/121 Test #90: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 4.15 sec | |
| Start 99: testcorenrn_watch::neuron | |
| 44/121 Test #99: testcorenrn_watch::neuron .......................................... Passed 4.63 sec | |
| Start 100: testcorenrn_watch::coreneuron_cpu_online | |
| 45/121 Test #114: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 153.74 sec | |
| Start 1: testneuron | |
| 46/121 Test #1: testneuron ......................................................... Passed 0.09 sec | |
| Start 2: ringtest | |
| 47/121 Test #2: ringtest ........................................................... Passed 1.17 sec | |
| Start 3: connect_dend | |
| 48/121 Test #3: connect_dend ....................................................... Passed 0.92 sec | |
| Start 4: mpi_init::nrniv_mpiopt | |
| 49/121 Test #89: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 15.16 sec | |
| Start 101: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 50/121 Test #113: channel_benchmark_sscx::neuron ..................................... Passed 156.90 sec | |
| Start 5: mpi_init::nrniv_nrnmpi_init | |
| 51/121 Test #5: mpi_init::nrniv_nrnmpi_init ........................................ Passed 1.09 sec | |
| Start 6: mpi_init::python_nrnmpi_init | |
| 52/121 Test #115: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 156.25 sec | |
| Start 7: mpi_init::python_mpienv | |
| 53/121 Test #111: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 160.25 sec | |
| Start 8: mpi_init::nrniv_mpiexec_mpiopt | |
| 54/121 Test #4: mpi_init::nrniv_mpiopt ............................................. Passed 5.32 sec | |
| Start 9: mpi_init::nrniv_mpiexec_nrnmpi_init | |
| 55/121 Test #109: channel_benchmark_hippo::neuron .................................... Passed 164.96 sec | |
| Start 10: mpi_init::python_mpiexec_nrnmpi_init | |
| 56/121 Test #110: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 166.18 sec | |
| Start 11: mpi_init::python_mpiexec_mpienv | |
| 57/121 Test #100: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 17.00 sec | |
| Start 102: testcorenrn_watch::coreneuron_cpu_offline | |
| 58/121 Test #9: mpi_init::nrniv_mpiexec_nrnmpi_init ................................ Passed 9.58 sec | |
| Start 12: pynrn::basic_tests | |
| 59/121 Test #8: mpi_init::nrniv_mpiexec_mpiopt ..................................... Passed 11.92 sec | |
| Start 13: coverage_tests::cover_tests | |
| 60/121 Test #83: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............ Passed 58.25 sec | |
| Start 105: testcorenrn_netstimdirect::direct_netstimdirect | |
| 61/121 Test #7: mpi_init::python_mpienv ............................................ Passed 16.82 sec | |
| Start 14: parallel_tests | |
| 62/121 Test #102: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 11.12 sec | |
| Start 106: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 63/121 Test #6: mpi_init::python_nrnmpi_init ....................................... Passed 22.14 sec | |
| Start 15: parallel_partrans | |
| 64/121 Test #10: mpi_init::python_mpiexec_nrnmpi_init ............................... Passed 22.31 sec | |
| Start 16: parallel_netpar | |
| 65/121 Test #101: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 29.75 sec | |
| Start 17: parallel_bas | |
| Start 18: coreneuron_modtests::version_macros | |
| 66/121 Test #42: reduced_dentate::coreneuron_cpu .................................... Passed 103.09 sec | |
| Start 93: testcorenrn_vecevent::neuron | |
| 67/121 Test #11: mpi_init::python_mpiexec_mpienv .................................... Passed 28.52 sec | |
| Start 19: coreneuron_modtests::fornetcon_py_cpu | |
| 68/121 Test #105: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 32.69 sec | |
| Start 20: coreneuron_modtests::direct_py_cpu | |
| Start 21: coreneuron_modtests::direct_hoc_cpu | |
| 69/121 Test #14: parallel_tests ..................................................... Passed 38.81 sec | |
| Start 22: coreneuron_modtests::spikes_py_cpu | |
| 70/121 Test #15: parallel_partrans .................................................. Passed 40.03 sec | |
| Start 23: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 71/121 Test #106: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 42.62 sec | |
| Start 24: coreneuron_modtests::fast_imem_py_cpu | |
| Start 25: coreneuron_modtests::datareturn_py_cpu | |
| 72/121 Test #21: coreneuron_modtests::direct_hoc_cpu ................................ Passed 18.49 sec | |
| Start 26: coreneuron_modtests::test_units_py_cpu | |
| 73/121 Test #16: parallel_netpar .................................................... Passed 39.76 sec | |
| Start 27: coreneuron_modtests::test_netmove_py_cpu | |
| 74/121 Test #93: testcorenrn_vecevent::neuron ....................................... Passed 35.22 sec | |
| Start 94: testcorenrn_vecevent::coreneuron_cpu_online | |
| 75/121 Test #18: coreneuron_modtests::version_macros ................................ Passed 45.43 sec | |
| Start 28: coreneuron_modtests::test_pointer_py_cpu | |
| 76/121 Test #13: coverage_tests::cover_tests ........................................ Passed 62.70 sec | |
| Start 29: coreneuron_modtests::test_watchrange_py_cpu | |
| 77/121 Test #19: coreneuron_modtests::fornetcon_py_cpu .............................. Passed 66.38 sec | |
| Start 30: coreneuron_modtests::test_psolve_py_cpu | |
| 78/121 Test #20: coreneuron_modtests::direct_py_cpu ................................. Passed 57.05 sec | |
| Start 31: coreneuron_modtests::test_ba_py_cpu | |
| 79/121 Test #23: coreneuron_modtests::spikes_file_mode_py_cpu ....................... Passed 51.37 sec | |
| Start 32: coreneuron_modtests::test_natrans_py_cpu | |
| 80/121 Test #25: coreneuron_modtests::datareturn_py_cpu ............................. Passed 52.10 sec | |
| Start 36: modlunit_unitstest | |
| 81/121 Test #36: modlunit_unitstest ................................................. Passed 1.05 sec | |
| Start 37: modlunit_hh | |
| 82/121 Test #37: modlunit_hh ........................................................ Passed 0.03 sec | |
| Start 38: modlunit_stim | |
| 83/121 Test #22: coreneuron_modtests::spikes_py_cpu ................................. Passed 61.92 sec | |
| Start 39: modlunit_pattern | |
| 84/121 Test #38: modlunit_stim ...................................................... Passed 0.41 sec | |
| Start 40: external_nrntest | |
| 85/121 Test #39: modlunit_pattern ................................................... Passed 0.71 sec | |
| Start 43: reduced_dentate::compare_results | |
| 86/121 Test #43: reduced_dentate::compare_results ................................... Passed 2.04 sec | |
| Start 57: testcorenrn_bbcore::compare_results | |
| 87/121 Test #24: coreneuron_modtests::fast_imem_py_cpu .............................. Passed 57.13 sec | |
| Start 63: testcorenrn_conc::compare_results | |
| 88/121 Test #63: testcorenrn_conc::compare_results .................................. Passed 2.97 sec | |
| Start 69: testcorenrn_deriv::compare_results | |
| 89/121 Test #94: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 56.92 sec | |
| Start 95: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 90/121 Test #26: coreneuron_modtests::test_units_py_cpu ............................. Passed 58.44 sec | |
| Start 75: testcorenrn_gf::compare_results | |
| 91/121 Test #57: testcorenrn_bbcore::compare_results ................................ Passed 7.84 sec | |
| Start 81: testcorenrn_kin::compare_results | |
| 92/121 Test #69: testcorenrn_deriv::compare_results ................................. Passed 5.56 sec | |
| Start 86: testcorenrn_patstim::compare_results | |
| 93/121 Test #75: testcorenrn_gf::compare_results .................................... Passed 5.39 sec | |
| Start 92: testcorenrn_vecplay::compare_results | |
| 94/121 Test #27: coreneuron_modtests::test_netmove_py_cpu ........................... Passed 63.93 sec | |
| Start 104: testcorenrn_watch::compare_results | |
| 95/121 Test #81: testcorenrn_kin::compare_results ................................... Passed 4.47 sec | |
| Start 107: testcorenrn_netstimdirect::compare_results | |
| 96/121 Test #92: testcorenrn_vecplay::compare_results ............................... Passed 4.96 sec | |
| Start 112: channel_benchmark_hippo::compare_results | |
| 97/121 Test #104: testcorenrn_watch::compare_results ................................. Passed 5.05 sec | |
| Start 116: channel_benchmark_sscx::compare_results | |
| 98/121 Test #86: testcorenrn_patstim::compare_results ............................... Passed 6.44 sec | |
| 99/121 Test #29: coreneuron_modtests::test_watchrange_py_cpu ........................ Passed 61.93 sec | |
| Start 33: coreneuron_modtests::spikes_mpi_py_cpu | |
| 100/121 Test #107: testcorenrn_netstimdirect::compare_results ......................... Passed 5.98 sec | |
| 101/121 Test #116: channel_benchmark_sscx::compare_results ............................ Passed 5.72 sec | |
| Start 34: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 102/121 Test #112: channel_benchmark_hippo::compare_results ........................... Passed 6.37 sec | |
| 103/121 Test #17: parallel_bas ....................................................... Passed 114.66 sec | |
| Start 35: coreneuron_modtests::inputpresyn_py_cpu | |
| 104/121 Test #30: coreneuron_modtests::test_psolve_py_cpu ............................ Passed 56.47 sec | |
| 105/121 Test #28: coreneuron_modtests::test_pointer_py_cpu ........................... Passed 93.72 sec | |
| 106/121 Test #95: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 49.17 sec | |
| Start 50: external_ringtest::coreneuron_cpu_mpi_threads | |
| 107/121 Test #33: coreneuron_modtests::spikes_mpi_py_cpu ............................. Passed 35.82 sec | |
| 108/121 Test #31: coreneuron_modtests::test_ba_py_cpu ................................ Passed 71.16 sec | |
| 109/121 Test #35: coreneuron_modtests::inputpresyn_py_cpu ............................ Passed 34.73 sec | |
| Start 96: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 110/121 Test #34: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................... Passed 36.69 sec | |
| 111/121 Test #32: coreneuron_modtests::test_natrans_py_cpu ........................... Passed 66.60 sec | |
| Start 117: olfactory-bulb-3d::neuron | |
| 112/121 Test #12: pynrn::basic_tests ................................................. Passed 168.88 sec | |
| 113/121 Test #96: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 15.86 sec | |
| Start 119: olfactory-bulb-3d::coreneuron_cpu_online | |
| Start 98: testcorenrn_vecevent::compare_results | |
| 114/121 Test #98: testcorenrn_vecevent::compare_results .............................. Passed 5.20 sec | |
| 115/121 Test #50: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 35.25 sec | |
| Start 51: external_ringtest::compare_results | |
| 116/121 Test #51: external_ringtest::compare_results ................................. Passed 5.47 sec | |
| 117/121 Test #117: olfactory-bulb-3d::neuron .......................................... Passed 153.25 sec | |
| 118/121 Test #119: olfactory-bulb-3d::coreneuron_cpu_online ........................... Passed 175.07 sec | |
| Start 121: olfactory-bulb-3d::compare_results | |
| 119/121 Test #121: olfactory-bulb-3d::compare_results ................................. Passed 0.22 sec | |
| 120/121 Test #40: external_nrntest ................................................... Passed 355.91 sec | |
| Start 108: tqperf::coreneuron | |
| 121/121 Test #108: tqperf::coreneuron ................................................. Passed 6.96 sec | |
| 100% tests passed, 0 tests failed out of 121 | |
| Total Test time (real) = 653.68 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1655888169:step_script [0Ksection_start:1655888169:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=248561 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272597 responseStatus[0;m=201 Created token[0;m=kDxwMzx7 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=248634 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272597 responseStatus[0;m=201 Created token[0;m=kDxwMzx7 | |
| section_end:1655888171:upload_artifacts_on_success [0Ksection_start:1655888171:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655888172:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655887549:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655887549:resolve_secrets [0Ksection_start:1655887549:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor231364682, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61703, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272591 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J272591_PROD_P112_CP1_C1 | |
| Job parameters: memory=76G, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 563810 | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=76G --job-name=GL_J272591_PROD_P112_CP1_C1 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --ntasks=16 --jobid=563810 --cpus-per-task=1 --mem=76G | |
| section_end:1655887571:prepare_executor [0Ksection_start:1655887571:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch... | |
| section_end:1655887579:prepare_script [0Ksection_start:1655887579:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655887580:get_sources [0Ksection_start:1655887580:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron:mod2c:nvhpc:acc (272570)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=69260 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272570 responseStatus[0;m=200 OK token[0;m=GfgP22x2 | |
| section_end:1655887581:download_artifacts [0Ksection_start:1655887581:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i7n28 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220622-0846 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272570/spack-build/spack-stage-neuron-develop-mqy2bmic4al44uogrem4llrvfdch65dy/spack-build-mqy2bmi | |
| Start 67: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 72: external_ringtest::coreneuron_gpu_mpi_offline::preparation | |
| Start 79: testcorenrn_bbcore::coreneuron_gpu_offline::preparation | |
| Start 83: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 89: testcorenrn_conc::coreneuron_gpu_offline::preparation | |
| Start 93: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| Start 99: testcorenrn_deriv::coreneuron_gpu_offline::preparation | |
| Start 103: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| Start 109: testcorenrn_gf::coreneuron_gpu_offline::preparation | |
| Start 113: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| Start 119: testcorenrn_kin::coreneuron_gpu_offline::preparation | |
| Start 123: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| 1/185 Test #89: testcorenrn_conc::coreneuron_gpu_offline::preparation .............. Passed 2.74 sec | |
| Start 128: testcorenrn_patstim::coreneuron_gpu_offline::preparation | |
| 2/185 Test #79: testcorenrn_bbcore::coreneuron_gpu_offline::preparation ............ Passed 2.78 sec | |
| Start 62: external_ringtest::neuron | |
| 3/185 Test #83: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 2.87 sec | |
| Start 75: testcorenrn_bbcore::neuron | |
| 4/185 Test #123: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 3.12 sec | |
| Start 76: testcorenrn_bbcore::coreneuron_gpu_online | |
| 5/185 Test #103: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 3.18 sec | |
| Start 77: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate | |
| 6/185 Test #93: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 3.22 sec | |
| Start 78: testcorenrn_bbcore::coreneuron_gpu_offline | |
| 7/185 Test #119: testcorenrn_kin::coreneuron_gpu_offline::preparation ............... Passed 3.21 sec | |
| Start 80: testcorenrn_bbcore::coreneuron_cpu_online | |
| 8/185 Test #99: testcorenrn_deriv::coreneuron_gpu_offline::preparation ............. Passed 3.32 sec | |
| Start 81: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 9/185 Test #62: external_ringtest::neuron .......................................... Passed 1.27 sec | |
| Start 82: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 10/185 Test #113: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 4.39 sec | |
| Start 131: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| 11/185 Test #109: testcorenrn_gf::coreneuron_gpu_offline::preparation ................ Passed 4.69 sec | |
| Start 137: testcorenrn_vecplay::coreneuron_gpu_offline::preparation | |
| 12/185 Test #128: testcorenrn_patstim::coreneuron_gpu_offline::preparation ........... Passed 4.13 sec | |
| Start 85: testcorenrn_conc::neuron | |
| 13/185 Test #75: testcorenrn_bbcore::neuron ......................................... Passed 4.02 sec | |
| Start 86: testcorenrn_conc::coreneuron_gpu_online | |
| 14/185 Test #131: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 3.10 sec | |
| Start 141: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 15/185 Test #137: testcorenrn_vecplay::coreneuron_gpu_offline::preparation ........... Passed 3.12 sec | |
| Start 157: testcorenrn_watch::coreneuron_gpu_offline::preparation | |
| 16/185 Test #85: testcorenrn_conc::neuron ........................................... Passed 1.59 sec | |
| Start 87: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate | |
| 17/185 Test #157: testcorenrn_watch::coreneuron_gpu_offline::preparation ............. Passed 1.66 sec | |
| Start 161: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 18/185 Test #141: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 2.11 sec | |
| Start 63: external_ringtest::neuron_mpi | |
| 19/185 Test #161: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 3.09 sec | |
| Start 64: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
| 20/185 Test #80: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 9.46 sec | |
| Start 88: testcorenrn_conc::coreneuron_gpu_offline | |
| 21/185 Test #82: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 12.07 sec | |
| Start 90: testcorenrn_conc::coreneuron_cpu_online | |
| 22/185 Test #81: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 13.91 sec | |
| Start 91: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 23/185 Test #78: testcorenrn_bbcore::coreneuron_gpu_offline ......................... Passed 17.00 sec | |
| Start 92: testcorenrn_conc::coreneuron_cpu_offline | |
| 24/185 Test #76: testcorenrn_bbcore::coreneuron_gpu_online .......................... Passed 19.48 sec | |
| Start 95: testcorenrn_deriv::neuron | |
| 25/185 Test #63: external_ringtest::neuron_mpi ...................................... Passed 13.08 sec | |
| Start 65: external_ringtest::coreneuron_cpu_mpi | |
| 26/185 Test #77: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate ......... Passed 19.54 sec | |
| Start 96: testcorenrn_deriv::coreneuron_gpu_online | |
| 27/185 Test #72: external_ringtest::coreneuron_gpu_mpi_offline::preparation ......... Passed 22.96 sec | |
| Start 69: external_ringtest::coreneuron_gpu_mpi_offline_saverestore | |
| 28/185 Test #67: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 23.02 sec | |
| Start 66: external_ringtest::coreneuron_cpu_mpi_offline | |
| 29/185 Test #86: testcorenrn_conc::coreneuron_gpu_online ............................ Passed 16.21 sec | |
| Start 97: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate | |
| 30/185 Test #88: testcorenrn_conc::coreneuron_gpu_offline ........................... Passed 10.67 sec | |
| Start 98: testcorenrn_deriv::coreneuron_gpu_offline | |
| 31/185 Test #87: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate ........... Passed 15.06 sec | |
| Start 100: testcorenrn_deriv::coreneuron_cpu_online | |
| 32/185 Test #95: testcorenrn_deriv::neuron .......................................... Passed 2.75 sec | |
| Start 101: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 33/185 Test #90: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 12.33 sec | |
| Start 102: testcorenrn_deriv::coreneuron_cpu_offline | |
| 34/185 Test #91: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 11.24 sec | |
| Start 115: testcorenrn_kin::neuron | |
| 35/185 Test #92: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 8.32 sec | |
| Start 116: testcorenrn_kin::coreneuron_gpu_online | |
| 36/185 Test #115: testcorenrn_kin::neuron ............................................ Passed 1.76 sec | |
| Start 117: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate | |
| 37/185 Test #100: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 14.36 sec | |
| Start 118: testcorenrn_kin::coreneuron_gpu_offline | |
| 38/185 Test #98: testcorenrn_deriv::coreneuron_gpu_offline .......................... Passed 14.56 sec | |
| Start 120: testcorenrn_kin::coreneuron_cpu_online | |
| 39/185 Test #66: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 15.11 sec | |
| Start 70: external_ringtest::coreneuron_gpu_mpi | |
| 40/185 Test #101: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 12.96 sec | |
| Start 121: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 41/185 Test #96: testcorenrn_deriv::coreneuron_gpu_online ........................... Passed 15.65 sec | |
| Start 122: testcorenrn_kin::coreneuron_cpu_offline | |
| 42/185 Test #65: external_ringtest::coreneuron_cpu_mpi .............................. Passed 15.82 sec | |
| Start 71: external_ringtest::coreneuron_gpu_mpi_offline | |
| 43/185 Test #97: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate .......... Passed 16.27 sec | |
| Start 126: testcorenrn_patstim::coreneuron_gpu_offline_saverestore | |
| 44/185 Test #102: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 17.73 sec | |
| Start 127: testcorenrn_patstim::coreneuron_gpu_offline | |
| 45/185 Test #116: testcorenrn_kin::coreneuron_gpu_online ............................. Passed 17.73 sec | |
| Start 167: channel_benchmark_hippo::neuron | |
| 46/185 Test #117: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate ............ Passed 16.29 sec | |
| Start 168: channel_benchmark_hippo::coreneuron_gpu_online | |
| 47/185 Test #118: testcorenrn_kin::coreneuron_gpu_offline ............................ Passed 13.99 sec | |
| Start 169: channel_benchmark_hippo::coreneuron_gpu_filemode | |
| 48/185 Test #122: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 17.01 sec | |
| Start 170: channel_benchmark_hippo::coreneuron_cpu_online | |
| 49/185 Test #120: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 20.53 sec | |
| Start 171: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 50/185 Test #121: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 22.01 sec | |
| Start 173: channel_benchmark_sscx::neuron | |
| 51/185 Test #127: testcorenrn_patstim::coreneuron_gpu_offline ........................ Passed 29.51 sec | |
| Start 174: channel_benchmark_sscx::coreneuron_gpu_online | |
| 52/185 Test #71: external_ringtest::coreneuron_gpu_mpi_offline ...................... Passed 40.55 sec | |
| Start 105: testcorenrn_gf::neuron | |
| 53/185 Test #70: external_ringtest::coreneuron_gpu_mpi .............................. Passed 44.19 sec | |
| Start 106: testcorenrn_gf::coreneuron_gpu_online | |
| 54/185 Test #126: testcorenrn_patstim::coreneuron_gpu_offline_saverestore ............ Passed 45.62 sec | |
| Start 175: channel_benchmark_sscx::coreneuron_gpu_filemode | |
| 55/185 Test #105: testcorenrn_gf::neuron ............................................. Passed 8.27 sec | |
| Start 107: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate | |
| 56/185 Test #64: external_ringtest::coreneuron_cpu_mpi_offline_saverestore .......... Passed 99.05 sec | |
| Start 108: testcorenrn_gf::coreneuron_gpu_offline | |
| 57/185 Test #69: external_ringtest::coreneuron_gpu_mpi_offline_saverestore .......... Passed 106.54 sec | |
| Start 110: testcorenrn_gf::coreneuron_cpu_online | |
| 58/185 Test #106: testcorenrn_gf::coreneuron_gpu_online .............................. Passed 63.34 sec | |
| Start 111: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 59/185 Test #108: testcorenrn_gf::coreneuron_gpu_offline ............................. Passed 56.95 sec | |
| Start 112: testcorenrn_gf::coreneuron_cpu_offline | |
| 60/185 Test #107: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate ............. Passed 101.37 sec | |
| Start 125: testcorenrn_patstim::neuron | |
| 61/185 Test #125: testcorenrn_patstim::neuron ........................................ Passed 3.47 sec | |
| Start 129: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
| 62/185 Test #167: channel_benchmark_hippo::neuron .................................... Passed 170.30 sec | |
| Start 176: channel_benchmark_sscx::coreneuron_cpu_online | |
| 63/185 Test #173: channel_benchmark_sscx::neuron ..................................... Passed 160.31 sec | |
| Start 177: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 64/185 Test #111: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 89.15 sec | |
| Start 130: testcorenrn_patstim::coreneuron_cpu_offline | |
| 65/185 Test #110: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 105.84 sec | |
| Start 133: testcorenrn_vecplay::neuron | |
| 66/185 Test #112: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 66.83 sec | |
| Start 134: testcorenrn_vecplay::coreneuron_gpu_online | |
| 67/185 Test #133: testcorenrn_vecplay::neuron ........................................ Passed 2.24 sec | |
| Start 135: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate | |
| 68/185 Test #168: channel_benchmark_hippo::coreneuron_gpu_online ..................... Passed 222.11 sec | |
| Start 1: testneuron | |
| 69/185 Test #1: testneuron ......................................................... Passed 0.06 sec | |
| Start 2: ringtest | |
| 70/185 Test #2: ringtest ........................................................... Passed 0.25 sec | |
| Start 3: connect_dend | |
| 71/185 Test #3: connect_dend ....................................................... Passed 0.25 sec | |
| Start 4: mpi_init::nrniv_mpiopt | |
| 72/185 Test #4: mpi_init::nrniv_mpiopt ............................................. Passed 0.19 sec | |
| Start 5: mpi_init::nrniv_nrnmpi_init | |
| 73/185 Test #5: mpi_init::nrniv_nrnmpi_init ........................................ Passed 0.08 sec | |
| Start 6: mpi_init::python_nrnmpi_init | |
| 74/185 Test #6: mpi_init::python_nrnmpi_init ....................................... Passed 0.33 sec | |
| Start 7: mpi_init::python_mpienv | |
| 75/185 Test #7: mpi_init::python_mpienv ............................................ Passed 0.39 sec | |
| Start 8: mpi_init::nrniv_mpiexec_mpiopt | |
| 76/185 Test #8: mpi_init::nrniv_mpiexec_mpiopt ..................................... Passed 1.30 sec | |
| Start 9: mpi_init::nrniv_mpiexec_nrnmpi_init | |
| 77/185 Test #170: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 216.59 sec | |
| Start 10: mpi_init::python_mpiexec_nrnmpi_init | |
| 78/185 Test #169: channel_benchmark_hippo::coreneuron_gpu_filemode ................... Passed 220.30 sec | |
| Start 11: mpi_init::python_mpiexec_mpienv | |
| 79/185 Test #9: mpi_init::nrniv_mpiexec_nrnmpi_init ................................ Passed 1.36 sec | |
| Start 12: pynrn::basic_tests | |
| 80/185 Test #10: mpi_init::python_mpiexec_nrnmpi_init ............................... Passed 1.71 sec | |
| Start 13: coverage_tests::cover_tests | |
| 81/185 Test #11: mpi_init::python_mpiexec_mpienv .................................... Passed 3.23 sec | |
| Start 14: parallel_tests | |
| 82/185 Test #13: coverage_tests::cover_tests ........................................ Passed 3.41 sec | |
| Start 15: parallel_partrans | |
| 83/185 Test #15: parallel_partrans .................................................. Passed 1.70 sec | |
| Start 16: parallel_netpar | |
| 84/185 Test #16: parallel_netpar .................................................... Passed 2.22 sec | |
| Start 17: parallel_bas | |
| 85/185 Test #17: parallel_bas ....................................................... Passed 11.11 sec | |
| Start 18: coreneuron_modtests::version_macros | |
| 86/185 Test #14: parallel_tests ..................................................... Passed 17.34 sec | |
| Start 19: coreneuron_modtests::fornetcon_py_cpu | |
| 87/185 Test #171: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 236.15 sec | |
| Start 20: coreneuron_modtests::direct_py_cpu | |
| 88/185 Test #175: channel_benchmark_sscx::coreneuron_gpu_filemode .................... Passed 210.33 sec | |
| Start 21: coreneuron_modtests::direct_hoc_cpu | |
| 89/185 Test #174: channel_benchmark_sscx::coreneuron_gpu_online ...................... Passed 219.66 sec | |
| Start 22: coreneuron_modtests::spikes_py_cpu | |
| 90/185 Test #12: pynrn::basic_tests ................................................. Passed 25.84 sec | |
| Start 23: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 91/185 Test #130: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 86.68 sec | |
| Start 136: testcorenrn_vecplay::coreneuron_gpu_offline | |
| 92/185 Test #176: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 114.06 sec | |
| Start 24: coreneuron_modtests::fast_imem_py_cpu | |
| 93/185 Test #24: coreneuron_modtests::fast_imem_py_cpu .............................. Passed 0.59 sec | |
| Start 25: coreneuron_modtests::datareturn_py_cpu | |
| 94/185 Test #134: testcorenrn_vecplay::coreneuron_gpu_online ......................... Passed 96.27 sec | |
| Start 138: testcorenrn_vecplay::coreneuron_cpu_online | |
| 95/185 Test #177: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 119.63 sec | |
| Start 26: coreneuron_modtests::test_units_py_cpu | |
| 96/185 Test #129: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............ Passed 157.14 sec | |
| Start 139: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 97/185 Test #135: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate ........ Passed 132.43 sec | |
| Start 140: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 98/185 Test #18: coreneuron_modtests::version_macros ................................ Passed 85.85 sec | |
| Start 27: coreneuron_modtests::test_netmove_py_cpu | |
| 99/185 Test #20: coreneuron_modtests::direct_py_cpu ................................. Passed 86.93 sec | |
| Start 28: coreneuron_modtests::test_pointer_py_cpu | |
| 100/185 Test #22: coreneuron_modtests::spikes_py_cpu ................................. Passed 86.42 sec | |
| Start 29: coreneuron_modtests::test_watchrange_py_cpu | |
| 101/185 Test #19: coreneuron_modtests::fornetcon_py_cpu .............................. Passed 89.13 sec | |
| Start 30: coreneuron_modtests::test_psolve_py_cpu | |
| 102/185 Test #21: coreneuron_modtests::direct_hoc_cpu ................................ Passed 87.27 sec | |
| Start 31: coreneuron_modtests::test_ba_py_cpu | |
| 103/185 Test #23: coreneuron_modtests::spikes_file_mode_py_cpu ....................... Passed 85.39 sec | |
| Start 32: coreneuron_modtests::test_natrans_py_cpu | |
| 104/185 Test #25: coreneuron_modtests::datareturn_py_cpu ............................. Passed 83.16 sec | |
| Start 36: coreneuron_modtests::fornetcon_py_gpu | |
| 105/185 Test #136: testcorenrn_vecplay::coreneuron_gpu_offline ........................ Passed 94.68 sec | |
| Start 153: testcorenrn_watch::neuron | |
| 106/185 Test #153: testcorenrn_watch::neuron .......................................... Passed 1.56 sec | |
| Start 154: testcorenrn_watch::coreneuron_gpu_online | |
| 107/185 Test #26: coreneuron_modtests::test_units_py_cpu ............................. Passed 78.30 sec | |
| Start 37: coreneuron_modtests::direct_py_gpu | |
| 108/185 Test #139: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 73.57 sec | |
| Start 155: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate | |
| 109/185 Test #138: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 92.97 sec | |
| Start 156: testcorenrn_watch::coreneuron_gpu_offline | |
| 110/185 Test #31: coreneuron_modtests::test_ba_py_cpu ................................ Passed 49.48 sec | |
| Start 38: coreneuron_modtests::direct_hoc_gpu | |
| 111/185 Test #32: coreneuron_modtests::test_natrans_py_cpu ........................... Passed 82.53 sec | |
| Start 39: coreneuron_modtests::spikes_py_gpu | |
| 112/185 Test #30: coreneuron_modtests::test_psolve_py_cpu ............................ Passed 84.82 sec | |
| Start 40: coreneuron_modtests::spikes_file_mode_py_gpu | |
| 113/185 Test #27: coreneuron_modtests::test_netmove_py_cpu ........................... Passed 89.36 sec | |
| Start 41: coreneuron_modtests::fast_imem_py_gpu | |
| 114/185 Test #29: coreneuron_modtests::test_watchrange_py_cpu ........................ Passed 85.62 sec | |
| Start 42: coreneuron_modtests::datareturn_py_gpu | |
| 115/185 Test #41: coreneuron_modtests::fast_imem_py_gpu .............................. Passed 0.83 sec | |
| Start 43: coreneuron_modtests::test_units_py_gpu | |
| 116/185 Test #140: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 98.20 sec | |
| Start 158: testcorenrn_watch::coreneuron_cpu_online | |
| 117/185 Test #36: coreneuron_modtests::fornetcon_py_gpu .............................. Passed 85.01 sec | |
| Start 44: coreneuron_modtests::test_netmove_py_gpu | |
| 118/185 Test #38: coreneuron_modtests::direct_hoc_gpu ................................ Passed 82.37 sec | |
| Start 45: coreneuron_modtests::test_pointer_py_gpu | |
| 119/185 Test #37: coreneuron_modtests::direct_py_gpu ................................. Passed 96.49 sec | |
| Start 46: coreneuron_modtests::test_watchrange_py_gpu | |
| 120/185 Test #154: testcorenrn_watch::coreneuron_gpu_online ........................... Passed 98.70 sec | |
| Start 159: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 121/185 Test #156: testcorenrn_watch::coreneuron_gpu_offline .......................... Passed 98.73 sec | |
| Start 160: testcorenrn_watch::coreneuron_cpu_offline | |
| 122/185 Test #40: coreneuron_modtests::spikes_file_mode_py_gpu ....................... Passed 63.04 sec | |
| Start 47: coreneuron_modtests::test_psolve_py_gpu | |
| 123/185 Test #39: coreneuron_modtests::spikes_py_gpu ................................. Passed 63.31 sec | |
| Start 48: coreneuron_modtests::test_ba_py_gpu | |
| 124/185 Test #43: coreneuron_modtests::test_units_py_gpu ............................. Passed 90.79 sec | |
| Start 49: coreneuron_modtests::test_natrans_py_gpu | |
| 125/185 Test #42: coreneuron_modtests::datareturn_py_gpu ............................. Passed 91.73 sec | |
| Start 53: modlunit_unitstest | |
| 126/185 Test #53: modlunit_unitstest ................................................. Passed 0.02 sec | |
| Start 54: modlunit_hh | |
| 127/185 Test #54: modlunit_hh ........................................................ Passed 0.02 sec | |
| Start 55: modlunit_stim | |
| 128/185 Test #55: modlunit_stim ...................................................... Passed 0.01 sec | |
| Start 56: modlunit_pattern | |
| 129/185 Test #56: modlunit_pattern ................................................... Passed 0.01 sec | |
| Start 57: external_nrntest | |
| 130/185 Test #155: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate .......... Passed 137.16 sec | |
| Start 163: testcorenrn_netstimdirect::direct_netstimdirect | |
| 131/185 Test #158: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 91.91 sec | |
| Start 164: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 132/185 Test #47: coreneuron_modtests::test_psolve_py_gpu ............................ Passed 69.93 sec | |
| Start 84: testcorenrn_bbcore::compare_results | |
| 133/185 Test #84: testcorenrn_bbcore::compare_results ................................ Passed 0.06 sec | |
| Start 94: testcorenrn_conc::compare_results | |
| 134/185 Test #94: testcorenrn_conc::compare_results .................................. Passed 0.06 sec | |
| Start 104: testcorenrn_deriv::compare_results | |
| 135/185 Test #104: testcorenrn_deriv::compare_results ................................. Passed 0.05 sec | |
| Start 114: testcorenrn_gf::compare_results | |
| 136/185 Test #114: testcorenrn_gf::compare_results .................................... Passed 0.05 sec | |
| Start 124: testcorenrn_kin::compare_results | |
| 137/185 Test #124: testcorenrn_kin::compare_results ................................... Passed 0.05 sec | |
| Start 132: testcorenrn_patstim::compare_results | |
| 138/185 Test #132: testcorenrn_patstim::compare_results ............................... Passed 0.06 sec | |
| Start 142: testcorenrn_vecplay::compare_results | |
| 139/185 Test #142: testcorenrn_vecplay::compare_results ............................... Passed 0.05 sec | |
| Start 172: channel_benchmark_hippo::compare_results | |
| 140/185 Test #172: channel_benchmark_hippo::compare_results ........................... Passed 0.05 sec | |
| Start 178: channel_benchmark_sscx::compare_results | |
| 141/185 Test #178: channel_benchmark_sscx::compare_results ............................ Passed 0.06 sec | |
| 142/185 Test #48: coreneuron_modtests::test_ba_py_gpu ................................ Passed 72.97 sec | |
| Start 33: coreneuron_modtests::spikes_mpi_py_cpu | |
| 143/185 Test #44: coreneuron_modtests::test_netmove_py_gpu ........................... Passed 105.92 sec | |
| 144/185 Test #46: coreneuron_modtests::test_watchrange_py_gpu ........................ Passed 99.55 sec | |
| Start 34: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 145/185 Test #160: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 91.38 sec | |
| Start 35: coreneuron_modtests::inputpresyn_py_cpu | |
| 146/185 Test #159: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 102.07 sec | |
| Start 50: coreneuron_modtests::spikes_mpi_py_gpu | |
| 147/185 Test #57: external_nrntest ................................................... Passed 85.79 sec | |
| Start 162: testcorenrn_watch::compare_results | |
| 148/185 Test #162: testcorenrn_watch::compare_results ................................. Passed 0.05 sec | |
| 149/185 Test #49: coreneuron_modtests::test_natrans_py_gpu ........................... Passed 142.25 sec | |
| Start 51: coreneuron_modtests::spikes_mpi_file_mode_py_gpu | |
| 150/185 Test #163: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 147.51 sec | |
| Start 52: coreneuron_modtests::inputpresyn_py_gpu | |
| 151/185 Test #164: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 147.61 sec | |
| Start 165: testcorenrn_netstimdirect::compare_results | |
| 152/185 Test #165: testcorenrn_netstimdirect::compare_results ......................... Passed 0.06 sec | |
| 153/185 Test #34: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................... Passed 145.66 sec | |
| Start 147: testcorenrn_vecevent::coreneuron_gpu_offline::preparation | |
| 154/185 Test #50: coreneuron_modtests::spikes_mpi_py_gpu ............................. Passed 143.62 sec | |
| 155/185 Test #147: testcorenrn_vecevent::coreneuron_gpu_offline::preparation .......... Passed 2.66 sec | |
| Start 151: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 156/185 Test #151: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 2.09 sec | |
| Start 180: olfactory-bulb-3d::neuron::preparation | |
| 157/185 Test #180: olfactory-bulb-3d::neuron::preparation ............................. Passed 0.02 sec | |
| Start 182: olfactory-bulb-3d::coreneuron_gpu_online::preparation | |
| 158/185 Test #182: olfactory-bulb-3d::coreneuron_gpu_online::preparation .............. Passed 0.01 sec | |
| Start 184: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| 159/185 Test #184: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............. Passed 0.01 sec | |
| Start 58: reduced_dentate::neuron | |
| 160/185 Test #35: coreneuron_modtests::inputpresyn_py_cpu ............................ Passed 151.89 sec | |
| Start 59: reduced_dentate::coreneuron_cpu | |
| 161/185 Test #33: coreneuron_modtests::spikes_mpi_py_cpu ............................. Passed 164.39 sec | |
| 162/185 Test #58: reduced_dentate::neuron ............................................ Passed 20.65 sec | |
| Start 60: reduced_dentate::coreneuron_gpu | |
| 163/185 Test #52: coreneuron_modtests::inputpresyn_py_gpu ............................ Passed 106.70 sec | |
| Start 143: testcorenrn_vecevent::neuron | |
| 164/185 Test #51: coreneuron_modtests::spikes_mpi_file_mode_py_gpu ................... Passed 113.48 sec | |
| 165/185 Test #143: testcorenrn_vecevent::neuron ....................................... Passed 3.93 sec | |
| Start 68: external_ringtest::coreneuron_cpu_mpi_threads | |
| 166/185 Test #59: reduced_dentate::coreneuron_cpu .................................... Passed 107.24 sec | |
| Start 144: testcorenrn_vecevent::coreneuron_gpu_online | |
| 167/185 Test #60: reduced_dentate::coreneuron_gpu .................................... Passed 89.08 sec | |
| Start 145: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate | |
| 168/185 Test #68: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 69.38 sec | |
| Start 73: external_ringtest::coreneuron_gpu_mpi_threads | |
| 169/185 Test #144: testcorenrn_vecevent::coreneuron_gpu_online ........................ Passed 58.65 sec | |
| Start 146: testcorenrn_vecevent::coreneuron_gpu_offline | |
| 170/185 Test #28: coreneuron_modtests::test_pointer_py_cpu ........................... Passed 566.95 sec | |
| Start 61: reduced_dentate::compare_results | |
| 171/185 Test #61: reduced_dentate::compare_results ................................... Passed 0.18 sec | |
| 172/185 Test #145: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate ....... Passed 74.98 sec | |
| Start 148: testcorenrn_vecevent::coreneuron_cpu_online | |
| 173/185 Test #73: external_ringtest::coreneuron_gpu_mpi_threads ...................... Passed 67.45 sec | |
| Start 149: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| Start 74: external_ringtest::compare_results | |
| 174/185 Test #74: external_ringtest::compare_results ................................. Passed 0.07 sec | |
| 175/185 Test #146: testcorenrn_vecevent::coreneuron_gpu_offline ....................... Passed 52.69 sec | |
| Start 150: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 176/185 Test #148: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 63.28 sec | |
| Start 179: olfactory-bulb-3d::neuron | |
| 177/185 Test #149: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 58.09 sec | |
| Start 181: olfactory-bulb-3d::coreneuron_gpu_online | |
| 178/185 Test #150: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 61.68 sec | |
| Start 183: olfactory-bulb-3d::coreneuron_cpu_online | |
| Start 152: testcorenrn_vecevent::compare_results | |
| 179/185 Test #152: testcorenrn_vecevent::compare_results .............................. Passed 0.38 sec | |
| 180/185 Test #45: coreneuron_modtests::test_pointer_py_gpu ........................... Passed 538.33 sec | |
| 181/185 Test #179: olfactory-bulb-3d::neuron .......................................... Passed 135.73 sec | |
| 182/185 Test #181: olfactory-bulb-3d::coreneuron_gpu_online ........................... Passed 136.33 sec | |
| 183/185 Test #183: olfactory-bulb-3d::coreneuron_cpu_online ........................... Passed 135.78 sec | |
| Start 166: tqperf::coreneuron | |
| 184/185 Test #166: tqperf::coreneuron ................................................. Passed 32.73 sec | |
| Start 185: olfactory-bulb-3d::compare_results | |
| 185/185 Test #185: olfactory-bulb-3d::compare_results ................................. Passed 0.43 sec | |
| 100% tests passed, 0 tests failed out of 185 | |
| Total Test time (real) = 1216.03 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1655888824:step_script [0Ksection_start:1655888824:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=29223 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272591 responseStatus[0;m=201 Created token[0;m=WB4mcM5i | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=29287 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272591 responseStatus[0;m=201 Created token[0;m=WB4mcM5i | |
| section_end:1655888825:upload_artifacts_on_success [0Ksection_start:1655888825:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655888826:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655888059:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655888059:resolve_secrets [0Ksection_start:1655888059:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor227103749, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61703, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272599 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J272599_PROD_P112_CP3_C7 | |
| Job parameters: memory=76G, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563938 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=76G --job-name=GL_J272599_PROD_P112_CP3_C7 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --ntasks=16 --jobid=563938 --cpus-per-task=1 --mem=76G | |
| section_end:1655888060:prepare_executor [0Ksection_start:1655888060:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r4i6n4 via bbpv1.epfl.ch... | |
| section_end:1655888062:prepare_script [0Ksection_start:1655888062:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655888063:get_sources [0Ksection_start:1655888063:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron:nmodl:intel (272578)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=589 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272578 responseStatus[0;m=200 OK token[0;m=sBzNUJxs | |
| section_end:1655888064:download_artifacts [0Ksection_start:1655888064:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i6n30 | |
| Build name: Linux-icpc | |
| Create new tag: 20220622-0854 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272578/spack-build/spack-stage-neuron-develop-jhl3fvxgrrds5w2v5yyiqgn3n4pxwftn/spack-build-jhl3fvx | |
| Start 49: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 56: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 62: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| Start 68: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| Start 74: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| Start 80: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| Start 85: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| Start 91: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| Start 97: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 1/120 Test #56: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 2.15 sec | |
| Start 44: external_ringtest::neuron | |
| 2/120 Test #68: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 2.25 sec | |
| Start 52: testcorenrn_bbcore::neuron | |
| 3/120 Test #62: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 2.99 sec | |
| Start 53: testcorenrn_bbcore::coreneuron_cpu_online | |
| 4/120 Test #85: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 3.58 sec | |
| Start 103: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 5/120 Test #80: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 3.66 sec | |
| Start 54: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 6/120 Test #74: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 3.67 sec | |
| Start 45: external_ringtest::neuron_mpi | |
| 7/120 Test #91: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 3.70 sec | |
| Start 46: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
| 8/120 Test #97: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 3.96 sec | |
| Start 117: olfactory-bulb-3d::neuron::preparation | |
| 9/120 Test #117: olfactory-bulb-3d::neuron::preparation ............................. Passed 0.07 sec | |
| Start 119: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| 10/120 Test #52: testcorenrn_bbcore::neuron ......................................... Passed 1.83 sec | |
| Start 55: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 11/120 Test #119: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............. Passed 0.16 sec | |
| Start 41: reduced_dentate::neuron | |
| 12/120 Test #49: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 4.23 sec | |
| Start 47: external_ringtest::coreneuron_cpu_mpi | |
| 13/120 Test #44: external_ringtest::neuron .......................................... Passed 2.38 sec | |
| Start 58: testcorenrn_conc::neuron | |
| 14/120 Test #53: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 1.62 sec | |
| Start 59: testcorenrn_conc::coreneuron_cpu_online | |
| 15/120 Test #103: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 2.11 sec | |
| Start 48: external_ringtest::coreneuron_cpu_mpi_offline | |
| 16/120 Test #54: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 2.89 sec | |
| Start 60: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 17/120 Test #55: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 2.59 sec | |
| Start 61: testcorenrn_conc::coreneuron_cpu_offline | |
| 18/120 Test #58: testcorenrn_conc::neuron ........................................... Passed 2.97 sec | |
| Start 64: testcorenrn_deriv::neuron | |
| 19/120 Test #61: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 1.83 sec | |
| Start 65: testcorenrn_deriv::coreneuron_cpu_online | |
| 20/120 Test #59: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 3.95 sec | |
| Start 66: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 21/120 Test #64: testcorenrn_deriv::neuron .......................................... Passed 1.86 sec | |
| Start 67: testcorenrn_deriv::coreneuron_cpu_offline | |
| 22/120 Test #60: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 3.20 sec | |
| Start 76: testcorenrn_kin::neuron | |
| 23/120 Test #67: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 1.62 sec | |
| Start 77: testcorenrn_kin::coreneuron_cpu_online | |
| 24/120 Test #65: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 2.78 sec | |
| Start 78: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 25/120 Test #76: testcorenrn_kin::neuron ............................................ Passed 1.82 sec | |
| Start 79: testcorenrn_kin::coreneuron_cpu_offline | |
| 26/120 Test #66: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 3.10 sec | |
| Start 108: channel_benchmark_hippo::neuron | |
| 27/120 Test #45: external_ringtest::neuron_mpi ...................................... Passed 8.97 sec | |
| Start 70: testcorenrn_gf::neuron | |
| 28/120 Test #48: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 7.93 sec | |
| Start 71: testcorenrn_gf::coreneuron_cpu_online | |
| 29/120 Test #79: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 3.33 sec | |
| Start 109: channel_benchmark_hippo::coreneuron_cpu_online | |
| 30/120 Test #47: external_ringtest::coreneuron_cpu_mpi .............................. Passed 10.87 sec | |
| Start 72: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 31/120 Test #77: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 4.48 sec | |
| Start 110: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 32/120 Test #78: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 4.28 sec | |
| Start 112: channel_benchmark_sscx::neuron | |
| 33/120 Test #70: testcorenrn_gf::neuron ............................................. Passed 5.47 sec | |
| Start 73: testcorenrn_gf::coreneuron_cpu_offline | |
| 34/120 Test #46: external_ringtest::coreneuron_cpu_mpi_offline_saverestore .......... Passed 16.11 sec | |
| Start 82: testcorenrn_patstim::neuron | |
| 35/120 Test #71: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 9.40 sec | |
| Start 83: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
| 36/120 Test #82: testcorenrn_patstim::neuron ........................................ Passed 3.86 sec | |
| Start 84: testcorenrn_patstim::coreneuron_cpu_offline | |
| 37/120 Test #73: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 6.77 sec | |
| Start 87: testcorenrn_vecplay::neuron | |
| 38/120 Test #84: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 3.16 sec | |
| Start 88: testcorenrn_vecplay::coreneuron_cpu_online | |
| 39/120 Test #87: testcorenrn_vecplay::neuron ........................................ Passed 3.13 sec | |
| Start 89: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 40/120 Test #83: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............ Passed 9.04 sec | |
| Start 90: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 41/120 Test #88: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 6.02 sec | |
| Start 99: testcorenrn_watch::neuron | |
| 42/120 Test #72: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 19.39 sec | |
| Start 100: testcorenrn_watch::coreneuron_cpu_online | |
| 43/120 Test #90: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 2.77 sec | |
| Start 101: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 44/120 Test #99: testcorenrn_watch::neuron .......................................... Passed 3.29 sec | |
| Start 102: testcorenrn_watch::coreneuron_cpu_offline | |
| 45/120 Test #89: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 9.95 sec | |
| Start 105: testcorenrn_netstimdirect::direct_netstimdirect | |
| 46/120 Test #102: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 2.73 sec | |
| Start 106: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 47/120 Test #100: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 6.03 sec | |
| Start 113: channel_benchmark_sscx::coreneuron_cpu_online | |
| Start 114: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 48/120 Test #105: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 6.67 sec | |
| Start 1: testneuron | |
| Start 2: ringtest | |
| 49/120 Test #1: testneuron ......................................................... Passed 0.07 sec | |
| Start 3: connect_dend | |
| 50/120 Test #3: connect_dend ....................................................... Passed 0.15 sec | |
| Start 4: mpi_init::nrniv_mpiopt | |
| 51/120 Test #2: ringtest ........................................................... Passed 0.28 sec | |
| Start 5: mpi_init::nrniv_nrnmpi_init | |
| 52/120 Test #5: mpi_init::nrniv_nrnmpi_init ........................................ Passed 0.38 sec | |
| Start 6: mpi_init::python_nrnmpi_init | |
| 53/120 Test #4: mpi_init::nrniv_mpiopt ............................................. Passed 0.80 sec | |
| Start 7: mpi_init::python_mpienv | |
| 54/120 Test #6: mpi_init::python_nrnmpi_init ....................................... Passed 1.01 sec | |
| Start 8: mpi_init::nrniv_mpiexec_mpiopt | |
| 55/120 Test #101: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 12.18 sec | |
| Start 9: mpi_init::nrniv_mpiexec_nrnmpi_init | |
| Start 10: mpi_init::python_mpiexec_nrnmpi_init | |
| 56/120 Test #8: mpi_init::nrniv_mpiexec_mpiopt ..................................... Passed 1.69 sec | |
| Start 11: mpi_init::python_mpiexec_mpienv | |
| 57/120 Test #9: mpi_init::nrniv_mpiexec_nrnmpi_init ................................ Passed 1.51 sec | |
| Start 12: pynrn::basic_tests | |
| 58/120 Test #7: mpi_init::python_mpienv ............................................ Passed 3.05 sec | |
| Start 13: coverage_tests::cover_tests | |
| 59/120 Test #10: mpi_init::python_mpiexec_nrnmpi_init ............................... Passed 2.06 sec | |
| Start 14: parallel_tests | |
| 60/120 Test #106: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 10.44 sec | |
| Start 15: parallel_partrans | |
| Start 16: parallel_netpar | |
| 61/120 Test #11: mpi_init::python_mpiexec_mpienv .................................... Passed 4.08 sec | |
| Start 17: parallel_bas | |
| 62/120 Test #13: coverage_tests::cover_tests ........................................ Passed 7.15 sec | |
| Start 18: coreneuron_modtests::version_macros | |
| 63/120 Test #16: parallel_netpar .................................................... Passed 6.75 sec | |
| Start 19: coreneuron_modtests::fornetcon_py_cpu | |
| 64/120 Test #15: parallel_partrans .................................................. Passed 6.90 sec | |
| Start 20: coreneuron_modtests::direct_py_cpu | |
| 65/120 Test #12: pynrn::basic_tests ................................................. Passed 10.47 sec | |
| Start 21: coreneuron_modtests::direct_hoc_cpu | |
| 66/120 Test #14: parallel_tests ..................................................... Passed 10.41 sec | |
| Start 22: coreneuron_modtests::spikes_py_cpu | |
| 67/120 Test #21: coreneuron_modtests::direct_hoc_cpu ................................ Passed 12.86 sec | |
| Start 23: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 68/120 Test #17: parallel_bas ....................................................... Passed 24.91 sec | |
| Start 24: coreneuron_modtests::fast_imem_py_cpu | |
| 69/120 Test #18: coreneuron_modtests::version_macros ................................ Passed 71.55 sec | |
| Start 25: coreneuron_modtests::datareturn_py_cpu | |
| 70/120 Test #19: coreneuron_modtests::fornetcon_py_cpu .............................. Passed 72.05 sec | |
| Start 26: coreneuron_modtests::test_units_py_cpu | |
| 71/120 Test #20: coreneuron_modtests::direct_py_cpu ................................. Passed 74.35 sec | |
| Start 27: coreneuron_modtests::test_netmove_py_cpu | |
| 72/120 Test #22: coreneuron_modtests::spikes_py_cpu ................................. Passed 73.92 sec | |
| Start 28: coreneuron_modtests::test_pointer_py_cpu | |
| 73/120 Test #41: reduced_dentate::neuron ............................................ Passed 139.27 sec | |
| Start 42: reduced_dentate::coreneuron_cpu | |
| 74/120 Test #23: coreneuron_modtests::spikes_file_mode_py_cpu ....................... Passed 75.48 sec | |
| Start 29: coreneuron_modtests::test_watchrange_py_cpu | |
| 75/120 Test #24: coreneuron_modtests::fast_imem_py_cpu .............................. Passed 78.77 sec | |
| Start 30: coreneuron_modtests::test_psolve_py_cpu | |
| 76/120 Test #112: channel_benchmark_sscx::neuron ..................................... Passed 155.18 sec | |
| Start 31: coreneuron_modtests::test_ba_py_cpu | |
| 77/120 Test #108: channel_benchmark_hippo::neuron .................................... Passed 161.84 sec | |
| Start 32: coreneuron_modtests::test_natrans_py_cpu | |
| 78/120 Test #109: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 160.33 sec | |
| Start 36: modlunit_unitstest | |
| 79/120 Test #36: modlunit_unitstest ................................................. Passed 0.01 sec | |
| Start 37: modlunit_hh | |
| 80/120 Test #37: modlunit_hh ........................................................ Passed 0.01 sec | |
| Start 38: modlunit_stim | |
| 81/120 Test #38: modlunit_stim ...................................................... Passed 0.01 sec | |
| Start 39: modlunit_pattern | |
| 82/120 Test #39: modlunit_pattern ................................................... Passed 0.01 sec | |
| Start 40: external_nrntest | |
| 83/120 Test #110: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 160.72 sec | |
| Start 57: testcorenrn_bbcore::compare_results | |
| 84/120 Test #57: testcorenrn_bbcore::compare_results ................................ Passed 0.98 sec | |
| Start 63: testcorenrn_conc::compare_results | |
| 85/120 Test #63: testcorenrn_conc::compare_results .................................. Passed 0.64 sec | |
| Start 69: testcorenrn_deriv::compare_results | |
| 86/120 Test #69: testcorenrn_deriv::compare_results ................................. Passed 0.63 sec | |
| Start 75: testcorenrn_gf::compare_results | |
| 87/120 Test #75: testcorenrn_gf::compare_results .................................... Passed 0.81 sec | |
| Start 81: testcorenrn_kin::compare_results | |
| 88/120 Test #81: testcorenrn_kin::compare_results ................................... Passed 0.30 sec | |
| Start 86: testcorenrn_patstim::compare_results | |
| 89/120 Test #86: testcorenrn_patstim::compare_results ............................... Passed 0.53 sec | |
| Start 92: testcorenrn_vecplay::compare_results | |
| 90/120 Test #92: testcorenrn_vecplay::compare_results ............................... Passed 0.36 sec | |
| Start 104: testcorenrn_watch::compare_results | |
| 91/120 Test #104: testcorenrn_watch::compare_results ................................. Passed 0.11 sec | |
| Start 107: testcorenrn_netstimdirect::compare_results | |
| 92/120 Test #107: testcorenrn_netstimdirect::compare_results ......................... Passed 0.94 sec | |
| Start 111: channel_benchmark_hippo::compare_results | |
| 93/120 Test #111: channel_benchmark_hippo::compare_results ........................... Passed 0.49 sec | |
| 94/120 Test #113: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 145.58 sec | |
| Start 33: coreneuron_modtests::spikes_mpi_py_cpu | |
| 95/120 Test #114: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 146.13 sec | |
| Start 115: channel_benchmark_sscx::compare_results | |
| 96/120 Test #115: channel_benchmark_sscx::compare_results ............................ Passed 0.12 sec | |
| 97/120 Test #26: coreneuron_modtests::test_units_py_cpu ............................. Passed 60.78 sec | |
| Start 34: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 98/120 Test #33: coreneuron_modtests::spikes_mpi_py_cpu ............................. Passed 3.01 sec | |
| Start 35: coreneuron_modtests::inputpresyn_py_cpu | |
| 99/120 Test #34: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................... Passed 3.14 sec | |
| 100/120 Test #27: coreneuron_modtests::test_netmove_py_cpu ........................... Passed 62.07 sec | |
| 101/120 Test #25: coreneuron_modtests::datareturn_py_cpu ............................. Passed 65.42 sec | |
| Start 93: testcorenrn_vecevent::neuron | |
| 102/120 Test #35: coreneuron_modtests::inputpresyn_py_cpu ............................ Passed 4.17 sec | |
| 103/120 Test #29: coreneuron_modtests::test_watchrange_py_cpu ........................ Passed 46.65 sec | |
| 104/120 Test #30: coreneuron_modtests::test_psolve_py_cpu ............................ Passed 39.09 sec | |
| Start 94: testcorenrn_vecevent::coreneuron_cpu_online | |
| 105/120 Test #28: coreneuron_modtests::test_pointer_py_cpu ........................... Passed 61.56 sec | |
| 106/120 Test #31: coreneuron_modtests::test_ba_py_cpu ................................ Passed 24.61 sec | |
| 107/120 Test #32: coreneuron_modtests::test_natrans_py_cpu ........................... Passed 22.03 sec | |
| 108/120 Test #93: testcorenrn_vecevent::neuron ....................................... Passed 2.92 sec | |
| Start 50: external_ringtest::coreneuron_cpu_mpi_threads | |
| 109/120 Test #94: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 5.40 sec | |
| Start 95: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 110/120 Test #50: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 5.41 sec | |
| Start 96: testcorenrn_vecevent::coreneuron_cpu_offline | |
| Start 51: external_ringtest::compare_results | |
| 111/120 Test #51: external_ringtest::compare_results ................................. Passed 0.45 sec | |
| 112/120 Test #96: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 4.74 sec | |
| Start 116: olfactory-bulb-3d::neuron | |
| 113/120 Test #95: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 6.66 sec | |
| Start 118: olfactory-bulb-3d::coreneuron_cpu_online | |
| Start 98: testcorenrn_vecevent::compare_results | |
| 114/120 Test #98: testcorenrn_vecevent::compare_results .............................. Passed 0.64 sec | |
| 115/120 Test #42: reduced_dentate::coreneuron_cpu .................................... Passed 68.78 sec | |
| Start 43: reduced_dentate::compare_results | |
| 116/120 Test #43: reduced_dentate::compare_results ................................... Passed 0.07 sec | |
| 117/120 Test #40: external_nrntest ................................................... Passed 168.95 sec | |
| 118/120 Test #118: olfactory-bulb-3d::coreneuron_cpu_online ........................... Passed 143.54 sec | |
| 119/120 Test #116: olfactory-bulb-3d::neuron .......................................... Passed 146.95 sec | |
| Start 120: olfactory-bulb-3d::compare_results | |
| 120/120 Test #120: olfactory-bulb-3d::compare_results ................................. Passed 0.17 sec | |
| 100% tests passed, 0 tests failed out of 120 | |
| Total Test time (real) = 353.10 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1655888445:step_script [0Ksection_start:1655888445:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=8988 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272599 responseStatus[0;m=201 Created token[0;m=x-s5ddUB | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=9040 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272599 responseStatus[0;m=201 Created token[0;m=x-s5ddUB | |
| section_end:1655888446:upload_artifacts_on_success [0Ksection_start:1655888446:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655888447:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655887903:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655887903:resolve_secrets [0Ksection_start:1655887903:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor117043257, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61703, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272595 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J272595_PROD_P112_CP7_C5 | |
| Job parameters: memory=76G, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 563901 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=76G --job-name=GL_J272595_PROD_P112_CP7_C5 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --ntasks=16 --jobid=563901 --cpus-per-task=1 --mem=76G | |
| section_end:1655887904:prepare_executor [0Ksection_start:1655887904:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch... | |
| section_end:1655887911:prepare_script [0Ksection_start:1655887911:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655887912:get_sources [0Ksection_start:1655887912:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron:nmodl:nvhpc:acc (272573)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=81851 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272573 responseStatus[0;m=200 OK token[0;m=R7pBG9od | |
| section_end:1655887913:download_artifacts [0Ksection_start:1655887913:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i7n35 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220622-0852 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272573/spack-build/spack-stage-neuron-develop-f6nikkkl3jokiiz56xke2nvdgfsrjose/spack-build-f6nikkk | |
| Start 67: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 72: external_ringtest::coreneuron_gpu_mpi_offline::preparation | |
| Start 79: testcorenrn_bbcore::coreneuron_gpu_offline::preparation | |
| Start 83: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 89: testcorenrn_conc::coreneuron_gpu_offline::preparation | |
| Start 93: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| Start 99: testcorenrn_deriv::coreneuron_gpu_offline::preparation | |
| Start 103: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| Start 109: testcorenrn_gf::coreneuron_gpu_offline::preparation | |
| Start 113: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| Start 119: testcorenrn_kin::coreneuron_gpu_offline::preparation | |
| Start 123: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| 1/184 Test #83: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 2.51 sec | |
| Start 128: testcorenrn_patstim::coreneuron_gpu_offline::preparation | |
| 2/184 Test #93: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 3.08 sec | |
| Start 62: external_ringtest::neuron | |
| 3/184 Test #79: testcorenrn_bbcore::coreneuron_gpu_offline::preparation ............ Passed 3.39 sec | |
| Start 75: testcorenrn_bbcore::neuron | |
| 4/184 Test #89: testcorenrn_conc::coreneuron_gpu_offline::preparation .............. Passed 3.99 sec | |
| Start 76: testcorenrn_bbcore::coreneuron_gpu_online | |
| 5/184 Test #123: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 6.33 sec | |
| Start 77: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate | |
| 6/184 Test #103: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 6.53 sec | |
| Start 78: testcorenrn_bbcore::coreneuron_gpu_offline | |
| 7/184 Test #99: testcorenrn_deriv::coreneuron_gpu_offline::preparation ............. Passed 6.65 sec | |
| Start 80: testcorenrn_bbcore::coreneuron_cpu_online | |
| 8/184 Test #119: testcorenrn_kin::coreneuron_gpu_offline::preparation ............... Passed 6.80 sec | |
| Start 81: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 9/184 Test #75: testcorenrn_bbcore::neuron ......................................... Passed 3.94 sec | |
| Start 82: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 10/184 Test #113: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 7.34 sec | |
| Start 131: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| 11/184 Test #128: testcorenrn_patstim::coreneuron_gpu_offline::preparation ........... Passed 5.02 sec | |
| Start 85: testcorenrn_conc::neuron | |
| 12/184 Test #109: testcorenrn_gf::coreneuron_gpu_offline::preparation ................ Passed 7.68 sec | |
| Start 137: testcorenrn_vecplay::coreneuron_gpu_offline::preparation | |
| 13/184 Test #62: external_ringtest::neuron .......................................... Passed 4.52 sec | |
| Start 86: testcorenrn_conc::coreneuron_gpu_online | |
| 14/184 Test #85: testcorenrn_conc::neuron ........................................... Passed 1.89 sec | |
| Start 87: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate | |
| 15/184 Test #137: testcorenrn_vecplay::coreneuron_gpu_offline::preparation ........... Passed 2.17 sec | |
| Start 141: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 16/184 Test #131: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 2.59 sec | |
| Start 157: testcorenrn_watch::coreneuron_gpu_offline::preparation | |
| 17/184 Test #141: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 2.95 sec | |
| Start 161: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 18/184 Test #157: testcorenrn_watch::coreneuron_gpu_offline::preparation ............. Passed 2.92 sec | |
| Start 63: external_ringtest::neuron_mpi | |
| 19/184 Test #161: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 2.00 sec | |
| Start 64: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
| 20/184 Test #63: external_ringtest::neuron_mpi ...................................... Passed 2.72 sec | |
| Start 65: external_ringtest::coreneuron_cpu_mpi | |
| 21/184 Test #82: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 79.19 sec | |
| Start 88: testcorenrn_conc::coreneuron_gpu_offline | |
| 22/184 Test #67: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 87.47 sec | |
| Start 66: external_ringtest::coreneuron_cpu_mpi_offline | |
| 23/184 Test #81: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 80.77 sec | |
| Start 90: testcorenrn_conc::coreneuron_cpu_online | |
| 24/184 Test #72: external_ringtest::coreneuron_gpu_mpi_offline::preparation ......... Passed 87.96 sec | |
| Start 69: external_ringtest::coreneuron_gpu_mpi_offline_saverestore | |
| 25/184 Test #80: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 81.45 sec | |
| Start 91: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 26/184 Test #78: testcorenrn_bbcore::coreneuron_gpu_offline ......................... Passed 83.51 sec | |
| Start 92: testcorenrn_conc::coreneuron_cpu_offline | |
| 27/184 Test #76: testcorenrn_bbcore::coreneuron_gpu_online .......................... Passed 86.38 sec | |
| Start 95: testcorenrn_deriv::neuron | |
| 28/184 Test #86: testcorenrn_conc::coreneuron_gpu_online ............................ Passed 82.89 sec | |
| Start 96: testcorenrn_deriv::coreneuron_gpu_online | |
| 29/184 Test #65: external_ringtest::coreneuron_cpu_mpi .............................. Passed 76.01 sec | |
| Start 70: external_ringtest::coreneuron_gpu_mpi | |
| 30/184 Test #95: testcorenrn_deriv::neuron .......................................... Passed 1.40 sec | |
| Start 97: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate | |
| 31/184 Test #77: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate ......... Passed 114.06 sec | |
| Start 98: testcorenrn_deriv::coreneuron_gpu_offline | |
| 32/184 Test #87: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate ........... Passed 126.98 sec | |
| Start 100: testcorenrn_deriv::coreneuron_cpu_online | |
| 33/184 Test #92: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 92.28 sec | |
| Start 101: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 34/184 Test #90: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 95.58 sec | |
| Start 102: testcorenrn_deriv::coreneuron_cpu_offline | |
| 35/184 Test #66: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 96.51 sec | |
| Start 71: external_ringtest::coreneuron_gpu_mpi_offline | |
| 36/184 Test #91: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 96.17 sec | |
| Start 115: testcorenrn_kin::neuron | |
| 37/184 Test #115: testcorenrn_kin::neuron ............................................ Passed 1.46 sec | |
| Start 116: testcorenrn_kin::coreneuron_gpu_online | |
| 38/184 Test #88: testcorenrn_conc::coreneuron_gpu_offline ........................... Passed 100.57 sec | |
| Start 117: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate | |
| 39/184 Test #98: testcorenrn_deriv::coreneuron_gpu_offline .......................... Passed 67.82 sec | |
| Start 118: testcorenrn_kin::coreneuron_gpu_offline | |
| 40/184 Test #96: testcorenrn_deriv::coreneuron_gpu_online ........................... Passed 98.41 sec | |
| Start 120: testcorenrn_kin::coreneuron_cpu_online | |
| 41/184 Test #70: external_ringtest::coreneuron_gpu_mpi .............................. Passed 100.17 sec | |
| Start 105: testcorenrn_gf::neuron | |
| 42/184 Test #105: testcorenrn_gf::neuron ............................................. Passed 1.83 sec | |
| Start 106: testcorenrn_gf::coreneuron_gpu_online | |
| 43/184 Test #100: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 63.27 sec | |
| Start 121: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 44/184 Test #97: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate .......... Passed 136.21 sec | |
| Start 122: testcorenrn_kin::coreneuron_cpu_offline | |
| 45/184 Test #102: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 82.59 sec | |
| Start 126: testcorenrn_patstim::coreneuron_gpu_offline_saverestore | |
| 46/184 Test #101: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 86.56 sec | |
| Start 127: testcorenrn_patstim::coreneuron_gpu_offline | |
| 47/184 Test #120: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 81.12 sec | |
| Start 166: channel_benchmark_hippo::neuron | |
| 48/184 Test #118: testcorenrn_kin::coreneuron_gpu_offline ............................ Passed 83.76 sec | |
| Start 167: channel_benchmark_hippo::coreneuron_gpu_online | |
| 49/184 Test #116: testcorenrn_kin::coreneuron_gpu_online ............................. Passed 86.54 sec | |
| Start 168: channel_benchmark_hippo::coreneuron_gpu_filemode | |
| 50/184 Test #106: testcorenrn_gf::coreneuron_gpu_online .............................. Passed 81.00 sec | |
| Start 107: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate | |
| 51/184 Test #71: external_ringtest::coreneuron_gpu_mpi_offline ...................... Passed 101.32 sec | |
| Start 108: testcorenrn_gf::coreneuron_gpu_offline | |
| 52/184 Test #121: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 88.65 sec | |
| Start 169: channel_benchmark_hippo::coreneuron_cpu_online | |
| 53/184 Test #166: channel_benchmark_hippo::neuron .................................... Passed 77.96 sec | |
| Start 170: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 54/184 Test #122: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 143.27 sec | |
| Start 172: channel_benchmark_sscx::neuron | |
| 55/184 Test #117: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate ............ Passed 184.30 sec | |
| Start 173: channel_benchmark_sscx::coreneuron_gpu_online | |
| 56/184 Test #172: channel_benchmark_sscx::neuron ..................................... Passed 44.35 sec | |
| Start 174: channel_benchmark_sscx::coreneuron_gpu_filemode | |
| 57/184 Test #64: external_ringtest::coreneuron_cpu_mpi_offline_saverestore .......... Passed 419.61 sec | |
| Start 110: testcorenrn_gf::coreneuron_cpu_online | |
| 58/184 Test #127: testcorenrn_patstim::coreneuron_gpu_offline ........................ Passed 176.18 sec | |
| Start 175: channel_benchmark_sscx::coreneuron_cpu_online | |
| 59/184 Test #108: testcorenrn_gf::coreneuron_gpu_offline ............................. Passed 164.73 sec | |
| Start 111: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 60/184 Test #169: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 194.25 sec | |
| Start 176: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 61/184 Test #170: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 134.91 sec | |
| Start 1: testneuron | |
| 62/184 Test #1: testneuron ......................................................... Passed 0.18 sec | |
| Start 2: ringtest | |
| 63/184 Test #107: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate ............. Passed 208.89 sec | |
| Start 112: testcorenrn_gf::coreneuron_cpu_offline | |
| 64/184 Test #167: channel_benchmark_hippo::coreneuron_gpu_online ..................... Passed 211.87 sec | |
| Start 3: connect_dend | |
| 65/184 Test #168: channel_benchmark_hippo::coreneuron_gpu_filemode ................... Passed 211.64 sec | |
| Start 4: mpi_init::nrniv_mpiopt | |
| 66/184 Test #4: mpi_init::nrniv_mpiopt ............................................. Passed 1.19 sec | |
| Start 5: mpi_init::nrniv_nrnmpi_init | |
| 67/184 Test #2: ringtest ........................................................... Passed 2.00 sec | |
| Start 6: mpi_init::python_nrnmpi_init | |
| 68/184 Test #3: connect_dend ....................................................... Passed 2.06 sec | |
| Start 7: mpi_init::python_mpienv | |
| 69/184 Test #5: mpi_init::nrniv_nrnmpi_init ........................................ Passed 1.07 sec | |
| Start 8: mpi_init::nrniv_mpiexec_mpiopt | |
| 70/184 Test #6: mpi_init::python_nrnmpi_init ....................................... Passed 2.69 sec | |
| Start 9: mpi_init::nrniv_mpiexec_nrnmpi_init | |
| 71/184 Test #8: mpi_init::nrniv_mpiexec_mpiopt ..................................... Passed 2.36 sec | |
| Start 10: mpi_init::python_mpiexec_nrnmpi_init | |
| 72/184 Test #7: mpi_init::python_mpienv ............................................ Passed 3.10 sec | |
| Start 11: mpi_init::python_mpiexec_mpienv | |
| 73/184 Test #9: mpi_init::nrniv_mpiexec_nrnmpi_init ................................ Passed 1.31 sec | |
| Start 12: pynrn::basic_tests | |
| 74/184 Test #10: mpi_init::python_mpiexec_nrnmpi_init ............................... Passed 1.74 sec | |
| Start 13: coverage_tests::cover_tests | |
| 75/184 Test #11: mpi_init::python_mpiexec_mpienv .................................... Passed 2.92 sec | |
| Start 14: parallel_tests | |
| 76/184 Test #13: coverage_tests::cover_tests ........................................ Passed 2.34 sec | |
| Start 15: parallel_partrans | |
| 77/184 Test #12: pynrn::basic_tests ................................................. Passed 5.48 sec | |
| Start 16: parallel_netpar | |
| 78/184 Test #15: parallel_partrans .................................................. Passed 3.97 sec | |
| Start 17: parallel_bas | |
| 79/184 Test #14: parallel_tests ..................................................... Passed 5.91 sec | |
| Start 18: coreneuron_modtests::version_macros | |
| 80/184 Test #16: parallel_netpar .................................................... Passed 3.16 sec | |
| Start 19: coreneuron_modtests::fornetcon_py_cpu | |
| 81/184 Test #17: parallel_bas ....................................................... Passed 8.68 sec | |
| Start 20: coreneuron_modtests::direct_py_cpu | |
| 82/184 Test #173: channel_benchmark_sscx::coreneuron_gpu_online ...................... Passed 144.80 sec | |
| Start 21: coreneuron_modtests::direct_hoc_cpu | |
| 83/184 Test #110: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 86.85 sec | |
| Start 125: testcorenrn_patstim::neuron | |
| 84/184 Test #126: testcorenrn_patstim::coreneuron_gpu_offline_saverestore ............ Passed 255.92 sec | |
| Start 22: coreneuron_modtests::spikes_py_cpu | |
| 85/184 Test #174: channel_benchmark_sscx::coreneuron_gpu_filemode .................... Passed 106.62 sec | |
| Start 23: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 86/184 Test #125: testcorenrn_patstim::neuron ........................................ Passed 2.93 sec | |
| Start 129: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
| 87/184 Test #69: external_ringtest::coreneuron_gpu_mpi_offline_saverestore .......... Passed 437.03 sec | |
| Start 130: testcorenrn_patstim::coreneuron_cpu_offline | |
| 88/184 Test #111: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 75.22 sec | |
| Start 133: testcorenrn_vecplay::neuron | |
| 89/184 Test #175: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 81.54 sec | |
| Start 24: coreneuron_modtests::fast_imem_py_cpu | |
| 90/184 Test #133: testcorenrn_vecplay::neuron ........................................ Passed 2.54 sec | |
| Start 134: testcorenrn_vecplay::coreneuron_gpu_online | |
| 91/184 Test #24: coreneuron_modtests::fast_imem_py_cpu .............................. Passed 12.79 sec | |
| Start 25: coreneuron_modtests::datareturn_py_cpu | |
| 92/184 Test #112: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 68.79 sec | |
| Start 135: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate | |
| 93/184 Test #18: coreneuron_modtests::version_macros ................................ Passed 72.91 sec | |
| Start 26: coreneuron_modtests::test_units_py_cpu | |
| 94/184 Test #19: coreneuron_modtests::fornetcon_py_cpu .............................. Passed 86.76 sec | |
| Start 27: coreneuron_modtests::test_netmove_py_cpu | |
| 95/184 Test #21: coreneuron_modtests::direct_hoc_cpu ................................ Passed 68.98 sec | |
| Start 28: coreneuron_modtests::test_pointer_py_cpu | |
| 96/184 Test #20: coreneuron_modtests::direct_py_cpu ................................. Passed 79.98 sec | |
| Start 29: coreneuron_modtests::test_watchrange_py_cpu | |
| 97/184 Test #23: coreneuron_modtests::spikes_file_mode_py_cpu ....................... Passed 63.05 sec | |
| Start 30: coreneuron_modtests::test_psolve_py_cpu | |
| 98/184 Test #22: coreneuron_modtests::spikes_py_cpu ................................. Passed 63.64 sec | |
| Start 31: coreneuron_modtests::test_ba_py_cpu | |
| 99/184 Test #130: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 61.54 sec | |
| Start 136: testcorenrn_vecplay::coreneuron_gpu_offline | |
| 100/184 Test #176: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 104.05 sec | |
| Start 32: coreneuron_modtests::test_natrans_py_cpu | |
| 101/184 Test #134: testcorenrn_vecplay::coreneuron_gpu_online ......................... Passed 59.22 sec | |
| Start 138: testcorenrn_vecplay::coreneuron_cpu_online | |
| 102/184 Test #25: coreneuron_modtests::datareturn_py_cpu ............................. Passed 50.83 sec | |
| Start 36: coreneuron_modtests::fornetcon_py_gpu | |
| 103/184 Test #26: coreneuron_modtests::test_units_py_cpu ............................. Passed 45.88 sec | |
| Start 37: coreneuron_modtests::direct_py_gpu | |
| 104/184 Test #135: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate ........ Passed 69.87 sec | |
| Start 139: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 105/184 Test #27: coreneuron_modtests::test_netmove_py_cpu ........................... Passed 41.65 sec | |
| Start 38: coreneuron_modtests::direct_hoc_gpu | |
| 106/184 Test #30: coreneuron_modtests::test_psolve_py_cpu ............................ Passed 41.59 sec | |
| Start 39: coreneuron_modtests::spikes_py_gpu | |
| 107/184 Test #32: coreneuron_modtests::test_natrans_py_cpu ........................... Passed 40.28 sec | |
| Start 40: coreneuron_modtests::spikes_file_mode_py_gpu | |
| 108/184 Test #29: coreneuron_modtests::test_watchrange_py_cpu ........................ Passed 41.80 sec | |
| Start 41: coreneuron_modtests::fast_imem_py_gpu | |
| 109/184 Test #31: coreneuron_modtests::test_ba_py_cpu ................................ Passed 43.21 sec | |
| Start 42: coreneuron_modtests::datareturn_py_gpu | |
| 110/184 Test #138: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 42.50 sec | |
| Start 140: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 111/184 Test #36: coreneuron_modtests::fornetcon_py_gpu .............................. Passed 40.88 sec | |
| Start 43: coreneuron_modtests::test_units_py_gpu | |
| 112/184 Test #41: coreneuron_modtests::fast_imem_py_gpu .............................. Passed 4.80 sec | |
| Start 44: coreneuron_modtests::test_netmove_py_gpu | |
| 113/184 Test #136: testcorenrn_vecplay::coreneuron_gpu_offline ........................ Passed 46.59 sec | |
| Start 153: testcorenrn_watch::neuron | |
| 114/184 Test #153: testcorenrn_watch::neuron .......................................... Passed 1.56 sec | |
| Start 154: testcorenrn_watch::coreneuron_gpu_online | |
| 115/184 Test #129: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............ Passed 120.70 sec | |
| Start 155: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate | |
| 116/184 Test #37: coreneuron_modtests::direct_py_gpu ................................. Passed 54.76 sec | |
| Start 45: coreneuron_modtests::test_pointer_py_gpu | |
| 117/184 Test #140: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 51.78 sec | |
| Start 156: testcorenrn_watch::coreneuron_gpu_offline | |
| 118/184 Test #139: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 60.03 sec | |
| Start 158: testcorenrn_watch::coreneuron_cpu_online | |
| 119/184 Test #38: coreneuron_modtests::direct_hoc_gpu ................................ Passed 57.19 sec | |
| Start 46: coreneuron_modtests::test_watchrange_py_gpu | |
| 120/184 Test #43: coreneuron_modtests::test_units_py_gpu ............................. Passed 52.53 sec | |
| Start 47: coreneuron_modtests::test_psolve_py_gpu | |
| 121/184 Test #39: coreneuron_modtests::spikes_py_gpu ................................. Passed 57.27 sec | |
| Start 48: coreneuron_modtests::test_ba_py_gpu | |
| 122/184 Test #44: coreneuron_modtests::test_netmove_py_gpu ........................... Passed 52.30 sec | |
| Start 49: coreneuron_modtests::test_natrans_py_gpu | |
| 123/184 Test #40: coreneuron_modtests::spikes_file_mode_py_gpu ....................... Passed 57.40 sec | |
| Start 53: modlunit_unitstest | |
| 124/184 Test #42: coreneuron_modtests::datareturn_py_gpu ............................. Passed 55.84 sec | |
| Start 54: modlunit_hh | |
| 125/184 Test #53: modlunit_unitstest ................................................. Passed 0.66 sec | |
| Start 55: modlunit_stim | |
| 126/184 Test #54: modlunit_hh ........................................................ Passed 1.60 sec | |
| Start 56: modlunit_pattern | |
| 127/184 Test #154: testcorenrn_watch::coreneuron_gpu_online ........................... Passed 51.48 sec | |
| Start 159: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 128/184 Test #55: modlunit_stim ...................................................... Passed 1.52 sec | |
| Start 57: external_nrntest | |
| 129/184 Test #56: modlunit_pattern ................................................... Passed 0.92 sec | |
| Start 84: testcorenrn_bbcore::compare_results | |
| 130/184 Test #84: testcorenrn_bbcore::compare_results ................................ Passed 0.76 sec | |
| Start 94: testcorenrn_conc::compare_results | |
| 131/184 Test #94: testcorenrn_conc::compare_results .................................. Passed 4.93 sec | |
| Start 104: testcorenrn_deriv::compare_results | |
| 132/184 Test #104: testcorenrn_deriv::compare_results ................................. Passed 0.72 sec | |
| Start 114: testcorenrn_gf::compare_results | |
| 133/184 Test #114: testcorenrn_gf::compare_results .................................... Passed 0.11 sec | |
| Start 124: testcorenrn_kin::compare_results | |
| 134/184 Test #124: testcorenrn_kin::compare_results ................................... Passed 0.12 sec | |
| Start 132: testcorenrn_patstim::compare_results | |
| 135/184 Test #132: testcorenrn_patstim::compare_results ............................... Passed 0.10 sec | |
| Start 142: testcorenrn_vecplay::compare_results | |
| 136/184 Test #142: testcorenrn_vecplay::compare_results ............................... Passed 0.08 sec | |
| Start 171: channel_benchmark_hippo::compare_results | |
| 137/184 Test #171: channel_benchmark_hippo::compare_results ........................... Passed 0.11 sec | |
| Start 177: channel_benchmark_sscx::compare_results | |
| 138/184 Test #177: channel_benchmark_sscx::compare_results ............................ Passed 0.91 sec | |
| 139/184 Test #155: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate .......... Passed 77.51 sec | |
| Start 160: testcorenrn_watch::coreneuron_cpu_offline | |
| 140/184 Test #156: testcorenrn_watch::coreneuron_gpu_offline .......................... Passed 49.54 sec | |
| Start 163: testcorenrn_netstimdirect::direct_netstimdirect | |
| 141/184 Test #49: coreneuron_modtests::test_natrans_py_gpu ........................... Passed 49.46 sec | |
| Start 164: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 142/184 Test #47: coreneuron_modtests::test_psolve_py_gpu ............................ Passed 62.83 sec | |
| 143/184 Test #48: coreneuron_modtests::test_ba_py_gpu ................................ Passed 72.21 sec | |
| Start 33: coreneuron_modtests::spikes_mpi_py_cpu | |
| 144/184 Test #46: coreneuron_modtests::test_watchrange_py_gpu ........................ Passed 72.79 sec | |
| 145/184 Test #158: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 75.32 sec | |
| Start 34: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 146/184 Test #159: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 71.83 sec | |
| Start 35: coreneuron_modtests::inputpresyn_py_cpu | |
| 147/184 Test #160: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 47.16 sec | |
| Start 50: coreneuron_modtests::spikes_mpi_py_gpu | |
| Start 162: testcorenrn_watch::compare_results | |
| 148/184 Test #162: testcorenrn_watch::compare_results ................................. Passed 1.22 sec | |
| 149/184 Test #163: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 44.84 sec | |
| Start 51: coreneuron_modtests::spikes_mpi_file_mode_py_gpu | |
| 150/184 Test #164: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 42.17 sec | |
| Start 52: coreneuron_modtests::inputpresyn_py_gpu | |
| Start 165: testcorenrn_netstimdirect::compare_results | |
| 151/184 Test #165: testcorenrn_netstimdirect::compare_results ......................... Passed 0.47 sec | |
| 152/184 Test #33: coreneuron_modtests::spikes_mpi_py_cpu ............................. Passed 45.49 sec | |
| 153/184 Test #35: coreneuron_modtests::inputpresyn_py_cpu ............................ Passed 46.93 sec | |
| Start 147: testcorenrn_vecevent::coreneuron_gpu_offline::preparation | |
| 154/184 Test #34: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................... Passed 47.57 sec | |
| 155/184 Test #147: testcorenrn_vecevent::coreneuron_gpu_offline::preparation .......... Passed 1.79 sec | |
| Start 151: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 156/184 Test #151: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 1.78 sec | |
| Start 179: olfactory-bulb-3d::neuron::preparation | |
| 157/184 Test #179: olfactory-bulb-3d::neuron::preparation ............................. Passed 0.02 sec | |
| Start 181: olfactory-bulb-3d::coreneuron_gpu_online::preparation | |
| 158/184 Test #181: olfactory-bulb-3d::coreneuron_gpu_online::preparation .............. Passed 0.01 sec | |
| Start 183: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| 159/184 Test #183: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............. Passed 0.01 sec | |
| Start 58: reduced_dentate::neuron | |
| 160/184 Test #58: reduced_dentate::neuron ............................................ Passed 6.61 sec | |
| Start 59: reduced_dentate::coreneuron_cpu | |
| 161/184 Test #52: coreneuron_modtests::inputpresyn_py_gpu ............................ Passed 41.25 sec | |
| Start 60: reduced_dentate::coreneuron_gpu | |
| 162/184 Test #51: coreneuron_modtests::spikes_mpi_file_mode_py_gpu ................... Passed 41.55 sec | |
| 163/184 Test #50: coreneuron_modtests::spikes_mpi_py_gpu ............................. Passed 47.40 sec | |
| Start 143: testcorenrn_vecevent::neuron | |
| 164/184 Test #143: testcorenrn_vecevent::neuron ....................................... Passed 8.12 sec | |
| Start 144: testcorenrn_vecevent::coreneuron_gpu_online | |
| 165/184 Test #28: coreneuron_modtests::test_pointer_py_cpu ........................... Passed 279.46 sec | |
| 166/184 Test #59: reduced_dentate::coreneuron_cpu .................................... Passed 51.30 sec | |
| Start 68: external_ringtest::coreneuron_cpu_mpi_threads | |
| 167/184 Test #60: reduced_dentate::coreneuron_gpu .................................... Passed 54.96 sec | |
| Start 145: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate | |
| 168/184 Test #144: testcorenrn_vecevent::coreneuron_gpu_online ........................ Passed 55.18 sec | |
| Start 146: testcorenrn_vecevent::coreneuron_gpu_offline | |
| 169/184 Test #68: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 14.17 sec | |
| Start 73: external_ringtest::coreneuron_gpu_mpi_threads | |
| 170/184 Test #57: external_nrntest ................................................... Passed 199.63 sec | |
| Start 61: reduced_dentate::compare_results | |
| 171/184 Test #61: reduced_dentate::compare_results ................................... Passed 0.06 sec | |
| 172/184 Test #45: coreneuron_modtests::test_pointer_py_gpu ........................... Passed 221.24 sec | |
| 173/184 Test #145: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate ....... Passed 21.92 sec | |
| Start 148: testcorenrn_vecevent::coreneuron_cpu_online | |
| 174/184 Test #146: testcorenrn_vecevent::coreneuron_gpu_offline ....................... Passed 25.44 sec | |
| Start 149: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 175/184 Test #73: external_ringtest::coreneuron_gpu_mpi_threads ...................... Passed 32.50 sec | |
| Start 150: testcorenrn_vecevent::coreneuron_cpu_offline | |
| Start 178: olfactory-bulb-3d::neuron | |
| 176/184 Test #148: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 49.72 sec | |
| Start 180: olfactory-bulb-3d::coreneuron_gpu_online | |
| 177/184 Test #149: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 63.73 sec | |
| Start 182: olfactory-bulb-3d::coreneuron_cpu_online | |
| 178/184 Test #150: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 57.52 sec | |
| Start 74: external_ringtest::compare_results | |
| Start 152: testcorenrn_vecevent::compare_results | |
| 179/184 Test #152: testcorenrn_vecevent::compare_results .............................. Passed 2.82 sec | |
| 180/184 Test #74: external_ringtest::compare_results ................................. Passed 3.27 sec | |
| 181/184 Test #178: olfactory-bulb-3d::neuron .......................................... Passed 132.78 sec | |
| 182/184 Test #180: olfactory-bulb-3d::coreneuron_gpu_online ........................... Passed 107.67 sec | |
| 183/184 Test #182: olfactory-bulb-3d::coreneuron_cpu_online ........................... Passed 95.48 sec | |
| Start 184: olfactory-bulb-3d::compare_results | |
| 184/184 Test #184: olfactory-bulb-3d::compare_results ................................. Passed 0.24 sec | |
| 100% tests passed, 0 tests failed out of 184 | |
| Total Test time (real) = 1065.56 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1655889004:step_script [0Ksection_start:1655889004:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=31222 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272595 responseStatus[0;m=201 Created token[0;m=MnRqPUNB | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=31274 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272595 responseStatus[0;m=201 Created token[0;m=MnRqPUNB | |
| section_end:1655889006:upload_artifacts_on_success [0Ksection_start:1655889006:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655889007:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655887830:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655887830:resolve_secrets [0Ksection_start:1655887830:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor160615590, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61703, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272593 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J272593_PROD_P112_CP0_C0 | |
| Job parameters: memory=76G, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 563862 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=76G --job-name=GL_J272593_PROD_P112_CP0_C0 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61703 --ntasks=16 --jobid=563862 --cpus-per-task=1 --mem=76G | |
| section_end:1655887832:prepare_executor [0Ksection_start:1655887832:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch... | |
| section_end:1655887839:prepare_script [0Ksection_start:1655887839:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655887840:get_sources [0Ksection_start:1655887840:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron:nmodl:nvhpc:omp (272571)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=77952 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272571 responseStatus[0;m=200 OK token[0;m=YdQ518dT | |
| section_end:1655887841:download_artifacts [0Ksection_start:1655887841:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i5n4 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220622-0851 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61703/J272571/spack-build/spack-stage-neuron-develop-2supl4esjx3ghhb3azj32rf6llwrd6wk/spack-build-2supl4e | |
| Start 67: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 72: external_ringtest::coreneuron_gpu_mpi_offline::preparation | |
| Start 79: testcorenrn_bbcore::coreneuron_gpu_offline::preparation | |
| Start 83: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 89: testcorenrn_conc::coreneuron_gpu_offline::preparation | |
| Start 93: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| Start 99: testcorenrn_deriv::coreneuron_gpu_offline::preparation | |
| Start 103: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| Start 109: testcorenrn_gf::coreneuron_gpu_offline::preparation | |
| Start 113: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| Start 119: testcorenrn_kin::coreneuron_gpu_offline::preparation | |
| Start 123: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| 1/184 Test #79: testcorenrn_bbcore::coreneuron_gpu_offline::preparation ............ Passed 3.00 sec | |
| Start 128: testcorenrn_patstim::coreneuron_gpu_offline::preparation | |
| 2/184 Test #99: testcorenrn_deriv::coreneuron_gpu_offline::preparation ............. Passed 3.58 sec | |
| Start 62: external_ringtest::neuron | |
| 3/184 Test #93: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 3.81 sec | |
| Start 75: testcorenrn_bbcore::neuron | |
| 4/184 Test #89: testcorenrn_conc::coreneuron_gpu_offline::preparation .............. Passed 3.84 sec | |
| Start 76: testcorenrn_bbcore::coreneuron_gpu_online | |
| 5/184 Test #109: testcorenrn_gf::coreneuron_gpu_offline::preparation ................ Passed 3.97 sec | |
| Start 131: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| 6/184 Test #103: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 4.00 sec | |
| Start 77: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate | |
| 7/184 Test #123: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 4.00 sec | |
| Start 78: testcorenrn_bbcore::coreneuron_gpu_offline | |
| 8/184 Test #83: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 4.09 sec | |
| Start 80: testcorenrn_bbcore::coreneuron_cpu_online | |
| 9/184 Test #119: testcorenrn_kin::coreneuron_gpu_offline::preparation ............... Passed 4.07 sec | |
| Start 81: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 10/184 Test #113: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 4.17 sec | |
| Start 137: testcorenrn_vecplay::coreneuron_gpu_offline::preparation | |
| 11/184 Test #128: testcorenrn_patstim::coreneuron_gpu_offline::preparation ........... Passed 1.47 sec | |
| Start 82: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 12/184 Test #62: external_ringtest::neuron .......................................... Passed 1.33 sec | |
| Start 85: testcorenrn_conc::neuron | |
| 13/184 Test #75: testcorenrn_bbcore::neuron ......................................... Passed 1.50 sec | |
| Start 86: testcorenrn_conc::coreneuron_gpu_online | |
| 14/184 Test #131: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 2.88 sec | |
| Start 141: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 15/184 Test #137: testcorenrn_vecplay::coreneuron_gpu_offline::preparation ........... Passed 2.96 sec | |
| Start 157: testcorenrn_watch::coreneuron_gpu_offline::preparation | |
| 16/184 Test #85: testcorenrn_conc::neuron ........................................... Passed 2.46 sec | |
| Start 87: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate | |
| 17/184 Test #141: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 1.53 sec | |
| Start 161: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 18/184 Test #157: testcorenrn_watch::coreneuron_gpu_offline::preparation ............. Passed 1.55 sec | |
| Start 63: external_ringtest::neuron_mpi | |
| 19/184 Test #161: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 1.50 sec | |
| Start 64: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
| 20/184 Test #63: external_ringtest::neuron_mpi ...................................... Passed 2.23 sec | |
| Start 65: external_ringtest::coreneuron_cpu_mpi | |
| 21/184 Test #80: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 58.60 sec | |
| Start 88: testcorenrn_conc::coreneuron_gpu_offline | |
| 22/184 Test #82: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 76.50 sec | |
| Start 90: testcorenrn_conc::coreneuron_cpu_online | |
| 23/184 Test #72: external_ringtest::coreneuron_gpu_mpi_offline::preparation ......... Passed 81.26 sec | |
| Start 69: external_ringtest::coreneuron_gpu_mpi_offline_saverestore | |
| 24/184 Test #78: testcorenrn_bbcore::coreneuron_gpu_offline ......................... Passed 80.21 sec | |
| Start 91: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 25/184 Test #67: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 84.91 sec | |
| Start 66: external_ringtest::coreneuron_cpu_mpi_offline | |
| 26/184 Test #86: testcorenrn_conc::coreneuron_gpu_online ............................ Passed 80.01 sec | |
| Start 92: testcorenrn_conc::coreneuron_cpu_offline | |
| 27/184 Test #81: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 84.03 sec | |
| Start 95: testcorenrn_deriv::neuron | |
| 28/184 Test #95: testcorenrn_deriv::neuron .......................................... Passed 1.39 sec | |
| Start 96: testcorenrn_deriv::coreneuron_gpu_online | |
| 29/184 Test #76: testcorenrn_bbcore::coreneuron_gpu_online .......................... Passed 87.16 sec | |
| Start 97: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate | |
| 30/184 Test #65: external_ringtest::coreneuron_cpu_mpi .............................. Passed 99.99 sec | |
| Start 70: external_ringtest::coreneuron_gpu_mpi | |
| 31/184 Test #77: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate ......... Passed 107.75 sec | |
| Start 98: testcorenrn_deriv::coreneuron_gpu_offline | |
| 32/184 Test #87: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate ........... Passed 104.47 sec | |
| Start 100: testcorenrn_deriv::coreneuron_cpu_online | |
| 33/184 Test #90: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 67.63 sec | |
| Start 101: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 34/184 Test #91: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 73.88 sec | |
| Start 102: testcorenrn_deriv::coreneuron_cpu_offline | |
| 35/184 Test #88: testcorenrn_conc::coreneuron_gpu_offline ........................... Passed 96.17 sec | |
| Start 115: testcorenrn_kin::neuron | |
| 36/184 Test #115: testcorenrn_kin::neuron ............................................ Passed 1.45 sec | |
| Start 116: testcorenrn_kin::coreneuron_gpu_online | |
| 37/184 Test #96: testcorenrn_deriv::coreneuron_gpu_online ........................... Passed 73.00 sec | |
| Start 117: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate | |
| 38/184 Test #92: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 80.20 sec | |
| Start 118: testcorenrn_kin::coreneuron_gpu_offline | |
| 39/184 Test #66: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 83.68 sec | |
| Start 71: external_ringtest::coreneuron_gpu_mpi_offline | |
| 40/184 Test #70: external_ringtest::coreneuron_gpu_mpi .............................. Passed 68.77 sec | |
| Start 105: testcorenrn_gf::neuron | |
| 41/184 Test #105: testcorenrn_gf::neuron ............................................. Passed 1.91 sec | |
| Start 106: testcorenrn_gf::coreneuron_gpu_online | |
| 42/184 Test #97: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate .......... Passed 112.52 sec | |
| Start 120: testcorenrn_kin::coreneuron_cpu_online | |
| 43/184 Test #98: testcorenrn_deriv::coreneuron_gpu_offline .......................... Passed 97.58 sec | |
| Start 121: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 44/184 Test #100: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 97.65 sec | |
| Start 122: testcorenrn_kin::coreneuron_cpu_offline | |
| 45/184 Test #102: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 57.23 sec | |
| Start 126: testcorenrn_patstim::coreneuron_gpu_offline_saverestore | |
| 46/184 Test #101: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 104.82 sec | |
| Start 127: testcorenrn_patstim::coreneuron_gpu_offline | |
| 47/184 Test #120: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 59.85 sec | |
| Start 166: channel_benchmark_hippo::neuron | |
| 48/184 Test #116: testcorenrn_kin::coreneuron_gpu_online ............................. Passed 105.76 sec | |
| Start 167: channel_benchmark_hippo::coreneuron_gpu_online | |
| 49/184 Test #118: testcorenrn_kin::coreneuron_gpu_offline ............................ Passed 101.37 sec | |
| Start 168: channel_benchmark_hippo::coreneuron_gpu_filemode | |
| 50/184 Test #71: external_ringtest::coreneuron_gpu_mpi_offline ...................... Passed 132.05 sec | |
| Start 107: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate | |
| 51/184 Test #122: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 91.25 sec | |
| Start 169: channel_benchmark_hippo::coreneuron_cpu_online | |
| 52/184 Test #117: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate ............ Passed 138.33 sec | |
| Start 170: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 53/184 Test #106: testcorenrn_gf::coreneuron_gpu_online .............................. Passed 119.38 sec | |
| Start 108: testcorenrn_gf::coreneuron_gpu_offline | |
| 54/184 Test #121: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 91.78 sec | |
| Start 172: channel_benchmark_sscx::neuron | |
| 55/184 Test #64: external_ringtest::coreneuron_cpu_mpi_offline_saverestore .......... Passed 344.56 sec | |
| Start 110: testcorenrn_gf::coreneuron_cpu_online | |
| 56/184 Test #127: testcorenrn_patstim::coreneuron_gpu_offline ........................ Passed 105.90 sec | |
| Start 173: channel_benchmark_sscx::coreneuron_gpu_online | |
| 57/184 Test #166: channel_benchmark_hippo::neuron .................................... Passed 99.01 sec | |
| Start 174: channel_benchmark_sscx::coreneuron_gpu_filemode | |
| 58/184 Test #172: channel_benchmark_sscx::neuron ..................................... Passed 118.30 sec | |
| Start 175: channel_benchmark_sscx::coreneuron_cpu_online | |
| 59/184 Test #108: testcorenrn_gf::coreneuron_gpu_offline ............................. Passed 142.97 sec | |
| Start 111: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 60/184 Test #107: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate ............. Passed 177.81 sec | |
| Start 112: testcorenrn_gf::coreneuron_cpu_offline | |
| 61/184 Test #69: external_ringtest::coreneuron_gpu_mpi_offline_saverestore .......... Passed 428.34 sec | |
| Start 125: testcorenrn_patstim::neuron | |
| 62/184 Test #125: testcorenrn_patstim::neuron ........................................ Passed 2.14 sec | |
| Start 129: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
| 63/184 Test #126: testcorenrn_patstim::coreneuron_gpu_offline_saverestore ............ Passed 299.50 sec | |
| Start 176: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 64/184 Test #168: channel_benchmark_hippo::coreneuron_gpu_filemode ................... Passed 251.81 sec | |
| Start 1: testneuron | |
| 65/184 Test #1: testneuron ......................................................... Passed 0.06 sec | |
| Start 2: ringtest | |
| 66/184 Test #2: ringtest ........................................................... Passed 0.24 sec | |
| Start 3: connect_dend | |
| 67/184 Test #3: connect_dend ....................................................... Passed 0.14 sec | |
| Start 4: mpi_init::nrniv_mpiopt | |
| 68/184 Test #110: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 164.74 sec | |
| Start 130: testcorenrn_patstim::coreneuron_cpu_offline | |
| 69/184 Test #167: channel_benchmark_hippo::coreneuron_gpu_online ..................... Passed 253.31 sec | |
| Start 5: mpi_init::nrniv_nrnmpi_init | |
| 70/184 Test #5: mpi_init::nrniv_nrnmpi_init ........................................ Passed 0.30 sec | |
| Start 6: mpi_init::python_nrnmpi_init | |
| 71/184 Test #4: mpi_init::nrniv_mpiopt ............................................. Passed 0.52 sec | |
| Start 7: mpi_init::python_mpienv | |
| 72/184 Test #6: mpi_init::python_nrnmpi_init ....................................... Passed 0.82 sec | |
| Start 8: mpi_init::nrniv_mpiexec_mpiopt | |
| 73/184 Test #7: mpi_init::python_mpienv ............................................ Passed 1.89 sec | |
| Start 9: mpi_init::nrniv_mpiexec_nrnmpi_init | |
| 74/184 Test #8: mpi_init::nrniv_mpiexec_mpiopt ..................................... Passed 1.51 sec | |
| Start 10: mpi_init::python_mpiexec_nrnmpi_init | |
| 75/184 Test #9: mpi_init::nrniv_mpiexec_nrnmpi_init ................................ Passed 1.42 sec | |
| Start 11: mpi_init::python_mpiexec_mpienv | |
| 76/184 Test #10: mpi_init::python_mpiexec_nrnmpi_init ............................... Passed 1.87 sec | |
| Start 12: pynrn::basic_tests | |
| 77/184 Test #11: mpi_init::python_mpiexec_mpienv .................................... Passed 7.96 sec | |
| Start 13: coverage_tests::cover_tests | |
| 78/184 Test #13: coverage_tests::cover_tests ........................................ Passed 2.13 sec | |
| Start 14: parallel_tests | |
| 79/184 Test #12: pynrn::basic_tests ................................................. Passed 14.22 sec | |
| Start 15: parallel_partrans | |
| 80/184 Test #14: parallel_tests ..................................................... Passed 6.92 sec | |
| Start 16: parallel_netpar | |
| 81/184 Test #15: parallel_partrans .................................................. Passed 3.82 sec | |
| Start 17: parallel_bas | |
| 82/184 Test #16: parallel_netpar .................................................... Passed 3.21 sec | |
| Start 18: coreneuron_modtests::version_macros | |
| 83/184 Test #17: parallel_bas ....................................................... Passed 4.62 sec | |
| Start 19: coreneuron_modtests::fornetcon_py_cpu | |
| 84/184 Test #169: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 253.77 sec | |
| Start 20: coreneuron_modtests::direct_py_cpu | |
| 85/184 Test #170: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 253.74 sec | |
| Start 21: coreneuron_modtests::direct_hoc_cpu | |
| 86/184 Test #111: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 111.45 sec | |
| Start 133: testcorenrn_vecplay::neuron | |
| 87/184 Test #174: channel_benchmark_sscx::coreneuron_gpu_filemode .................... Passed 193.60 sec | |
| Start 22: coreneuron_modtests::spikes_py_cpu | |
| 88/184 Test #175: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 136.79 sec | |
| Start 23: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 89/184 Test #173: channel_benchmark_sscx::coreneuron_gpu_online ...................... Passed 196.96 sec | |
| Start 24: coreneuron_modtests::fast_imem_py_cpu | |
| 90/184 Test #133: testcorenrn_vecplay::neuron ........................................ Passed 2.67 sec | |
| Start 134: testcorenrn_vecplay::coreneuron_gpu_online | |
| 91/184 Test #24: coreneuron_modtests::fast_imem_py_cpu .............................. Passed 1.87 sec | |
| Start 25: coreneuron_modtests::datareturn_py_cpu | |
| 92/184 Test #112: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 109.11 sec | |
| Start 135: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate | |
| 93/184 Test #18: coreneuron_modtests::version_macros ................................ Passed 48.66 sec | |
| Start 26: coreneuron_modtests::test_units_py_cpu | |
| 94/184 Test #130: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 73.30 sec | |
| Start 136: testcorenrn_vecplay::coreneuron_gpu_offline | |
| 95/184 Test #19: coreneuron_modtests::fornetcon_py_cpu .............................. Passed 51.47 sec | |
| Start 27: coreneuron_modtests::test_netmove_py_cpu | |
| 96/184 Test #176: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 84.74 sec | |
| Start 28: coreneuron_modtests::test_pointer_py_cpu | |
| 97/184 Test #21: coreneuron_modtests::direct_hoc_cpu ................................ Passed 59.86 sec | |
| Start 29: coreneuron_modtests::test_watchrange_py_cpu | |
| 98/184 Test #23: coreneuron_modtests::spikes_file_mode_py_cpu ....................... Passed 58.27 sec | |
| Start 30: coreneuron_modtests::test_psolve_py_cpu | |
| 99/184 Test #20: coreneuron_modtests::direct_py_cpu ................................. Passed 60.01 sec | |
| Start 31: coreneuron_modtests::test_ba_py_cpu | |
| 100/184 Test #22: coreneuron_modtests::spikes_py_cpu ................................. Passed 58.62 sec | |
| Start 32: coreneuron_modtests::test_natrans_py_cpu | |
| 101/184 Test #25: coreneuron_modtests::datareturn_py_cpu ............................. Passed 58.63 sec | |
| Start 36: coreneuron_modtests::fornetcon_py_gpu | |
| 102/184 Test #134: testcorenrn_vecplay::coreneuron_gpu_online ......................... Passed 66.26 sec | |
| Start 138: testcorenrn_vecplay::coreneuron_cpu_online | |
| 103/184 Test #26: coreneuron_modtests::test_units_py_cpu ............................. Passed 52.34 sec | |
| Start 37: coreneuron_modtests::direct_py_gpu | |
| 104/184 Test #129: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............ Passed 133.72 sec | |
| Start 139: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 105/184 Test #27: coreneuron_modtests::test_netmove_py_cpu ........................... Passed 59.93 sec | |
| Start 38: coreneuron_modtests::direct_hoc_gpu | |
| 106/184 Test #136: testcorenrn_vecplay::coreneuron_gpu_offline ........................ Passed 66.28 sec | |
| Start 140: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 107/184 Test #135: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate ........ Passed 72.00 sec | |
| Start 153: testcorenrn_watch::neuron | |
| 108/184 Test #153: testcorenrn_watch::neuron .......................................... Passed 4.59 sec | |
| Start 154: testcorenrn_watch::coreneuron_gpu_online | |
| 109/184 Test #32: coreneuron_modtests::test_natrans_py_cpu ........................... Passed 54.86 sec | |
| Start 39: coreneuron_modtests::spikes_py_gpu | |
| 110/184 Test #31: coreneuron_modtests::test_ba_py_cpu ................................ Passed 54.98 sec | |
| Start 40: coreneuron_modtests::spikes_file_mode_py_gpu | |
| 111/184 Test #36: coreneuron_modtests::fornetcon_py_gpu .............................. Passed 52.82 sec | |
| Start 41: coreneuron_modtests::fast_imem_py_gpu | |
| 112/184 Test #30: coreneuron_modtests::test_psolve_py_cpu ............................ Passed 55.14 sec | |
| Start 42: coreneuron_modtests::datareturn_py_gpu | |
| 113/184 Test #29: coreneuron_modtests::test_watchrange_py_cpu ........................ Passed 55.46 sec | |
| Start 43: coreneuron_modtests::test_units_py_gpu | |
| 114/184 Test #41: coreneuron_modtests::fast_imem_py_gpu .............................. Passed 1.50 sec | |
| Start 44: coreneuron_modtests::test_netmove_py_gpu | |
| 115/184 Test #138: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 57.39 sec | |
| Start 155: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate | |
| 116/184 Test #37: coreneuron_modtests::direct_py_gpu ................................. Passed 44.90 sec | |
| Start 45: coreneuron_modtests::test_pointer_py_gpu | |
| 117/184 Test #139: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 45.39 sec | |
| Start 156: testcorenrn_watch::coreneuron_gpu_offline | |
| 118/184 Test #38: coreneuron_modtests::direct_hoc_gpu ................................ Passed 58.02 sec | |
| Start 46: coreneuron_modtests::test_watchrange_py_gpu | |
| 119/184 Test #154: testcorenrn_watch::coreneuron_gpu_online ........................... Passed 53.25 sec | |
| Start 158: testcorenrn_watch::coreneuron_cpu_online | |
| 120/184 Test #140: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 58.63 sec | |
| Start 159: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 121/184 Test #40: coreneuron_modtests::spikes_file_mode_py_gpu ....................... Passed 49.54 sec | |
| Start 47: coreneuron_modtests::test_psolve_py_gpu | |
| 122/184 Test #39: coreneuron_modtests::spikes_py_gpu ................................. Passed 50.11 sec | |
| Start 48: coreneuron_modtests::test_ba_py_gpu | |
| 123/184 Test #44: coreneuron_modtests::test_netmove_py_gpu ........................... Passed 49.40 sec | |
| Start 49: coreneuron_modtests::test_natrans_py_gpu | |
| 124/184 Test #42: coreneuron_modtests::datareturn_py_gpu ............................. Passed 51.45 sec | |
| Start 53: modlunit_unitstest | |
| 125/184 Test #53: modlunit_unitstest ................................................. Passed 0.02 sec | |
| Start 54: modlunit_hh | |
| 126/184 Test #54: modlunit_hh ........................................................ Passed 0.02 sec | |
| Start 55: modlunit_stim | |
| 127/184 Test #55: modlunit_stim ...................................................... Passed 0.01 sec | |
| Start 56: modlunit_pattern | |
| 128/184 Test #56: modlunit_pattern ................................................... Passed 0.01 sec | |
| Start 57: external_nrntest | |
| 129/184 Test #43: coreneuron_modtests::test_units_py_gpu ............................. Passed 54.69 sec | |
| Start 84: testcorenrn_bbcore::compare_results | |
| 130/184 Test #84: testcorenrn_bbcore::compare_results ................................ Passed 0.07 sec | |
| Start 94: testcorenrn_conc::compare_results | |
| 131/184 Test #94: testcorenrn_conc::compare_results .................................. Passed 0.06 sec | |
| Start 104: testcorenrn_deriv::compare_results | |
| 132/184 Test #104: testcorenrn_deriv::compare_results ................................. Passed 0.06 sec | |
| Start 114: testcorenrn_gf::compare_results | |
| 133/184 Test #114: testcorenrn_gf::compare_results .................................... Passed 0.06 sec | |
| Start 124: testcorenrn_kin::compare_results | |
| 134/184 Test #124: testcorenrn_kin::compare_results ................................... Passed 0.06 sec | |
| Start 132: testcorenrn_patstim::compare_results | |
| 135/184 Test #132: testcorenrn_patstim::compare_results ............................... Passed 0.07 sec | |
| Start 142: testcorenrn_vecplay::compare_results | |
| 136/184 Test #142: testcorenrn_vecplay::compare_results ............................... Passed 0.06 sec | |
| Start 171: channel_benchmark_hippo::compare_results | |
| 137/184 Test #171: channel_benchmark_hippo::compare_results ........................... Passed 0.06 sec | |
| Start 177: channel_benchmark_sscx::compare_results | |
| 138/184 Test #177: channel_benchmark_sscx::compare_results ............................ Passed 0.06 sec | |
| 139/184 Test #155: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate .......... Passed 54.21 sec | |
| Start 160: testcorenrn_watch::coreneuron_cpu_offline | |
| 140/184 Test #156: testcorenrn_watch::coreneuron_gpu_offline .......................... Passed 62.67 sec | |
| Start 163: testcorenrn_netstimdirect::direct_netstimdirect | |
| 141/184 Test #46: coreneuron_modtests::test_watchrange_py_gpu ........................ Passed 52.95 sec | |
| Start 164: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 142/184 Test #158: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 52.45 sec | |
| Start 33: coreneuron_modtests::spikes_mpi_py_cpu | |
| 143/184 Test #49: coreneuron_modtests::test_natrans_py_gpu ........................... Passed 57.19 sec | |
| 144/184 Test #47: coreneuron_modtests::test_psolve_py_gpu ............................ Passed 58.70 sec | |
| Start 34: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 145/184 Test #48: coreneuron_modtests::test_ba_py_gpu ................................ Passed 58.25 sec | |
| 146/184 Test #159: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 62.04 sec | |
| Start 35: coreneuron_modtests::inputpresyn_py_cpu | |
| 147/184 Test #160: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 64.81 sec | |
| Start 50: coreneuron_modtests::spikes_mpi_py_gpu | |
| Start 162: testcorenrn_watch::compare_results | |
| 148/184 Test #162: testcorenrn_watch::compare_results ................................. Passed 0.15 sec | |
| 149/184 Test #163: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 48.86 sec | |
| Start 51: coreneuron_modtests::spikes_mpi_file_mode_py_gpu | |
| 150/184 Test #164: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 61.40 sec | |
| Start 52: coreneuron_modtests::inputpresyn_py_gpu | |
| Start 165: testcorenrn_netstimdirect::compare_results | |
| 151/184 Test #33: coreneuron_modtests::spikes_mpi_py_cpu ............................. Passed 60.71 sec | |
| 152/184 Test #35: coreneuron_modtests::inputpresyn_py_cpu ............................ Passed 51.13 sec | |
| Start 147: testcorenrn_vecevent::coreneuron_gpu_offline::preparation | |
| 153/184 Test #34: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................... Passed 52.99 sec | |
| 154/184 Test #165: testcorenrn_netstimdirect::compare_results ......................... Passed 0.73 sec | |
| 155/184 Test #147: testcorenrn_vecevent::coreneuron_gpu_offline::preparation .......... Passed 11.58 sec | |
| Start 151: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 156/184 Test #51: coreneuron_modtests::spikes_mpi_file_mode_py_gpu ................... Passed 43.96 sec | |
| Start 179: olfactory-bulb-3d::neuron::preparation | |
| 157/184 Test #179: olfactory-bulb-3d::neuron::preparation ............................. Passed 0.16 sec | |
| Start 181: olfactory-bulb-3d::coreneuron_gpu_online::preparation | |
| 158/184 Test #50: coreneuron_modtests::spikes_mpi_py_gpu ............................. Passed 45.84 sec | |
| 159/184 Test #181: olfactory-bulb-3d::coreneuron_gpu_online::preparation .............. Passed 0.17 sec | |
| Start 183: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| 160/184 Test #183: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............. Passed 0.25 sec | |
| Start 58: reduced_dentate::neuron | |
| 161/184 Test #151: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 5.80 sec | |
| Start 59: reduced_dentate::coreneuron_cpu | |
| 162/184 Test #58: reduced_dentate::neuron ............................................ Passed 7.76 sec | |
| Start 60: reduced_dentate::coreneuron_gpu | |
| 163/184 Test #57: external_nrntest ................................................... Passed 135.31 sec | |
| Start 143: testcorenrn_vecevent::neuron | |
| 164/184 Test #143: testcorenrn_vecevent::neuron ....................................... Passed 11.47 sec | |
| Start 144: testcorenrn_vecevent::coreneuron_gpu_online | |
| 165/184 Test #52: coreneuron_modtests::inputpresyn_py_gpu ............................ Passed 44.44 sec | |
| 166/184 Test #28: coreneuron_modtests::test_pointer_py_cpu ........................... Passed 305.73 sec | |
| 167/184 Test #144: testcorenrn_vecevent::coreneuron_gpu_online ........................ Passed 45.62 sec | |
| Start 68: external_ringtest::coreneuron_cpu_mpi_threads | |
| 168/184 Test #60: reduced_dentate::coreneuron_gpu .................................... Passed 69.30 sec | |
| Start 145: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate | |
| 169/184 Test #59: reduced_dentate::coreneuron_cpu .................................... Passed 76.03 sec | |
| Start 146: testcorenrn_vecevent::coreneuron_gpu_offline | |
| Start 61: reduced_dentate::compare_results | |
| 170/184 Test #61: reduced_dentate::compare_results ................................... Passed 0.07 sec | |
| 171/184 Test #68: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 27.00 sec | |
| Start 73: external_ringtest::coreneuron_gpu_mpi_threads | |
| 172/184 Test #146: testcorenrn_vecevent::coreneuron_gpu_offline ....................... Passed 20.77 sec | |
| Start 148: testcorenrn_vecevent::coreneuron_cpu_online | |
| 173/184 Test #45: coreneuron_modtests::test_pointer_py_gpu ........................... Passed 262.14 sec | |
| 174/184 Test #145: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate ....... Passed 42.89 sec | |
| Start 149: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 175/184 Test #148: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 33.41 sec | |
| Start 150: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 176/184 Test #73: external_ringtest::coreneuron_gpu_mpi_threads ...................... Passed 46.02 sec | |
| Start 178: olfactory-bulb-3d::neuron | |
| Start 180: olfactory-bulb-3d::coreneuron_gpu_online | |
| 177/184 Test #150: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 52.95 sec | |
| Start 182: olfactory-bulb-3d::coreneuron_cpu_online | |
| 178/184 Test #149: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 85.15 sec | |
| Start 74: external_ringtest::compare_results | |
| Start 152: testcorenrn_vecevent::compare_results | |
| 179/184 Test #152: testcorenrn_vecevent::compare_results .............................. Passed 0.07 sec | |
| 180/184 Test #74: external_ringtest::compare_results ................................. Passed 0.08 sec | |
| 181/184 Test #178: olfactory-bulb-3d::neuron .......................................... Passed 196.87 sec | |
| 182/184 Test #180: olfactory-bulb-3d::coreneuron_gpu_online ........................... Passed 198.93 sec | |
| 183/184 Test #182: olfactory-bulb-3d::coreneuron_cpu_online ........................... Passed 163.74 sec | |
| Start 184: olfactory-bulb-3d::compare_results | |
| 184/184 Test #184: olfactory-bulb-3d::compare_results ................................. Passed 0.23 sec | |
| 100% tests passed, 0 tests failed out of 184 | |
| Total Test time (real) = 1195.30 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1655889061:step_script [0Ksection_start:1655889061:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=31740 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272593 responseStatus[0;m=201 Created token[0;m=N5Veb1W8 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=31796 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272593 responseStatus[0;m=201 Created token[0;m=N5Veb1W8 | |
| section_end:1655889063:upload_artifacts_on_success [0Ksection_start:1655889063:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655889064:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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