(partial) EasyBuild log for failed build of /user/brussel/101/vsc10122/.local/easybuild-skylake/tmp/eb-S60DbH/files_pr12822/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.12-foss-2020b-R-4.0.3.eb (PR #12822)

R-bundle-Bioconductor-3.12-foss-2020b-R-4.0.3_partial.log

== 2021-05-12 02:28:08,611 environment.py:91 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:28:08,611 environment.py:91 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:28:08,611 environment.py:91 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:28:08,611 environment.py:91 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:28:08,611 environment.py:91 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native')
== 2021-05-12 02:28:08,611 environment.py:91 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native')
== 2021-05-12 02:28:08,611 environment.py:91 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno')
== 2021-05-12 02:28:08,611 environment.py:91 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno')
== 2021-05-12 02:28:08,612 environment.py:91 INFO Environment variable SCALAPACK_INC_DIR set to  (previous value: '')
== 2021-05-12 02:28:08,612 environment.py:91 INFO Environment variable EBVARSCALAPACK_INC_DIR set to  (previous value: '')
== 2021-05-12 02:28:08,612 environment.py:91 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib (previous value: '/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib')
== 2021-05-12 02:28:08,612 environment.py:91 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib (previous value: '/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib')
== 2021-05-12 02:28:08,612 environment.py:91 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a')
== 2021-05-12 02:28:08,612 environment.py:91 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a')
== 2021-05-12 02:28:08,612 environment.py:91 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a')
== 2021-05-12 02:28:08,612 environment.py:91 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a')
== 2021-05-12 02:28:08,613 filetools.py:1728 INFO Creating directory /user/brussel/101/vsc10122/.local/easybuild-skylake/build/RbundleBioconductor/3.12/foss-2020b-R-4.0.3/IlluminaHumanMethylation450kannoilmn12hg19 (parents: True, set_gid: False, sticky: False)
== 2021-05-12 02:28:08,614 run.py:226 INFO running cmd: tar xzf /user/brussel/101/vsc10122/.local/easybuild-skylake/sources/r/R-bundle-Bioconductor/extensions/IlluminaHumanMethylation450kanno.ilmn12.hg19_0.6.0.tar.gz 
== 2021-05-12 02:28:09,265 run.py:226 INFO running cmd:  R CMD INSTALL /theia/scratch/brussel/vo/000/bvo00005/vsc10122/easybuild/sl/build/RbundleBioconductor/3.12/foss-2020b-R-4.0.3/IlluminaHumanMethylation450kannoilmn12hg19/IlluminaHumanMethylation450kanno.ilmn12.hg19   --library=/user/brussel/101/vsc10122/.local/easybuild-skylake/software/R-bundle-Bioconductor/3.12-foss-2020b-R-4.0.3/ --no-clean-on-error  
== 2021-05-12 02:30:02,212 run.py:569 INFO cmd " R CMD INSTALL /theia/scratch/brussel/vo/000/bvo00005/vsc10122/easybuild/sl/build/RbundleBioconductor/3.12/foss-2020b-R-4.0.3/IlluminaHumanMethylation450kannoilmn12hg19/IlluminaHumanMethylation450kanno.ilmn12.hg19   --library=/user/brussel/101/vsc10122/.local/easybuild-skylake/software/R-bundle-Bioconductor/3.12-foss-2020b-R-4.0.3/ --no-clean-on-error " exited with exit code 0 and output:
* installing *source* package IlluminaHumanMethylation450kanno.ilmn12.hg19 ...
** using staged installation
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (IlluminaHumanMethylation450kanno.ilmn12.hg19)

== 2021-05-12 02:30:02,547 modules.py:606 INFO Checking whether foss/2020b exists...
== 2021-05-12 02:30:02,548 modules.py:614 INFO Module foss/2020b not found in list of available modules, checking via 'module show'...
== 2021-05-12 02:30:02,548 modules.py:634 INFO Result for existence check of foss/2020b module: True
== 2021-05-12 02:30:02,549 toolchain.py:756 INFO List of toolchain dependency modules and toolchain definition match!
== 2021-05-12 02:30:02,552 compiler.py:361 INFO _set_optimal_architecture: using march=native as optarch for x86_64.
== 2021-05-12 02:30:02,569 variables.py:201 WARNING flags_for_subdirs: directory /apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/include was not found
== 2021-05-12 02:30:02,575 environment.py:91 INFO Environment variable BLAS_INC_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include')
== 2021-05-12 02:30:02,575 environment.py:91 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include')
== 2021-05-12 02:30:02,575 environment.py:91 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include')
== 2021-05-12 02:30:02,575 environment.py:91 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include')
== 2021-05-12 02:30:02,576 environment.py:91 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib')
== 2021-05-12 02:30:02,576 environment.py:91 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib')
== 2021-05-12 02:30:02,576 environment.py:91 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libopenblas.a,libgfortran.a,libpthread.a')
== 2021-05-12 02:30:02,576 environment.py:91 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libopenblas.a,libgfortran.a,libpthread.a')
== 2021-05-12 02:30:02,576 environment.py:91 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2021-05-12 02:30:02,576 environment.py:91 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2021-05-12 02:30:02,577 environment.py:91 INFO Environment variable BLAS_LIB_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib')
== 2021-05-12 02:30:02,577 environment.py:91 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib')
== 2021-05-12 02:30:02,577 environment.py:91 INFO Environment variable BLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libopenblas.a,libgfortran.a,libpthread.a')
== 2021-05-12 02:30:02,577 environment.py:91 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libopenblas.a,libgfortran.a,libpthread.a')
== 2021-05-12 02:30:02,577 environment.py:91 INFO Environment variable BLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2021-05-12 02:30:02,577 environment.py:91 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2021-05-12 02:30:02,577 environment.py:91 INFO Environment variable CC set to gcc (previous value: 'gcc')
== 2021-05-12 02:30:02,578 environment.py:91 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc')
== 2021-05-12 02:30:02,578 environment.py:91 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:30:02,578 environment.py:91 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:30:02,578 environment.py:91 INFO Environment variable CPPFLAGS set to -I/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include -I/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include (previous value: '-I/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include -I/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include')
== 2021-05-12 02:30:02,578 environment.py:91 INFO Environment variable EBVARCPPFLAGS set to -I/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include -I/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include (previous value: '-I/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include -I/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include')
== 2021-05-12 02:30:02,578 environment.py:91 INFO Environment variable CXX set to g++ (previous value: 'g++')
== 2021-05-12 02:30:02,578 environment.py:91 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++')
== 2021-05-12 02:30:02,578 environment.py:91 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:30:02,578 environment.py:91 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:30:02,578 environment.py:91 INFO Environment variable F77 set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:30:02,578 environment.py:91 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:30:02,579 environment.py:91 INFO Environment variable F90 set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:30:02,579 environment.py:91 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:30:02,579 environment.py:91 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:30:02,579 environment.py:91 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:30:02,579 environment.py:91 INFO Environment variable FC set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:30:02,580 environment.py:91 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:30:02,580 environment.py:91 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:30:02,580 environment.py:91 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:30:02,580 environment.py:91 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:30:02,580 environment.py:91 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:30:02,580 environment.py:91 INFO Environment variable FFTW_INC_DIR set to /apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include (previous value: '/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include')
== 2021-05-12 02:30:02,580 environment.py:91 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include (previous value: '/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include')
== 2021-05-12 02:30:02,580 environment.py:91 INFO Environment variable FFTW_LIB_DIR set to /apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib (previous value: '/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib')
== 2021-05-12 02:30:02,580 environment.py:91 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib (previous value: '/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib')
== 2021-05-12 02:30:02,580 environment.py:91 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a')
== 2021-05-12 02:30:02,580 environment.py:91 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a')
== 2021-05-12 02:30:02,580 environment.py:91 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a')
== 2021-05-12 02:30:02,581 environment.py:91 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a')
== 2021-05-12 02:30:02,581 environment.py:91 INFO Environment variable FFT_INC_DIR set to /apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include (previous value: '/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include')
== 2021-05-12 02:30:02,581 environment.py:91 INFO Environment variable EBVARFFT_INC_DIR set to /apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include (previous value: '/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include')
== 2021-05-12 02:30:02,581 environment.py:91 INFO Environment variable FFT_LIB_DIR set to /apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib (previous value: '/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib')
== 2021-05-12 02:30:02,581 environment.py:91 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib (previous value: '/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib')
== 2021-05-12 02:30:02,581 environment.py:91 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a')
== 2021-05-12 02:30:02,581 environment.py:91 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a')
== 2021-05-12 02:30:02,581 environment.py:91 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a')
== 2021-05-12 02:30:02,582 environment.py:91 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a')
== 2021-05-12 02:30:02,582 environment.py:91 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran')
== 2021-05-12 02:30:02,582 environment.py:91 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran')
== 2021-05-12 02:30:02,582 environment.py:91 INFO Environment variable LAPACK_INC_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include')
== 2021-05-12 02:30:02,582 environment.py:91 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include')
== 2021-05-12 02:30:02,582 environment.py:91 INFO Environment variable LAPACK_LIB_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib')
== 2021-05-12 02:30:02,582 environment.py:91 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib')
== 2021-05-12 02:30:02,582 environment.py:91 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libopenblas.a,libgfortran.a,libpthread.a')
== 2021-05-12 02:30:02,583 environment.py:91 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libopenblas.a,libgfortran.a,libpthread.a')
== 2021-05-12 02:30:02,583 environment.py:91 INFO Environment variable LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2021-05-12 02:30:02,583 environment.py:91 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2021-05-12 02:30:02,583 environment.py:91 INFO Environment variable LDFLAGS set to -L/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib64 -L/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib -L/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib64 -L/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib -L/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib64 -L/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib -L/apps/brussel/CO7/skylake/software/GCCcore/10.2.0/lib64 -L/apps/brussel/CO7/skylake/software/GCCcore/10.2.0/lib (previous value: '-L/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib64 -L/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib -L/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib64 -L/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib -L/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib64 -L/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib -L/apps/brussel/CO7/skylake/software/GCCcore/10.2.0/lib64 -L/apps/brussel/CO7/skylake/software/GCCcore/10.2.0/lib')
== 2021-05-12 02:30:02,583 environment.py:91 INFO Environment variable EBVARLDFLAGS set to -L/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib64 -L/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib -L/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib64 -L/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib -L/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib64 -L/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib -L/apps/brussel/CO7/skylake/software/GCCcore/10.2.0/lib64 -L/apps/brussel/CO7/skylake/software/GCCcore/10.2.0/lib (previous value: '-L/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib64 -L/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib -L/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib64 -L/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib -L/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib64 -L/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib -L/apps/brussel/CO7/skylake/software/GCCcore/10.2.0/lib64 -L/apps/brussel/CO7/skylake/software/GCCcore/10.2.0/lib')
== 2021-05-12 02:30:02,588 environment.py:91 INFO Environment variable LIBBLAS set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2021-05-12 02:30:02,588 environment.py:91 INFO Environment variable EBVARLIBBLAS set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2021-05-12 02:30:02,588 environment.py:91 INFO Environment variable LIBBLAS_MT set to -lopenblas -lgfortran -lpthread (previous value: '-lopenblas -lgfortran -lpthread')
== 2021-05-12 02:30:02,588 environment.py:91 INFO Environment variable EBVARLIBBLAS_MT set to -lopenblas -lgfortran -lpthread (previous value: '-lopenblas -lgfortran -lpthread')
== 2021-05-12 02:30:02,588 environment.py:91 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3')
== 2021-05-12 02:30:02,588 environment.py:91 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3')
== 2021-05-12 02:30:02,588 environment.py:91 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread')
== 2021-05-12 02:30:02,588 environment.py:91 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread')
== 2021-05-12 02:30:02,588 environment.py:91 INFO Environment variable LIBLAPACK set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2021-05-12 02:30:02,588 environment.py:91 INFO Environment variable EBVARLIBLAPACK set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2021-05-12 02:30:02,588 environment.py:91 INFO Environment variable LIBLAPACK_MT set to -lopenblas -lgfortran -lpthread (previous value: '-lopenblas -lgfortran -lpthread')
== 2021-05-12 02:30:02,589 environment.py:91 INFO Environment variable EBVARLIBLAPACK_MT set to -lopenblas -lgfortran -lpthread (previous value: '-lopenblas -lgfortran -lpthread')
== 2021-05-12 02:30:02,589 environment.py:91 INFO Environment variable LIBLAPACK_MT_ONLY set to -lopenblas -lgfortran -lpthread (previous value: '-lopenblas -lgfortran -lpthread')
== 2021-05-12 02:30:02,589 environment.py:91 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lopenblas -lgfortran -lpthread (previous value: '-lopenblas -lgfortran -lpthread')
== 2021-05-12 02:30:02,589 environment.py:91 INFO Environment variable LIBLAPACK_ONLY set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2021-05-12 02:30:02,589 environment.py:91 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2021-05-12 02:30:02,589 environment.py:91 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread')
== 2021-05-12 02:30:02,589 environment.py:91 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread')
== 2021-05-12 02:30:02,589 environment.py:91 INFO Environment variable LIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previous value: '-lscalapack -lopenblas -lgfortran')
== 2021-05-12 02:30:02,589 environment.py:91 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previous value: '-lscalapack -lopenblas -lgfortran')
== 2021-05-12 02:30:02,590 environment.py:91 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lopenblas -lgfortran -lpthread (previous value: '-lscalapack -lopenblas -lgfortran -lpthread')
== 2021-05-12 02:30:02,590 environment.py:91 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lopenblas -lgfortran -lpthread (previous value: '-lscalapack -lopenblas -lgfortran -lpthread')
== 2021-05-12 02:30:02,590 environment.py:91 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran')
== 2021-05-12 02:30:02,590 environment.py:91 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran')
== 2021-05-12 02:30:02,590 environment.py:91 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran')
== 2021-05-12 02:30:02,590 environment.py:91 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran')
== 2021-05-12 02:30:02,590 environment.py:91 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc')
== 2021-05-12 02:30:02,590 environment.py:91 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc')
== 2021-05-12 02:30:02,591 environment.py:91 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx')
== 2021-05-12 02:30:02,591 environment.py:91 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx')
== 2021-05-12 02:30:02,591 environment.py:91 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort')
== 2021-05-12 02:30:02,591 environment.py:91 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort')
== 2021-05-12 02:30:02,591 environment.py:91 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort')
== 2021-05-12 02:30:02,591 environment.py:91 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort')
== 2021-05-12 02:30:02,591 environment.py:91 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort')
== 2021-05-12 02:30:02,591 environment.py:91 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort')
== 2021-05-12 02:30:02,591 environment.py:91 INFO Environment variable MPI_INC_DIR set to /apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/include (previous value: '/apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/include')
== 2021-05-12 02:30:02,591 environment.py:91 INFO Environment variable EBVARMPI_INC_DIR set to /apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/include (previous value: '/apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/include')
== 2021-05-12 02:30:02,591 environment.py:91 INFO Environment variable MPI_LIB_DIR set to /apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/lib64 (previous value: '/apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/lib64')
== 2021-05-12 02:30:02,591 environment.py:91 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/lib64 (previous value: '/apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/lib64')
== 2021-05-12 02:30:02,591 environment.py:91 INFO Environment variable MPI_LIB_SHARED set to /apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/lib64/libmpi.so (previous value: '/apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/lib64/libmpi.so')
== 2021-05-12 02:30:02,592 environment.py:91 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/lib64/libmpi.so (previous value: '/apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/lib64/libmpi.so')
== 2021-05-12 02:30:02,592 environment.py:91 INFO Environment variable MPI_LIB_STATIC set to  (previous value: '')
== 2021-05-12 02:30:02,592 environment.py:91 INFO Environment variable EBVARMPI_LIB_STATIC set to  (previous value: '')
== 2021-05-12 02:30:02,592 environment.py:91 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc')
== 2021-05-12 02:30:02,592 environment.py:91 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc')
== 2021-05-12 02:30:02,592 environment.py:91 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++')
== 2021-05-12 02:30:02,592 environment.py:91 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++')
== 2021-05-12 02:30:02,592 environment.py:91 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:30:02,593 environment.py:91 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:30:02,593 environment.py:91 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:30:02,593 environment.py:91 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:30:02,593 environment.py:91 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:30:02,593 environment.py:91 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:30:02,593 environment.py:91 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native')
== 2021-05-12 02:30:02,593 environment.py:91 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native')
== 2021-05-12 02:30:02,593 environment.py:91 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno')
== 2021-05-12 02:30:02,594 environment.py:91 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno')
== 2021-05-12 02:30:02,594 environment.py:91 INFO Environment variable SCALAPACK_INC_DIR set to  (previous value: '')
== 2021-05-12 02:30:02,594 environment.py:91 INFO Environment variable EBVARSCALAPACK_INC_DIR set to  (previous value: '')
== 2021-05-12 02:30:02,594 environment.py:91 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib (previous value: '/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib')
== 2021-05-12 02:30:02,594 environment.py:91 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib (previous value: '/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib')
== 2021-05-12 02:30:02,594 environment.py:91 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a')
== 2021-05-12 02:30:02,594 environment.py:91 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a')
== 2021-05-12 02:30:02,594 environment.py:91 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a')
== 2021-05-12 02:30:02,594 environment.py:91 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a')
== 2021-05-12 02:30:02,596 filetools.py:1728 INFO Creating directory /user/brussel/101/vsc10122/.local/easybuild-skylake/build/RbundleBioconductor/3.12/foss-2020b-R-4.0.3/IlluminaHumanMethylationEPICannoilm10b2hg19 (parents: True, set_gid: False, sticky: False)
== 2021-05-12 02:30:02,597 run.py:226 INFO running cmd: tar xzf /user/brussel/101/vsc10122/.local/easybuild-skylake/sources/r/R-bundle-Bioconductor/extensions/IlluminaHumanMethylationEPICanno.ilm10b2.hg19_0.6.0.tar.gz 
== 2021-05-12 02:30:03,818 run.py:226 INFO running cmd:  R CMD INSTALL /theia/scratch/brussel/vo/000/bvo00005/vsc10122/easybuild/sl/build/RbundleBioconductor/3.12/foss-2020b-R-4.0.3/IlluminaHumanMethylationEPICannoilm10b2hg19/IlluminaHumanMethylationEPICanno.ilm10b2.hg19   --library=/user/brussel/101/vsc10122/.local/easybuild-skylake/software/R-bundle-Bioconductor/3.12-foss-2020b-R-4.0.3/ --no-clean-on-error  
== 2021-05-12 02:33:40,289 run.py:569 INFO cmd " R CMD INSTALL /theia/scratch/brussel/vo/000/bvo00005/vsc10122/easybuild/sl/build/RbundleBioconductor/3.12/foss-2020b-R-4.0.3/IlluminaHumanMethylationEPICannoilm10b2hg19/IlluminaHumanMethylationEPICanno.ilm10b2.hg19   --library=/user/brussel/101/vsc10122/.local/easybuild-skylake/software/R-bundle-Bioconductor/3.12-foss-2020b-R-4.0.3/ --no-clean-on-error " exited with exit code 0 and output:
* installing *source* package IlluminaHumanMethylationEPICanno.ilm10b2.hg19 ...
** using staged installation
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (IlluminaHumanMethylationEPICanno.ilm10b2.hg19)

== 2021-05-12 02:33:40,648 modules.py:606 INFO Checking whether foss/2020b exists...
== 2021-05-12 02:33:40,648 modules.py:614 INFO Module foss/2020b not found in list of available modules, checking via 'module show'...
== 2021-05-12 02:33:40,648 modules.py:634 INFO Result for existence check of foss/2020b module: True
== 2021-05-12 02:33:40,649 toolchain.py:756 INFO List of toolchain dependency modules and toolchain definition match!
== 2021-05-12 02:33:40,652 compiler.py:361 INFO _set_optimal_architecture: using march=native as optarch for x86_64.
== 2021-05-12 02:33:40,674 variables.py:201 WARNING flags_for_subdirs: directory /apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/include was not found
== 2021-05-12 02:33:40,680 environment.py:91 INFO Environment variable BLAS_INC_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include')
== 2021-05-12 02:33:40,680 environment.py:91 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include')
== 2021-05-12 02:33:40,681 environment.py:91 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include')
== 2021-05-12 02:33:40,681 environment.py:91 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include')
== 2021-05-12 02:33:40,681 environment.py:91 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib')
== 2021-05-12 02:33:40,681 environment.py:91 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib')
== 2021-05-12 02:33:40,681 environment.py:91 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libopenblas.a,libgfortran.a,libpthread.a')
== 2021-05-12 02:33:40,681 environment.py:91 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libopenblas.a,libgfortran.a,libpthread.a')
== 2021-05-12 02:33:40,681 environment.py:91 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2021-05-12 02:33:40,682 environment.py:91 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2021-05-12 02:33:40,682 environment.py:91 INFO Environment variable BLAS_LIB_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib')
== 2021-05-12 02:33:40,682 environment.py:91 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib')
== 2021-05-12 02:33:40,702 environment.py:91 INFO Environment variable BLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libopenblas.a,libgfortran.a,libpthread.a')
== 2021-05-12 02:33:40,702 environment.py:91 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libopenblas.a,libgfortran.a,libpthread.a')
== 2021-05-12 02:33:40,702 environment.py:91 INFO Environment variable BLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2021-05-12 02:33:40,702 environment.py:91 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2021-05-12 02:33:40,702 environment.py:91 INFO Environment variable CC set to gcc (previous value: 'gcc')
== 2021-05-12 02:33:40,702 environment.py:91 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc')
== 2021-05-12 02:33:40,702 environment.py:91 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:33:40,702 environment.py:91 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:33:40,702 environment.py:91 INFO Environment variable CPPFLAGS set to -I/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include -I/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include (previous value: '-I/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include -I/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include')
== 2021-05-12 02:33:40,702 environment.py:91 INFO Environment variable EBVARCPPFLAGS set to -I/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include -I/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include (previous value: '-I/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include -I/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include')
== 2021-05-12 02:33:40,703 environment.py:91 INFO Environment variable CXX set to g++ (previous value: 'g++')
== 2021-05-12 02:33:40,703 environment.py:91 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++')
== 2021-05-12 02:33:40,703 environment.py:91 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:33:40,703 environment.py:91 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:33:40,703 environment.py:91 INFO Environment variable F77 set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:33:40,703 environment.py:91 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:33:40,703 environment.py:91 INFO Environment variable F90 set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:33:40,703 environment.py:91 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:33:40,704 environment.py:91 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:33:40,704 environment.py:91 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:33:40,704 environment.py:91 INFO Environment variable FC set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:33:40,704 environment.py:91 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:33:40,704 environment.py:91 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:33:40,704 environment.py:91 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:33:40,704 environment.py:91 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:33:40,704 environment.py:91 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:33:40,705 environment.py:91 INFO Environment variable FFTW_INC_DIR set to /apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include (previous value: '/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include')
== 2021-05-12 02:33:40,705 environment.py:91 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include (previous value: '/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include')
== 2021-05-12 02:33:40,705 environment.py:91 INFO Environment variable FFTW_LIB_DIR set to /apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib (previous value: '/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib')
== 2021-05-12 02:33:40,705 environment.py:91 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib (previous value: '/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib')
== 2021-05-12 02:33:40,705 environment.py:91 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a')
== 2021-05-12 02:33:40,705 environment.py:91 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a')
== 2021-05-12 02:33:40,705 environment.py:91 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a')
== 2021-05-12 02:33:40,705 environment.py:91 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a')
== 2021-05-12 02:33:40,705 environment.py:91 INFO Environment variable FFT_INC_DIR set to /apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include (previous value: '/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include')
== 2021-05-12 02:33:40,705 environment.py:91 INFO Environment variable EBVARFFT_INC_DIR set to /apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include (previous value: '/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include')
== 2021-05-12 02:33:40,705 environment.py:91 INFO Environment variable FFT_LIB_DIR set to /apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib (previous value: '/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib')
== 2021-05-12 02:33:40,706 environment.py:91 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib (previous value: '/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib')
== 2021-05-12 02:33:40,706 environment.py:91 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a')
== 2021-05-12 02:33:40,706 environment.py:91 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a')
== 2021-05-12 02:33:40,706 environment.py:91 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a')
== 2021-05-12 02:33:40,706 environment.py:91 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a')
== 2021-05-12 02:33:40,706 environment.py:91 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran')
== 2021-05-12 02:33:40,707 environment.py:91 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran')
== 2021-05-12 02:33:40,707 environment.py:91 INFO Environment variable LAPACK_INC_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include')
== 2021-05-12 02:33:40,707 environment.py:91 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include')
== 2021-05-12 02:33:40,707 environment.py:91 INFO Environment variable LAPACK_LIB_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib')
== 2021-05-12 02:33:40,707 environment.py:91 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib')
== 2021-05-12 02:33:40,707 environment.py:91 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libopenblas.a,libgfortran.a,libpthread.a')
== 2021-05-12 02:33:40,707 environment.py:91 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libopenblas.a,libgfortran.a,libpthread.a')
== 2021-05-12 02:33:40,707 environment.py:91 INFO Environment variable LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2021-05-12 02:33:40,707 environment.py:91 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2021-05-12 02:33:40,708 environment.py:91 INFO Environment variable LDFLAGS set to -L/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib64 -L/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib -L/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib64 -L/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib -L/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib64 -L/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib -L/apps/brussel/CO7/skylake/software/GCCcore/10.2.0/lib64 -L/apps/brussel/CO7/skylake/software/GCCcore/10.2.0/lib (previous value: '-L/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib64 -L/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib -L/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib64 -L/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib -L/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib64 -L/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib -L/apps/brussel/CO7/skylake/software/GCCcore/10.2.0/lib64 -L/apps/brussel/CO7/skylake/software/GCCcore/10.2.0/lib')
== 2021-05-12 02:33:40,708 environment.py:91 INFO Environment variable EBVARLDFLAGS set to -L/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib64 -L/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib -L/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib64 -L/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib -L/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib64 -L/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib -L/apps/brussel/CO7/skylake/software/GCCcore/10.2.0/lib64 -L/apps/brussel/CO7/skylake/software/GCCcore/10.2.0/lib (previous value: '-L/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib64 -L/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib -L/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib64 -L/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib -L/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib64 -L/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib -L/apps/brussel/CO7/skylake/software/GCCcore/10.2.0/lib64 -L/apps/brussel/CO7/skylake/software/GCCcore/10.2.0/lib')
== 2021-05-12 02:33:40,708 environment.py:91 INFO Environment variable LIBBLAS set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2021-05-12 02:33:40,708 environment.py:91 INFO Environment variable EBVARLIBBLAS set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2021-05-12 02:33:40,709 environment.py:91 INFO Environment variable LIBBLAS_MT set to -lopenblas -lgfortran -lpthread (previous value: '-lopenblas -lgfortran -lpthread')
== 2021-05-12 02:33:40,709 environment.py:91 INFO Environment variable EBVARLIBBLAS_MT set to -lopenblas -lgfortran -lpthread (previous value: '-lopenblas -lgfortran -lpthread')
== 2021-05-12 02:33:40,709 environment.py:91 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3')
== 2021-05-12 02:33:40,709 environment.py:91 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3')
== 2021-05-12 02:33:40,709 environment.py:91 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread')
== 2021-05-12 02:33:40,709 environment.py:91 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread')
== 2021-05-12 02:33:40,709 environment.py:91 INFO Environment variable LIBLAPACK set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2021-05-12 02:33:40,709 environment.py:91 INFO Environment variable EBVARLIBLAPACK set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2021-05-12 02:33:40,709 environment.py:91 INFO Environment variable LIBLAPACK_MT set to -lopenblas -lgfortran -lpthread (previous value: '-lopenblas -lgfortran -lpthread')
== 2021-05-12 02:33:40,709 environment.py:91 INFO Environment variable EBVARLIBLAPACK_MT set to -lopenblas -lgfortran -lpthread (previous value: '-lopenblas -lgfortran -lpthread')
== 2021-05-12 02:33:40,709 environment.py:91 INFO Environment variable LIBLAPACK_MT_ONLY set to -lopenblas -lgfortran -lpthread (previous value: '-lopenblas -lgfortran -lpthread')
== 2021-05-12 02:33:40,710 environment.py:91 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lopenblas -lgfortran -lpthread (previous value: '-lopenblas -lgfortran -lpthread')
== 2021-05-12 02:33:40,710 environment.py:91 INFO Environment variable LIBLAPACK_ONLY set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2021-05-12 02:33:40,710 environment.py:91 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2021-05-12 02:33:40,710 environment.py:91 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread')
== 2021-05-12 02:33:40,710 environment.py:91 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread')
== 2021-05-12 02:33:40,710 environment.py:91 INFO Environment variable LIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previous value: '-lscalapack -lopenblas -lgfortran')
== 2021-05-12 02:33:40,710 environment.py:91 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previous value: '-lscalapack -lopenblas -lgfortran')
== 2021-05-12 02:33:40,710 environment.py:91 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lopenblas -lgfortran -lpthread (previous value: '-lscalapack -lopenblas -lgfortran -lpthread')
== 2021-05-12 02:33:40,711 environment.py:91 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lopenblas -lgfortran -lpthread (previous value: '-lscalapack -lopenblas -lgfortran -lpthread')
== 2021-05-12 02:33:40,711 environment.py:91 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran')
== 2021-05-12 02:33:40,711 environment.py:91 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran')
== 2021-05-12 02:33:40,711 environment.py:91 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran')
== 2021-05-12 02:33:40,711 environment.py:91 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran')
== 2021-05-12 02:33:40,711 environment.py:91 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc')
== 2021-05-12 02:33:40,711 environment.py:91 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc')
== 2021-05-12 02:33:40,712 environment.py:91 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx')
== 2021-05-12 02:33:40,712 environment.py:91 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx')
== 2021-05-12 02:33:40,712 environment.py:91 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort')
== 2021-05-12 02:33:40,712 environment.py:91 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort')
== 2021-05-12 02:33:40,712 environment.py:91 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort')
== 2021-05-12 02:33:40,712 environment.py:91 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort')
== 2021-05-12 02:33:40,712 environment.py:91 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort')
== 2021-05-12 02:33:40,712 environment.py:91 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort')
== 2021-05-12 02:33:40,712 environment.py:91 INFO Environment variable MPI_INC_DIR set to /apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/include (previous value: '/apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/include')
== 2021-05-12 02:33:40,712 environment.py:91 INFO Environment variable EBVARMPI_INC_DIR set to /apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/include (previous value: '/apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/include')
== 2021-05-12 02:33:40,712 environment.py:91 INFO Environment variable MPI_LIB_DIR set to /apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/lib64 (previous value: '/apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/lib64')
== 2021-05-12 02:33:40,713 environment.py:91 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/lib64 (previous value: '/apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/lib64')
== 2021-05-12 02:33:40,713 environment.py:91 INFO Environment variable MPI_LIB_SHARED set to /apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/lib64/libmpi.so (previous value: '/apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/lib64/libmpi.so')
== 2021-05-12 02:33:40,713 environment.py:91 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/lib64/libmpi.so (previous value: '/apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/lib64/libmpi.so')
== 2021-05-12 02:33:40,713 environment.py:91 INFO Environment variable MPI_LIB_STATIC set to  (previous value: '')
== 2021-05-12 02:33:40,713 environment.py:91 INFO Environment variable EBVARMPI_LIB_STATIC set to  (previous value: '')
== 2021-05-12 02:33:40,713 environment.py:91 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc')
== 2021-05-12 02:33:40,713 environment.py:91 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc')
== 2021-05-12 02:33:40,714 environment.py:91 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++')
== 2021-05-12 02:33:40,714 environment.py:91 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++')
== 2021-05-12 02:33:40,714 environment.py:91 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:33:40,714 environment.py:91 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:33:40,714 environment.py:91 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:33:40,714 environment.py:91 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:33:40,715 environment.py:91 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:33:40,715 environment.py:91 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:33:40,715 environment.py:91 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native')
== 2021-05-12 02:33:40,715 environment.py:91 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native')
== 2021-05-12 02:33:40,715 environment.py:91 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno')
== 2021-05-12 02:33:40,715 environment.py:91 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno')
== 2021-05-12 02:33:40,715 environment.py:91 INFO Environment variable SCALAPACK_INC_DIR set to  (previous value: '')
== 2021-05-12 02:33:40,715 environment.py:91 INFO Environment variable EBVARSCALAPACK_INC_DIR set to  (previous value: '')
== 2021-05-12 02:33:40,715 environment.py:91 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib (previous value: '/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib')
== 2021-05-12 02:33:40,715 environment.py:91 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib (previous value: '/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib')
== 2021-05-12 02:33:40,715 environment.py:91 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a')
== 2021-05-12 02:33:40,716 environment.py:91 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a')
== 2021-05-12 02:33:40,716 environment.py:91 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a')
== 2021-05-12 02:33:40,716 environment.py:91 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a')
== 2021-05-12 02:33:40,717 filetools.py:1728 INFO Creating directory /user/brussel/101/vsc10122/.local/easybuild-skylake/build/RbundleBioconductor/3.12/foss-2020b-R-4.0.3/IlluminaHumanMethylationEPICannoilm10b4hg19 (parents: True, set_gid: False, sticky: False)
== 2021-05-12 02:33:40,719 run.py:226 INFO running cmd: tar xzf /user/brussel/101/vsc10122/.local/easybuild-skylake/sources/r/R-bundle-Bioconductor/extensions/IlluminaHumanMethylationEPICanno.ilm10b4.hg19_0.6.0.tar.gz 
== 2021-05-12 02:33:42,047 run.py:226 INFO running cmd:  R CMD INSTALL /theia/scratch/brussel/vo/000/bvo00005/vsc10122/easybuild/sl/build/RbundleBioconductor/3.12/foss-2020b-R-4.0.3/IlluminaHumanMethylationEPICannoilm10b4hg19/IlluminaHumanMethylationEPICanno.ilm10b4.hg19   --library=/user/brussel/101/vsc10122/.local/easybuild-skylake/software/R-bundle-Bioconductor/3.12-foss-2020b-R-4.0.3/ --no-clean-on-error  
== 2021-05-12 02:37:17,399 run.py:569 INFO cmd " R CMD INSTALL /theia/scratch/brussel/vo/000/bvo00005/vsc10122/easybuild/sl/build/RbundleBioconductor/3.12/foss-2020b-R-4.0.3/IlluminaHumanMethylationEPICannoilm10b4hg19/IlluminaHumanMethylationEPICanno.ilm10b4.hg19   --library=/user/brussel/101/vsc10122/.local/easybuild-skylake/software/R-bundle-Bioconductor/3.12-foss-2020b-R-4.0.3/ --no-clean-on-error " exited with exit code 0 and output:
* installing *source* package IlluminaHumanMethylationEPICanno.ilm10b4.hg19 ...
** using staged installation
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (IlluminaHumanMethylationEPICanno.ilm10b4.hg19)

== 2021-05-12 02:37:17,758 modules.py:606 INFO Checking whether foss/2020b exists...
== 2021-05-12 02:37:17,758 modules.py:614 INFO Module foss/2020b not found in list of available modules, checking via 'module show'...
== 2021-05-12 02:37:17,759 modules.py:634 INFO Result for existence check of foss/2020b module: True
== 2021-05-12 02:37:17,760 toolchain.py:756 INFO List of toolchain dependency modules and toolchain definition match!
== 2021-05-12 02:37:17,764 compiler.py:361 INFO _set_optimal_architecture: using march=native as optarch for x86_64.
== 2021-05-12 02:37:17,783 variables.py:201 WARNING flags_for_subdirs: directory /apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/include was not found
== 2021-05-12 02:37:17,789 environment.py:91 INFO Environment variable BLAS_INC_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include')
== 2021-05-12 02:37:17,790 environment.py:91 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include')
== 2021-05-12 02:37:17,790 environment.py:91 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include')
== 2021-05-12 02:37:17,790 environment.py:91 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include')
== 2021-05-12 02:37:17,790 environment.py:91 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib')
== 2021-05-12 02:37:17,790 environment.py:91 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib')
== 2021-05-12 02:37:17,790 environment.py:91 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libopenblas.a,libgfortran.a,libpthread.a')
== 2021-05-12 02:37:17,790 environment.py:91 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libopenblas.a,libgfortran.a,libpthread.a')
== 2021-05-12 02:37:17,790 environment.py:91 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2021-05-12 02:37:17,790 environment.py:91 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2021-05-12 02:37:17,791 environment.py:91 INFO Environment variable BLAS_LIB_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib')
== 2021-05-12 02:37:17,791 environment.py:91 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib')
== 2021-05-12 02:37:17,791 environment.py:91 INFO Environment variable BLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libopenblas.a,libgfortran.a,libpthread.a')
== 2021-05-12 02:37:17,791 environment.py:91 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libopenblas.a,libgfortran.a,libpthread.a')
== 2021-05-12 02:37:17,791 environment.py:91 INFO Environment variable BLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2021-05-12 02:37:17,791 environment.py:91 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2021-05-12 02:37:17,791 environment.py:91 INFO Environment variable CC set to gcc (previous value: 'gcc')
== 2021-05-12 02:37:17,792 environment.py:91 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc')
== 2021-05-12 02:37:17,792 environment.py:91 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:37:17,792 environment.py:91 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:37:17,792 environment.py:91 INFO Environment variable CPPFLAGS set to -I/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include -I/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include (previous value: '-I/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include -I/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include')
== 2021-05-12 02:37:17,792 environment.py:91 INFO Environment variable EBVARCPPFLAGS set to -I/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include -I/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include (previous value: '-I/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include -I/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include')
== 2021-05-12 02:37:17,792 environment.py:91 INFO Environment variable CXX set to g++ (previous value: 'g++')
== 2021-05-12 02:37:17,792 environment.py:91 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++')
== 2021-05-12 02:37:17,792 environment.py:91 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:37:17,792 environment.py:91 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:37:17,792 environment.py:91 INFO Environment variable F77 set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:37:17,792 environment.py:91 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:37:17,792 environment.py:91 INFO Environment variable F90 set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:37:17,792 environment.py:91 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:37:17,793 environment.py:91 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:37:17,793 environment.py:91 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:37:17,793 environment.py:91 INFO Environment variable FC set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:37:17,793 environment.py:91 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:37:17,793 environment.py:91 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:37:17,793 environment.py:91 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:37:17,794 environment.py:91 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:37:17,794 environment.py:91 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previous value: '-O2 -ftree-vectorize -march=native -fno-math-errno')
== 2021-05-12 02:37:17,794 environment.py:91 INFO Environment variable FFTW_INC_DIR set to /apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include (previous value: '/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include')
== 2021-05-12 02:37:17,794 environment.py:91 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include (previous value: '/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include')
== 2021-05-12 02:37:17,794 environment.py:91 INFO Environment variable FFTW_LIB_DIR set to /apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib (previous value: '/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib')
== 2021-05-12 02:37:17,794 environment.py:91 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib (previous value: '/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib')
== 2021-05-12 02:37:17,794 environment.py:91 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a')
== 2021-05-12 02:37:17,794 environment.py:91 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a')
== 2021-05-12 02:37:17,794 environment.py:91 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a')
== 2021-05-12 02:37:17,794 environment.py:91 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a')
== 2021-05-12 02:37:17,794 environment.py:91 INFO Environment variable FFT_INC_DIR set to /apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include (previous value: '/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include')
== 2021-05-12 02:37:17,794 environment.py:91 INFO Environment variable EBVARFFT_INC_DIR set to /apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include (previous value: '/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/include')
== 2021-05-12 02:37:17,794 environment.py:91 INFO Environment variable FFT_LIB_DIR set to /apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib (previous value: '/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib')
== 2021-05-12 02:37:17,795 environment.py:91 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib (previous value: '/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib')
== 2021-05-12 02:37:17,795 environment.py:91 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a')
== 2021-05-12 02:37:17,795 environment.py:91 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a')
== 2021-05-12 02:37:17,795 environment.py:91 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a')
== 2021-05-12 02:37:17,795 environment.py:91 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a')
== 2021-05-12 02:37:17,795 environment.py:91 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran')
== 2021-05-12 02:37:17,795 environment.py:91 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran')
== 2021-05-12 02:37:17,795 environment.py:91 INFO Environment variable LAPACK_INC_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include')
== 2021-05-12 02:37:17,796 environment.py:91 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/include')
== 2021-05-12 02:37:17,796 environment.py:91 INFO Environment variable LAPACK_LIB_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib')
== 2021-05-12 02:37:17,796 environment.py:91 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib (previous value: '/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib')
== 2021-05-12 02:37:17,796 environment.py:91 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libopenblas.a,libgfortran.a,libpthread.a')
== 2021-05-12 02:37:17,796 environment.py:91 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libopenblas.a,libgfortran.a,libpthread.a')
== 2021-05-12 02:37:17,796 environment.py:91 INFO Environment variable LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2021-05-12 02:37:17,796 environment.py:91 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a')
== 2021-05-12 02:37:17,796 environment.py:91 INFO Environment variable LDFLAGS set to -L/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib64 -L/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib -L/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib64 -L/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib -L/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib64 -L/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib -L/apps/brussel/CO7/skylake/software/GCCcore/10.2.0/lib64 -L/apps/brussel/CO7/skylake/software/GCCcore/10.2.0/lib (previous value: '-L/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib64 -L/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib -L/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib64 -L/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib -L/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib64 -L/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib -L/apps/brussel/CO7/skylake/software/GCCcore/10.2.0/lib64 -L/apps/brussel/CO7/skylake/software/GCCcore/10.2.0/lib')
== 2021-05-12 02:37:17,796 environment.py:91 INFO Environment variable EBVARLDFLAGS set to -L/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib64 -L/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib -L/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib64 -L/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib -L/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib64 -L/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib -L/apps/brussel/CO7/skylake/software/GCCcore/10.2.0/lib64 -L/apps/brussel/CO7/skylake/software/GCCcore/10.2.0/lib (previous value: '-L/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib64 -L/apps/brussel/CO7/skylake/software/FFTW/3.3.8-gompi-2020b/lib -L/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib64 -L/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib -L/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib64 -L/apps/brussel/CO7/skylake/software/OpenBLAS/0.3.12-GCC-10.2.0/lib -L/apps/brussel/CO7/skylake/software/GCCcore/10.2.0/lib64 -L/apps/brussel/CO7/skylake/software/GCCcore/10.2.0/lib')
== 2021-05-12 02:37:17,797 environment.py:91 INFO Environment variable LIBBLAS set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2021-05-12 02:37:17,797 environment.py:91 INFO Environment variable EBVARLIBBLAS set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2021-05-12 02:37:17,797 environment.py:91 INFO Environment variable LIBBLAS_MT set to -lopenblas -lgfortran -lpthread (previous value: '-lopenblas -lgfortran -lpthread')
== 2021-05-12 02:37:17,797 environment.py:91 INFO Environment variable EBVARLIBBLAS_MT set to -lopenblas -lgfortran -lpthread (previous value: '-lopenblas -lgfortran -lpthread')
== 2021-05-12 02:37:17,797 environment.py:91 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3')
== 2021-05-12 02:37:17,797 environment.py:91 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3')
== 2021-05-12 02:37:17,797 environment.py:91 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread')
== 2021-05-12 02:37:17,797 environment.py:91 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread')
== 2021-05-12 02:37:17,797 environment.py:91 INFO Environment variable LIBLAPACK set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2021-05-12 02:37:17,798 environment.py:91 INFO Environment variable EBVARLIBLAPACK set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2021-05-12 02:37:17,798 environment.py:91 INFO Environment variable LIBLAPACK_MT set to -lopenblas -lgfortran -lpthread (previous value: '-lopenblas -lgfortran -lpthread')
== 2021-05-12 02:37:17,798 environment.py:91 INFO Environment variable EBVARLIBLAPACK_MT set to -lopenblas -lgfortran -lpthread (previous value: '-lopenblas -lgfortran -lpthread')
== 2021-05-12 02:37:17,798 environment.py:91 INFO Environment variable LIBLAPACK_MT_ONLY set to -lopenblas -lgfortran -lpthread (previous value: '-lopenblas -lgfortran -lpthread')
== 2021-05-12 02:37:17,798 environment.py:91 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lopenblas -lgfortran -lpthread (previous value: '-lopenblas -lgfortran -lpthread')
== 2021-05-12 02:37:17,798 environment.py:91 INFO Environment variable LIBLAPACK_ONLY set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2021-05-12 02:37:17,798 environment.py:91 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran')
== 2021-05-12 02:37:17,798 environment.py:91 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread')
== 2021-05-12 02:37:17,798 environment.py:91 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread')
== 2021-05-12 02:37:17,798 environment.py:91 INFO Environment variable LIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previous value: '-lscalapack -lopenblas -lgfortran')
== 2021-05-12 02:37:17,798 environment.py:91 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previous value: '-lscalapack -lopenblas -lgfortran')
== 2021-05-12 02:37:17,798 environment.py:91 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lopenblas -lgfortran -lpthread (previous value: '-lscalapack -lopenblas -lgfortran -lpthread')
== 2021-05-12 02:37:17,798 environment.py:91 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lopenblas -lgfortran -lpthread (previous value: '-lscalapack -lopenblas -lgfortran -lpthread')
== 2021-05-12 02:37:17,799 environment.py:91 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran')
== 2021-05-12 02:37:17,799 environment.py:91 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran')
== 2021-05-12 02:37:17,799 environment.py:91 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran')
== 2021-05-12 02:37:17,799 environment.py:91 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran')
== 2021-05-12 02:37:17,799 environment.py:91 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc')
== 2021-05-12 02:37:17,799 environment.py:91 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc')
== 2021-05-12 02:37:17,800 environment.py:91 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx')
== 2021-05-12 02:37:17,800 environment.py:91 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx')
== 2021-05-12 02:37:17,800 environment.py:91 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort')
== 2021-05-12 02:37:17,800 environment.py:91 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort')
== 2021-05-12 02:37:17,800 environment.py:91 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort')
== 2021-05-12 02:37:17,800 environment.py:91 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort')
== 2021-05-12 02:37:17,800 environment.py:91 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort')
== 2021-05-12 02:37:17,800 environment.py:91 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort')
== 2021-05-12 02:37:17,800 environment.py:91 INFO Environment variable MPI_INC_DIR set to /apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/include (previous value: '/apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/include')
== 2021-05-12 02:37:17,800 environment.py:91 INFO Environment variable EBVARMPI_INC_DIR set to /apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/include (previous value: '/apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/include')
== 2021-05-12 02:37:17,800 environment.py:91 INFO Environment variable MPI_LIB_DIR set to /apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/lib64 (previous value: '/apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/lib64')
== 2021-05-12 02:37:17,800 environment.py:91 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/lib64 (previous value: '/apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/lib64')
== 2021-05-12 02:37:17,800 environment.py:91 INFO Environment variable MPI_LIB_SHARED set to /apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/lib64/libmpi.so (previous value: '/apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/lib64/libmpi.so')
== 2021-05-12 02:37:17,801 environment.py:91 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/lib64/libmpi.so (previous value: '/apps/brussel/CO7/skylake/software/OpenMPI/4.0.5-GCC-10.2.0/lib64/libmpi.so')
== 2021-05-12 02:37:17,801 environment.py:91 INFO Environment variable MPI_LIB_STATIC set to  (previous value: '')
== 2021-05-12 02:37:17,801 environment.py:91 INFO Environment variable EBVARMPI_LIB_STATIC set to  (previous value: '')
== 2021-05-12 02:37:17,801 environment.py:91 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc')
== 2021-05-12 02:37:17,801 environment.py:91 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc')
== 2021-05-12 02:37:17,801 environment.py:91 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++')
== 2021-05-12 02:37:17,801 environment.py:91 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++')
== 2021-05-12 02:37:17,801 environment.py:91 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:37:17,801 environment.py:91 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:37:17,802 environment.py:91 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:37:17,802 environment.py:91 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:37:17,802 environment.py:91 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:37:17,802 environment.py:91 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran')
== 2021-05-12 02:37:17,802 environment.py:91 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native')
== 2021-05-12 02:37:17,802 environment.py:91 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previous value: '-O2 -ftree-vectorize -march=native')
== 2021-05-12 02:37:17,802 environment.py:91 INFO Environment variable PRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno')
== 2021-05-12 02:37:17,802 environment.py:91 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previous value: '-fno-math-errno')
== 2021-05-12 02:37:17,803 environment.py:91 INFO Environment variable SCALAPACK_INC_DIR set to  (previous value: '')
== 2021-05-12 02:37:17,803 environment.py:91 INFO Environment variable EBVARSCALAPACK_INC_DIR set to  (previous value: '')
== 2021-05-12 02:37:17,803 environment.py:91 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib (previous value: '/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib')
== 2021-05-12 02:37:17,803 environment.py:91 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib (previous value: '/apps/brussel/CO7/skylake/software/ScaLAPACK/2.1.0-gompi-2020b/lib')
== 2021-05-12 02:37:17,803 environment.py:91 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a')
== 2021-05-12 02:37:17,803 environment.py:91 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a')
== 2021-05-12 02:37:17,803 environment.py:91 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a')
== 2021-05-12 02:37:17,803 environment.py:91 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a')
== 2021-05-12 02:37:17,804 filetools.py:1728 INFO Creating directory /user/brussel/101/vsc10122/.local/easybuild-skylake/build/RbundleBioconductor/3.12/foss-2020b-R-4.0.3/conumee (parents: True, set_gid: False, sticky: False)
== 2021-05-12 02:37:17,806 run.py:226 INFO running cmd: tar xzf /user/brussel/101/vsc10122/.local/easybuild-skylake/sources/r/R-bundle-Bioconductor/extensions/conumee_1.24.0.tar.gz 
== 2021-05-12 02:37:17,961 run.py:226 INFO running cmd:  R CMD INSTALL /theia/scratch/brussel/vo/000/bvo00005/vsc10122/easybuild/sl/build/RbundleBioconductor/3.12/foss-2020b-R-4.0.3/conumee/conumee   --library=/user/brussel/101/vsc10122/.local/easybuild-skylake/software/R-bundle-Bioconductor/3.12-foss-2020b-R-4.0.3/ --no-clean-on-error  
== 2021-05-12 02:38:10,426 build_log.py:169 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:124 in __init__): cmd " R CMD INSTALL /theia/scratch/brussel/vo/000/bvo00005/vsc10122/easybuild/sl/build/RbundleBioconductor/3.12/foss-2020b-R-4.0.3/conumee/conumee   --library=/user/brussel/101/vsc10122/.local/easybuild-skylake/software/R-bundle-Bioconductor/3.12-foss-2020b-R-4.0.3/ --no-clean-on-error " exited with exit code 1 and output:
* installing *source* package conumee ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
sh: line 1:  3339 Killed                  R_TESTS= '/user/brussel/101/vsc10122/.local/easybuild-skylake/software/R/4.0.3-foss-2020b/lib64/R/bin/R' --no-save --no-restore --no-echo 2>&1 < '/user/brussel/101/vsc10122/.local/easybuild-skylake/tmp/eb-S60DbH/RtmpjfMv1K/filec7565034ebf'
ERROR: lazy loading failed for package conumee
 (at easybuild/tools/run.py:564 in parse_cmd_output)
== 2021-05-12 02:38:10,459 filetools.py:1829 INFO Removing lock /user/brussel/101/vsc10122/.local/easybuild-skylake/software/.locks/_user_brussel_101_vsc10122_.local_easybuild-skylake_software_R-bundle-Bioconductor_3.12-foss-2020b-R-4.0.3.lock...
== 2021-05-12 02:38:10,464 filetools.py:348 INFO Path /user/brussel/101/vsc10122/.local/easybuild-skylake/software/.locks/_user_brussel_101_vsc10122_.local_easybuild-skylake_software_R-bundle-Bioconductor_3.12-foss-2020b-R-4.0.3.lock successfully removed.
== 2021-05-12 02:38:10,464 filetools.py:1833 INFO Lock removed: /user/brussel/101/vsc10122/.local/easybuild-skylake/software/.locks/_user_brussel_101_vsc10122_.local_easybuild-skylake_software_R-bundle-Bioconductor_3.12-foss-2020b-R-4.0.3.lock
== 2021-05-12 02:38:10,464 easyblock.py:3427 WARNING build failed (first 300 chars): cmd " R CMD INSTALL /theia/scratch/brussel/vo/000/bvo00005/vsc10122/easybuild/sl/build/RbundleBioconductor/3.12/foss-2020b-R-4.0.3/conumee/conumee   --library=/user/brussel/101/vsc10122/.local/easybuild-skylake/software/R-bundle-Bioconductor/3.12-foss-2020b-R-4.0.3/ --no-clean-on-error " exited with
== 2021-05-12 02:38:10,464 easyblock.py:298 INFO Closing log for application name R-bundle-Bioconductor version 3.12