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bedroge/easybuild_test_report_11569_easybuilders_preasybuild-easyconfigs_20204823-UTC-15-48-18.md

Created October 23, 2020 15:48
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EasyBuild test report for easybuilders/easybuild-easyconfigs PR #11569
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easybuild_test_report_11569_easybuilders_preasybuild-easyconfigs_20204823-UTC-15-48-18.md

Test report for easybuilders/easybuild-easyconfigs#11569

Test result

Build succeeded for 1 out of 1 (1 easyconfigs in this PR)

Overview of tested easyconfigs (in order)

  • SUCCESS breseq-0.35.4-foss-2020a-R-4.0.0.eb

Time info

  • start: Fri, 23 Oct 2020 15:43:14 +0000 (UTC)
  • end: Fri, 23 Oct 2020 15:48:18 +0000 (UTC)

EasyBuild info

  • easybuild-framework version: 4.3.0
  • easybuild-easyblocks version: 4.3.0
  • command line:
eb --from-pr 11569 --rebuild --upload-test-report
  • full configuration (includes defaults):
--allow-loaded-modules='EasyBuild'
--buildpath='/local/tmp/f115261'
--check-ebroot-env-vars='warn'
--cleanup-builddir
--cleanup-easyconfigs
--cleanup-tmpdir
--color='auto'
--container-type='singularity'
--containerpath='/home/f115261/.local/easybuild/containers'
--default-opt-level='defaultopt'
--detect-loaded-modules='warn'
--disable-add-dummy-to-minimal-toolchains
--disable-add-system-to-minimal-toolchains
--disable-allow-modules-tool-mismatch
--disable-allow-use-as-root-and-accept-consequences
--disable-avail-cfgfile-constants
--disable-avail-easyconfig-constants
--disable-avail-easyconfig-licenses
--disable-avail-easyconfig-params
--disable-avail-easyconfig-templates
--disable-avail-hooks
--disable-avail-module-naming-schemes
--disable-avail-modules-tools
--disable-avail-repositories
--disable-check-conflicts
--disable-check-contrib
--disable-check-github
--disable-check-style
--disable-consider-archived-easyconfigs
--disable-container-build-image
--disable-containerize
--disable-copy-ec
--disable-debug
--disable-debug-lmod
--disable-devel
--disable-dry-run
--disable-dry-run-short
--disable-dump-autopep8
--disable-dump-env-script
--disable-enforce-checksums
--disable-experimental
--disable-extended-dry-run
--disable-fetch
--disable-fix-deprecated-easyconfigs
--disable-force
--disable-group-writable-installdir
--disable-hidden
--disable-ignore-checksums
--disable-ignore-index
--disable-ignore-locks
--disable-ignore-osdeps
--disable-info
--disable-install-github-token
--disable-install-latest-eb-release
--disable-job
--disable-last-log
--disable-list-toolchains
--disable-logtostdout
--disable-minimal-toolchains
--disable-missing-modules
--disable-module-depends-on
--disable-module-extensions
--disable-module-only
--disable-new-branch-github
--disable-new-pr
--disable-package
--disable-pretend
--disable-preview-pr
--disable-quiet
--disable-read-only-installdir
--disable-recursive-module-unload
--disable-regtest
--disable-remove-ghost-install-dirs
--disable-rpath
--disable-sequential
--disable-set-default-module
--disable-set-gid-bit
--disable-show-config
--disable-show-default-configfiles
--disable-show-default-moduleclasses
--disable-show-ec
--disable-show-full-config
--disable-show-system-info
--disable-skip
--disable-skip-test-cases
--disable-sticky-bit
--disable-terse
--disable-trace
--disable-try-ignore-versionsuffixes
--disable-try-update-deps
--disable-update-modules-tool-cache
--disable-use-existing-modules
--disable-verify-easyconfig-filenames
--extended-dry-run-ignore-errors
--fixed-installdir-naming-scheme
--from-pr='11569'
--generate-devel-module
--git-working-dirs-path='/home/f115250/easybuild/pullrequests'
--github-user='bedroge'
--hooks='/home/f115261/easybuild/cit-hpc-easybuild/hooks/hooks.py'
--ignore-dirs='.git,.svn'
--include-easyblocks=''
--include-module-naming-schemes=''
--include-toolchains=''
--index-max-age='604800'
--installpath='/software'
--job-backend='GC3Pie'
--job-max-jobs='0'
--job-max-walltime='24'
--job-output-dir='/home/f115261'
--job-polling-interval='30.0'
--lib64-fallback-sanity-check
--lib64-lib-symlink
--local-var-naming-check='warn'
--logfile-format='easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'
--map-toolchains
--max-fail-ratio-adjust-permissions='0.5'
--minimal-build-env='CC:gcc,CXX:g++'
--module-naming-scheme='EasyBuildMNS'
--module-syntax='Lua'
--moduleclasses='base,astro,bio,cae,chem,compiler,data,debugger,devel,geo,ide,lang,lib,math,mpi,numlib,perf,quantum,phys,system,toolchain,tools,vis'
--modules-tool-version-check
--modules-tool='Lmod'
--mpi-tests
--output-format='txt'
--package-naming-scheme='EasyBuildPNS'
--package-release='1'
--package-tool-options=''
--package-tool='fpm'
--package-type='rpm'
--packagepath='/home/f115261/.local/easybuild/packages'
--pr-target-account='easybuilders'
--pr-target-branch='develop'
--pre-create-installdir
--rebuild
--repository='FileRepository'
--repositorypath='/home/f115261/.local/easybuild/ebfiles_repo'
--robot-paths='/home/f115261/easybuild/cit-hpc-easybuild:/home/f115261/easybuild/easybuild-easyconfigs/easybuild/easyconfigs'
--sourcepath='/apps/.local/sources'
--strict='warn'
--subdir-modules='modules'
--subdir-software='software'
--suffix-modules-path='all'
--tmp-logdir='/local/tmp/f115261'
--tmpdir='/local/tmp/f115261'
--umask='002'
--upload-test-report
--use-ccache='False'
--use-f90cache='False'
--wait-on-lock-interval='60'
--wait-on-lock-limit='0'

System info

  • core count: 2
  • cpu arch: x86_64
  • cpu arch name: UNKNOWN
  • cpu model: Intel(R) Xeon(R) CPU E5-2660 0 @ 2.20GHz
  • cpu speed: 2200.0
  • cpu vendor: Intel
  • gcc version: Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/lto-wrapper; Target: x86_64-redhat-linux; Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux; Thread model: posix; gcc version 4.8.5 20150623 (Red Hat 4.8.5-16) (GCC) ;
  • glibc version: 2.17
  • hostname: build.hpc.rug.nl
  • os name: centos linux
  • os type: Linux
  • os version: 7.4.1708
  • platform name: x86_64-unknown-linux
  • python version: 2.7.5 (default, Aug 4 2017, 00:39:18) ; [GCC 4.8.5 20150623 (Red Hat 4.8.5-16)]
  • system gcc path: /usr/bin/gcc
  • system python path: /usr/bin/python
  • total memory: 3952

List of loaded modules

  • EasyBuild/4.3.0

Environment

BASH_ENV = /usr/share/lmod/lmod/init/bash
BASH_FUNC_ml() = () {  eval $($LMOD_DIR/ml_cmd "$@")
}
BASH_FUNC_module() = () {  eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh)
}
CMAKE_PREFIX_PATH = /software/software/EasyBuild/4.3.0
EBDEVELEASYBUILD = /software/software/EasyBuild/4.3.0/easybuild/EasyBuild-4.3.0-easybuild-devel
EBROOTEASYBUILD = /software/software/EasyBuild/4.3.0
EBVERSIONEASYBUILD = 4.3.0
EB_PYTHON = /usr/bin/python
EB_SCRIPT_PATH = /software/software/EasyBuild/4.3.0/bin/eb
FANCYLOGGER_IGNORE_MPI4PY = 1
HISTCONTROL = ignoredups
HISTSIZE = 1000
HOME = /home/f115261
HOSTNAME = build.hpc.rug.nl
KDEDIRS = /usr
LANG = en_US.UTF-8
LC_ADDRESS = nl_NL.UTF-8
LC_IDENTIFICATION = nl_NL.UTF-8
LC_MEASUREMENT = nl_NL.UTF-8
LC_MONETARY = nl_NL.UTF-8
LC_NAME = nl_NL.UTF-8
LC_NUMERIC = nl_NL.UTF-8
LC_PAPER = nl_NL.UTF-8
LC_TELEPHONE = nl_NL.UTF-8
LC_TIME = nl_NL.UTF-8
LESSOPEN = ||/usr/bin/lesspipe.sh %s
LMOD_ADMIN_FILE = /software/lmod/lmodadmin.txt
LMOD_CMD = /usr/share/lmod/lmod/libexec/lmod
LMOD_DIR = /usr/share/lmod/lmod/libexec
LMOD_PKG = /usr/share/lmod/lmod
LMOD_RC = /software/lmod/lmodrc.lua
LMOD_SETTARG_FULL_SUPPORT = no
LMOD_VERSION = 7.8.16
LMOD_sys = Linux
LOADEDMODULES = EasyBuild/4.3.0
LOGNAME = f115261
LS_COLORS = rs=0:di=38;5;27:ln=38;5;51:mh=44;38;5;15:pi=40;38;5;11:so=38;5;13:do=38;5;5:bd=48;5;232;38;5;11:cd=48;5;232;38;5;3:or=48;5;232;38;5;9:mi=05;48;5;232;38;5;15:su=48;5;196;38;5;15:sg=48;5;11;38;5;16:ca=48;5;196;38;5;226:tw=48;5;10;38;5;16:ow=48;5;10;38;5;21:st=48;5;21;38;5;15:ex=38;5;34:*.tar=38;5;9:*.tgz=38;5;9:*.arc=38;5;9:*.arj=38;5;9:*.taz=38;5;9:*.lha=38;5;9:*.lz4=38;5;9:*.lzh=38;5;9:*.lzma=38;5;9:*.tlz=38;5;9:*.txz=38;5;9:*.tzo=38;5;9:*.t7z=38;5;9:*.zip=38;5;9:*.z=38;5;9:*.Z=38;5;9:*.dz=38;5;9:*.gz=38;5;9:*.lrz=38;5;9:*.lz=38;5;9:*.lzo=38;5;9:*.xz=38;5;9:*.bz2=38;5;9:*.bz=38;5;9:*.tbz=38;5;9:*.tbz2=38;5;9:*.tz=38;5;9:*.deb=38;5;9:*.rpm=38;5;9:*.jar=38;5;9:*.war=38;5;9:*.ear=38;5;9:*.sar=38;5;9:*.rar=38;5;9:*.alz=38;5;9:*.ace=38;5;9:*.zoo=38;5;9:*.cpio=38;5;9:*.7z=38;5;9:*.rz=38;5;9:*.cab=38;5;9:*.jpg=38;5;13:*.jpeg=38;5;13:*.gif=38;5;13:*.bmp=38;5;13:*.pbm=38;5;13:*.pgm=38;5;13:*.ppm=38;5;13:*.tga=38;5;13:*.xbm=38;5;13:*.xpm=38;5;13:*.tif=38;5;13:*.tiff=38;5;13:*.png=38;5;13:*.svg=38;5;13:*.svgz=38;5;13:*.mng=38;5;13:*.pcx=38;5;13:*.mov=38;5;13:*.mpg=38;5;13:*.mpeg=38;5;13:*.m2v=38;5;13:*.mkv=38;5;13:*.webm=38;5;13:*.ogm=38;5;13:*.mp4=38;5;13:*.m4v=38;5;13:*.mp4v=38;5;13:*.vob=38;5;13:*.qt=38;5;13:*.nuv=38;5;13:*.wmv=38;5;13:*.asf=38;5;13:*.rm=38;5;13:*.rmvb=38;5;13:*.flc=38;5;13:*.avi=38;5;13:*.fli=38;5;13:*.flv=38;5;13:*.gl=38;5;13:*.dl=38;5;13:*.xcf=38;5;13:*.xwd=38;5;13:*.yuv=38;5;13:*.cgm=38;5;13:*.emf=38;5;13:*.axv=38;5;13:*.anx=38;5;13:*.ogv=38;5;13:*.ogx=38;5;13:*.aac=38;5;45:*.au=38;5;45:*.flac=38;5;45:*.mid=38;5;45:*.midi=38;5;45:*.mka=38;5;45:*.mp3=38;5;45:*.mpc=38;5;45:*.ogg=38;5;45:*.ra=38;5;45:*.wav=38;5;45:*.axa=38;5;45:*.oga=38;5;45:*.spx=38;5;45:*.xspf=38;5;45:
MAIL = /var/spool/mail/f115261
MANPATH = /usr/share/lmod/lmod/share/man:
MODULEPATH = /software/.local/easybuild/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core:/software/modules/bio:/software/modules/cae:/software/modules/chem:/software/modules/compiler:/software/modules/data:/software/modules/debugger:/software/modules/devel:/software/modules/gis:/software/modules/lang:/software/modules/lib:/software/modules/math:/software/modules/mpi:/software/modules/numlib:/software/modules/perf:/software/modules/phys:/software/modules/system:/software/modules/toolchain:/software/modules/tools:/software/modules/vis
MODULEPATH_ROOT = /usr/share/modulefiles
MODULESHOME = /usr/share/lmod/lmod
PATH = /software/software/EasyBuild/4.3.0/bin:/usr/lib64/qt-3.3/bin:/home/f115261/perl5/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/home/f115261/.local/bin:/home/f115261/bin
PERL5LIB = /home/f115261/perl5/lib/perl5:
PERL_LOCAL_LIB_ROOT = :/home/f115261/perl5
PERL_MB_OPT = --install_base /home/f115261/perl5
PERL_MM_OPT = INSTALL_BASE=/home/f115261/perl5
PWD = /home/f115261
PYTHONOPTIMIZE = 1
PYTHONPATH = /software/software/EasyBuild/4.3.0/lib/python2.7/site-packages
QTDIR = /usr/lib64/qt-3.3
QTINC = /usr/lib64/qt-3.3/include
QTLIB = /usr/lib64/qt-3.3/lib
QT_GRAPHICSSYSTEM_CHECKED = 1
QT_PLUGIN_PATH = /usr/lib64/kde4/plugins:/usr/lib/kde4/plugins
SHELL = /bin/bash
SHLVL = 2
SSH_CLIENT = 129.125.60.101 59548 22
SSH_CONNECTION = 129.125.60.101 59548 129.125.60.85 22
SSH_TTY = /dev/pts/0
TERM = xterm-256color
USER = f115261
_ = /usr/bin/python
_LMFILES_ = /software/modules/tools/EasyBuild/4.3.0.lua
_ModuleTable001_ = 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
_ModuleTable002_ = 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
_ModuleTable003_ = 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
_ModuleTable004_ = 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
_ModuleTable005_ = d2FyZS9tb2R1bGVzL3Rvb2xzOi9zb2Z0d2FyZS9tb2R1bGVzL3ZpcyIsfQ==
_ModuleTable_Sz_ = 5
__LMOD_REF_COUNT_CMAKE_PREFIX_PATH = /software/software/EasyBuild/4.3.0:1
__LMOD_REF_COUNT_LOADEDMODULES = EasyBuild/4.3.0:1
__LMOD_REF_COUNT_MODULEPATH = /software/.local/easybuild/modules/all:1;/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1;/software/modules/bio:1;/software/modules/cae:1;/software/modules/chem:1;/software/modules/compiler:1;/software/modules/data:1;/software/modules/debugger:1;/software/modules/devel:1;/software/modules/gis:1;/software/modules/lang:1;/software/modules/lib:1;/software/modules/math:1;/software/modules/mpi:1;/software/modules/numlib:1;/software/modules/perf:1;/software/modules/phys:1;/software/modules/system:1;/software/modules/toolchain:1;/software/modules/tools:1;/software/modules/vis:1
__LMOD_REF_COUNT_PATH = /software/software/EasyBuild/4.3.0/bin:1;/usr/lib64/qt-3.3/bin:1;/home/f115261/perl5/bin:1;/usr/local/bin:1;/usr/bin:1;/usr/local/sbin:1;/usr/sbin:1
__LMOD_REF_COUNT_PYTHONPATH = /software/software/EasyBuild/4.3.0/lib/python2.7/site-packages:1
__LMOD_REF_COUNT__LMFILES_ = /software/modules/tools/EasyBuild/4.3.0.lua:1
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