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Ryan Dale daler

311 followers · 28 following
  • National Institutes of Health (NIH), National Institute of Child Health and Human Development (NICHD)
  • Bethesda, MD
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daler / PWMSearch.py
Created March 23, 2011 13:55 — forked from JudoWill/PWMSearch.py
"""
PWMSearch
Searches through a fasta sequence for the relevant Position Weight Matrices
from the Jaspar Database.
"""
from __future__ import division
from optparse import OptionParser
@daler
daler / dnaa.sh
Created July 8, 2011 22:34 — forked from brentp/dnaa.sh
sudo apt-get install libtool
git clone git://dnaa.git.sourceforge.net/gitroot/dnaa/dnaa dnaa-git
cd dnaa-git
# bfast required. see above gist
cp -r ../bfast-git ./bfast
# samtools require. see above gist.
cp -r ../samtools-svn/ ./samtools
sh autogen.sh && ./configure && make && sudo make install
@daler
daler / genome-minimal-fail.gff
Created January 22, 2015 15:45 — forked from rmzelle/genome-minimal-fail.gff
##gff-version 3
scaffold_28 prediction gene 1 402 0 + . ID=545184;Name=545184
scaffold_28 prediction gene 805 981 0 - . ID=93782;Name=93782
scaffold_28 prediction gene 2030 2721 0 + . ID=545205;Name=545205
scaffold_28 prediction gene 3273 3545 0 - . Name=YOL159C-A;Synteny=no_synteny;SystematicGeneName=YOL159C-A;ID=38792
scaffold_28 prediction gene 5318 5833 0 - . Name=YOL159C;Synteny=no_synteny;SystematicGeneName=YOL159C;ID=38793
scaffold_28 prediction gene 6780 8600 0 - . Name=ENB1;Synteny=no_synteny;SystematicGeneName=YOL158C;StandardGeneName=ENB1;ID=38794
scaffold_28 prediction gene 9698 11467 0 - . Name=IMA4;Synteny=no_synteny;SystematicGeneName=YJL221C;StandardGeneName=IMA4;ID=38795