danielmk

# -*- coding: utf-8 -*-
"""
Uses python with NEURON to simulate voltage clamping a ball-and-stick cell.

Tested in Python 3.7.3 and NEURON 7.6.7

Author: @scidanm
"""

from neuron import h, gui

danielmk

# -*- coding: utf-8 -*-
"""
Python implementation of a Hodgkin-Huxley model of a cortical pyramidal neuron.

Code taken in large parts from https://gist.github.com/giuseppebonaccorso/60ce3eb3a829b94abf64ab2b7a56aaef
Adapted to work with solve_ivp.
Parameters changed to a cortical pyramidal neuron as described in https://neuronaldynamics.epfl.ch/online/Ch2.S2.html

Tested in Python 3.7.3

danielmk

# -*- coding: utf-8 -*-
"""
A Python implementation of the Izhikevich Neuron as described in Izhikevich E.M. (2003)

Tested in Python 3.7.3

Author: @scidanm
"""

import numpy as np

danielmk

# -*- coding: utf-8 -*-
"""
A two dimensional dynamic system with leak current, persistent sodium current
and transient potassium current. Exhibits spiking behavior and some other cool
stuff. The equations and their paremeters come from "Dynamical Systems in
Neuroscience: The Geometry of Excitability and Bursting" by Izhikevich,
Eugene M. There it says: "This model is equivalent in many respects to the
well-known and widely used ICa+Ik-model proposed by Morris and Lecar (1981)
to describe voltage oscillations in the barnacle giant muscle fiber." (p.89)