GENE 760 – Problem Set 3
The purpose of this problem set is to familiarize students with the analysis of mRNA-seq data. By the end of this problem set, you will have learned how to use:
- STAR to map spliced RNA-seq reads to a genome
- HTSeq to quantify gene expression as read counts
- DESeq2 to perform differential expression analysis
- DAVID and EnrichR to perform gene ontology analysis on a list of genes
Students are to submit a gzipped tarball called _PS3.tar.gz
containing: