dimitri-justeau

"""
Convert a linked taxonomy csv file to a flattened taxonomy csv file.
"""

import pandas as pd


def get_flattened_taxonomy(linked_taxonomy, parent_col="id_parent", rank_names_or_prefix="rank", include_rank=True, drop_parent_col=True):
    """
    Converts a linked taxonomy DataFrame (i.e. where nodes in the taxonomic tree are only linked through their parent) to a flattened

dimitri-justeau

"""
Convert a flattened taxonomy csv file to a linked taxonomy csv file.
"""

import pandas as pd


def get_linked_taxonomy(flat_taxonomy, rank_cols, parent_id_col="id_parent", drop_rank_cols=True):
    """
    Converts a flat taxonomy DataFrame (i.e. where every taxonomic rank from the root parent of each taxa is explicitly stored) to a linked

dimitri-justeau

import org.chocosolver.solver.Model;
import org.chocosolver.solver.Solver;
import org.chocosolver.solver.variables.IntVar;

import java.util.stream.IntStream;

/**
 * CP Model for enumerating paths in a graph from start_node to end_node, with a cost constraint.
 * Costs are on the arcs.
 *

dimitri-justeau

package org.chocosolver.graphsolver.cstrs.connectivity;


import org.chocosolver.graphsolver.util.ConnectivityFinder;
import org.chocosolver.graphsolver.variables.GraphEventType;
import org.chocosolver.graphsolver.variables.UndirectedGraphVar;
import org.chocosolver.solver.constraints.Propagator;
import org.chocosolver.solver.constraints.PropagatorPriority;
import org.chocosolver.solver.exception.ContradictionException;
import org.chocosolver.solver.variables.Variable;

dimitri-justeau

# coding: utf-8

import os
import math

import geopandas as gpd
import rasterio
import rasterio.features
from affine import Affine