dkirkby

def get_contour_levels(data, nsigmas=(2,1)):
    
    assert data.ndim == 2
    assert np.all(data >= 0)
    assert np.sum(data) <= 1 + 1e-6
    assert np.all(np.asarray(nsigmas) > 0)
    assert np.all(np.diff(nsigmas) < 0)
    
    # Convert sigmas to confidence levels
    CL = scipy.stats.chi2.cdf(x=np.asarray(nsigmas) ** 2, df=1)

dkirkby

find . -name "*.ipynb" -not -path "*checkpoint*" -print0 | xargs -0 fgrep -l coordinates

dkirkby

# https://developer.apple.com/metal/jax/

conda create -n apple-ml python=3.10 pip ipython jupyter jupyterlab ipykernel numpy wheel scipy pandas matplotlib
conda activate apple-ml
python -m pip install ml-dtypes==0.2.0 jax-metal
# Successfully installed jax-0.4.11 jax-metal-0.0.4 jaxlib-0.4.11 ml-dtypes-0.2.0 opt-einsum-3.3.0

## This installs a newer version of jaxlib that is incompatible with jax-metal ??
##python -m pip install -q -U flax

dkirkby

# exclude directories with specific names
find . -type d \( -name 'code' -o -name '.ipynb_checkpoints' \) -prune -o -name '*.ipynb' -type f -exec fgrep 'desietc' {} +

dkirkby

# Need to convert from big-endian to little-endian to avoid this error:
# ValueError: Big-endian buffer not supported on little-endian compiler
data = fitsio.read(path).byteswap().newbyteorder()
df = pd.DataFrame(data)

dkirkby

• Update version in setup.cfg, usually by remove .dev
• Check that CHANGES.rst describes all changes since the last version
• Replace unreleased with today's YYYY-MM-DD in CHANGES.rst
• Commit and tag

git add .
git commit -m 'prepare for release'
git tag v0.15

• Bump version in setup.cfg and append .dev

dkirkby

# https://docs.github.com/en/github/authenticating-to-github/troubleshooting-ssh
# https://selleo.com/til/posts/m8eirl36cu-debugging-git-pushssh-hanging

% cat ~/bin/sshverbose.sh
#!/bin/bash
ssh -vvv "$@"

% GIT_SSH=~/bin/sshverbose.sh git pull

dkirkby

My minimal git config:

[user]
	name = David Kirkby
	email = dkirkby@uci.edu
[alias]
	ls = log --graph --pretty=format:'%C(blue)%h%Creset%C(red bold)%d%Creset %C(black)%s%Creset %C(green)(by %an %ar)%Creset' --all

This should normally be in ~/.gitconfig but if using a shared account (at KPNO for example), put it somewhere else then set GIT_CONFIG in your shell env to point to it.

dkirkby

# Put this anywhere within the package then call it at runtime to get a git description
# of the package version being used.  This only works when the package is being imported
# from a directory checked out directly from github, which is generally not the case
# for pip- or conda-installed packages.

def git_describe():
    """Return a string describing the git origin of the package where this function is defined.

    The result is usually <tag>-<n>-g<hash> where <tag> is the last tag, <n> is the number of
    subsequent commits, and <hash> is the current git hash.  When n=0, only <hash> is returned.

dkirkby

import struct

def decode_float(x):
    """Decode the fields of an IEEE 754 single or double precision float:
    https://en.wikipedia.org/wiki/Single-precision_floating-point_format
    https://en.wikipedia.org/wiki/Double-precision_floating-point_format
    """
    if isinstance(x, np.floating):
        bits = np.finfo(x.dtype).bits
        assert bits in (32, 64), f'Unsupported numpy floating dtype: {type(x)}.'