dondelelcaro

Keybase proof

I hereby claim:

• I am dondelelcaro on github.
• I am dondelelcaro (https://keybase.io/dondelelcaro) on keybase.
• I have a public key whose fingerprint is 2AD8 65BA 2604 0F67 F9CC 3660 A2D1 3001 D98C 0FBA

To claim this, I am signing this object:

dondelelcaro

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dondelelcaro

Apr-24 19:07:27.835 [main] DEBUG nextflow.cli.Launcher - $> /home/a-m/donarm/nextflow/nextflow impute2.nf --map ../raw_data/dnhs_flipped_fixed.map --ped ../raw_data/dnhs_flipped_fixed.ped --refdir /home/a-m/donarm/sanger_data/ -process.executor slurm -resume
Apr-24 19:07:27.980 [main] INFO  nextflow.cli.CmdRun - N E X T F L O W  ~  version 0.24.3
Apr-24 19:07:27.990 [main] INFO  nextflow.cli.CmdRun - Launching `impute2.nf` [determined_payne] - revision: 57acc82dd1
Apr-24 19:07:28.230 [main] DEBUG nextflow.Session - Session uuid: 5072cf37-f100-4bc1-83c6-aef9650d59ad
Apr-24 19:07:28.231 [main] DEBUG nextflow.Session - Run name: determined_payne
Apr-24 19:07:28.232 [main] DEBUG nextflow.Session - Executor pool size: 16
Apr-24 19:07:28.242 [main] DEBUG nextflow.cli.CmdRun - 
  Version: 0.24.3 build 4316
  Modified: 24-04-2017 14:55 UTC (09:55 CDT)
  System: Linux 3.10.0-514.6.1.el7.x86_64

dondelelcaro

#!/bin/sh

case "$1" in
    *.bam)
        samtools view $LESSPIPE_SAMTOOLS "$1"
        ;;
    *)
        # We don't handle this format.
        exit 1
esac