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douglase/bokeh_test.ipynb

Created September 14, 2016 12:48
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bokeh_test.ipynb
{
"cells": [
{
"cell_type": "code",
"execution_count": 2,
"metadata": {
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},
"outputs": [
{
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"\n",
" <div class=\"bk-root\">\n",
" <a href=\"http://bokeh.pydata.org\" target=\"_blank\" class=\"bk-logo bk-logo-small bk-logo-notebook\"></a>\n",
" <span id=\"54fa4f48-8f6e-4be1-81b7-717283abb085\">Loading BokehJS ...</span>\n",
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" }\n",
"\n",
" var NB_LOAD_WARNING = {'data': {'text/html':\n",
" \"<div style='background-color: #fdd'>\\n\"+\n",
" \"<p>\\n\"+\n",
" \"BokehJS does not appear to have successfully loaded. If loading BokehJS from CDN, this \\n\"+\n",
" \"may be due to a slow or bad network connection. Possible fixes:\\n\"+\n",
" \"</p>\\n\"+\n",
" \"<ul>\\n\"+\n",
" \"<li>re-rerun `output_notebook()` to attempt to load from CDN again, or</li>\\n\"+\n",
" \"<li>use INLINE resources instead, as so:</li>\\n\"+\n",
" \"</ul>\\n\"+\n",
" \"<code>\\n\"+\n",
" \"from bokeh.resources import INLINE\\n\"+\n",
" \"output_notebook(resources=INLINE)\\n\"+\n",
" \"</code>\\n\"+\n",
" \"</div>\"}};\n",
"\n",
" function display_loaded() {\n",
" if (window.Bokeh !== undefined) {\n",
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" delete window._bokeh_onload_callbacks\n",
" console.info(\"Bokeh: all callbacks have finished\");\n",
" }\n",
"\n",
" function load_libs(js_urls, callback) {\n",
" window._bokeh_onload_callbacks.push(callback);\n",
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" console.log(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n",
" window._bokeh_is_loading = js_urls.length;\n",
" for (var i = 0; i < js_urls.length; i++) {\n",
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" function(Bokeh) {\n",
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" \n",
" Bokeh.$(\"#54fa4f48-8f6e-4be1-81b7-717283abb085\").text(\"BokehJS is loading...\");\n",
" },\n",
" function(Bokeh) {\n",
" console.log(\"Bokeh: injecting CSS: https://cdn.pydata.org/bokeh/release/bokeh-0.12.2.min.css\");\n",
" Bokeh.embed.inject_css(\"https://cdn.pydata.org/bokeh/release/bokeh-0.12.2.min.css\");\n",
" console.log(\"Bokeh: injecting CSS: https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.12.2.min.css\");\n",
" Bokeh.embed.inject_css(\"https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.12.2.min.css\");\n",
" }\n",
" ];\n",
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" console.log(\"Bokeh: BokehJS plotting callback run at\", now());\n",
" run_inline_js();\n",
" });\n",
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"}(this));"
]
},
"metadata": {},
"output_type": "display_data"
}
],
"source": [
"import bokeh.plotting\n",
"bokeh.plotting.output_notebook()"
]
},
{
"cell_type": "code",
"execution_count": 10,
"metadata": {
"collapsed": false
},
"outputs": [
{
"name": "stderr",
"output_type": "stream",
"text": [
"WARNING: W22: ../EXOSIMS/EXOSIMS/StarCatalog/mission_exocat.votable:5:0: W22: The DEFINITIONS element is deprecated in VOTable 1.1. Ignoring [astropy.io.votable.tree]\n",
"WARNING: W27: ../EXOSIMS/EXOSIMS/StarCatalog/mission_exocat.votable:6:0: W27: COOSYS deprecated in VOTable 1.2 [astropy.io.votable.tree]\n",
"WARNING: W06: ../EXOSIMS/EXOSIMS/StarCatalog/mission_exocat.votable:25:0: W06: Invalid UCD 'POS_EQ_RA_MAIN': Unknown word 'POS_EQ_RA_MAIN' [astropy.io.votable.tree]\n",
"WARNING: W06: ../EXOSIMS/EXOSIMS/StarCatalog/mission_exocat.votable:26:0: W06: Invalid UCD 'POS_EQ_DEC_MAIN': Unknown word 'POS_EQ_DEC_MAIN' [astropy.io.votable.tree]\n",
"WARNING: W50: ../EXOSIMS/EXOSIMS/StarCatalog/mission_exocat.votable:30:0: W50: Invalid unit string 'mags' [astropy.io.votable.tree]\n",
"WARNING: W50: ../EXOSIMS/EXOSIMS/StarCatalog/mission_exocat.votable:31:0: W50: Invalid unit string 'mags' [astropy.io.votable.tree]\n",
"WARNING: W50: ../EXOSIMS/EXOSIMS/StarCatalog/mission_exocat.votable:33:0: W50: Invalid unit string 'mags' [astropy.io.votable.tree]\n",
"WARNING: W50: ../EXOSIMS/EXOSIMS/StarCatalog/mission_exocat.votable:34:0: W50: Invalid unit string 'mags' [astropy.io.votable.tree]\n",
"WARNING: W50: ../EXOSIMS/EXOSIMS/StarCatalog/mission_exocat.votable:42:0: W50: Invalid unit string 'mags' [astropy.io.votable.tree]\n",
"WARNING: W50: ../EXOSIMS/EXOSIMS/StarCatalog/mission_exocat.votable:48:0: W50: Invalid unit string 'degrees' [astropy.io.votable.tree]\n",
"WARNING: W50: ../EXOSIMS/EXOSIMS/StarCatalog/mission_exocat.votable:49:0: W50: Invalid unit string 'degrees' [astropy.io.votable.tree]\n",
"WARNING: W50: ../EXOSIMS/EXOSIMS/StarCatalog/mission_exocat.votable:50:0: W50: Invalid unit string 'mags' [astropy.io.votable.tree]\n",
"WARNING: W50: ../EXOSIMS/EXOSIMS/StarCatalog/mission_exocat.votable:51:0: W50: Invalid unit string 'mags' [astropy.io.votable.tree]\n",
"WARNING: W50: ../EXOSIMS/EXOSIMS/StarCatalog/mission_exocat.votable:53:0: W50: Invalid unit string 'mags' (suppressing further warnings of this type...) [astropy.io.votable.tree]\n",
"WARNING: W06: ../EXOSIMS/EXOSIMS/StarCatalog/mission_exocat.votable:123:0: W06: Invalid UCD 'ID_MAIN': Unknown word 'ID_MAIN' [astropy.io.votable.tree]\n",
"WARNING: W22: ../EXOSIMS/EXOSIMS/PlanetPopulation/RVplanets_ipac_032216.votable:5:0: W22: The DEFINITIONS element is deprecated in VOTable 1.1. Ignoring [astropy.io.votable.tree]\n",
"WARNING: W27: ../EXOSIMS/EXOSIMS/PlanetPopulation/RVplanets_ipac_032216.votable:6:0: W27: COOSYS deprecated in VOTable 1.2 [astropy.io.votable.tree]\n",
"WARNING: W50: ../EXOSIMS/EXOSIMS/PlanetPopulation/RVplanets_ipac_032216.votable:16:0: W50: Invalid unit string 'days' [astropy.io.votable.tree]\n",
"WARNING: W50: ../EXOSIMS/EXOSIMS/PlanetPopulation/RVplanets_ipac_032216.votable:17:0: W50: Invalid unit string 'days' [astropy.io.votable.tree]\n",
"WARNING: W50: ../EXOSIMS/EXOSIMS/PlanetPopulation/RVplanets_ipac_032216.votable:18:0: W50: Invalid unit string 'days' [astropy.io.votable.tree]\n",
"WARNING: W50: ../EXOSIMS/EXOSIMS/PlanetPopulation/RVplanets_ipac_032216.votable:28:0: W50: Invalid unit string 'degrees' [astropy.io.votable.tree]\n",
"WARNING: W50: ../EXOSIMS/EXOSIMS/PlanetPopulation/RVplanets_ipac_032216.votable:29:0: W50: Invalid unit string 'degrees' [astropy.io.votable.tree]\n",
"WARNING: W50: ../EXOSIMS/EXOSIMS/PlanetPopulation/RVplanets_ipac_032216.votable:30:0: W50: Invalid unit string 'degrees' [astropy.io.votable.tree]\n",
"WARNING: W50: ../EXOSIMS/EXOSIMS/PlanetPopulation/RVplanets_ipac_032216.votable:41:0: W50: Invalid unit string 'g/cm**3' [astropy.io.votable.tree]\n",
"WARNING: W50: ../EXOSIMS/EXOSIMS/PlanetPopulation/RVplanets_ipac_032216.votable:42:0: W50: Invalid unit string 'g/cm**3' [astropy.io.votable.tree]\n",
"WARNING: W50: ../EXOSIMS/EXOSIMS/PlanetPopulation/RVplanets_ipac_032216.votable:43:0: W50: Invalid unit string 'g/cm**3' [astropy.io.votable.tree]\n",
"WARNING: W06: ../EXOSIMS/EXOSIMS/PlanetPopulation/RVplanets_ipac_032216.votable:50:0: W06: Invalid UCD 'POS_EQ_RA_MAIN': Unknown word 'POS_EQ_RA_MAIN' [astropy.io.votable.tree]\n",
"WARNING: W06: ../EXOSIMS/EXOSIMS/PlanetPopulation/RVplanets_ipac_032216.votable:52:0: W06: Invalid UCD 'POS_EQ_DEC_MAIN': Unknown word 'POS_EQ_DEC_MAIN' [astropy.io.votable.tree]\n",
"WARNING: W50: ../EXOSIMS/EXOSIMS/PlanetPopulation/RVplanets_ipac_032216.votable:57:0: W50: Invalid unit string 'mags' (suppressing further warnings of this type...) [astropy.io.votable.tree]\n",
"WARNING: W06: ../EXOSIMS/EXOSIMS/PlanetPopulation/RVplanets_ipac_032216.votable:391:0: W06: Invalid UCD 'ID_MAIN': Unknown word 'ID_MAIN' [astropy.io.votable.tree]\n"
]
}
],
"source": [
"import astropy.io.votable as votab\n",
"\n",
"import numpy as np\n",
"\n",
"exocat=votab.parse(\"../EXOSIMS/EXOSIMS/StarCatalog/mission_exocat.votable\").get_first_table().to_table()\n",
"knownRV=votab.parse(\"../EXOSIMS/EXOSIMS/PlanetPopulation/RVplanets_ipac_032216.votable\").get_first_table().to_table()\n",
"\n",
"\n",
"exocat_df=exocat.to_pandas()"
]
},
{
"cell_type": "code",
"execution_count": 78,
"metadata": {
"collapsed": false
},
"outputs": [
{
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" \n",
" Bokeh.embed.embed_items(docs_json, render_items);\n",
" });\n",
" },\n",
" function(Bokeh) {\n",
" }\n",
" ];\n",
" \n",
" function run_inline_js() {\n",
" \n",
" if ((window.Bokeh !== undefined) || (force === \"1\")) {\n",
" for (var i = 0; i < inline_js.length; i++) {\n",
" inline_js[i](window.Bokeh);\n",
" }if (force === \"1\") {\n",
" display_loaded();\n",
" }} else if (Date.now() < window._bokeh_timeout) {\n",
" setTimeout(run_inline_js, 100);\n",
" } else if (!window._bokeh_failed_load) {\n",
" console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n",
" window._bokeh_failed_load = true;\n",
" } else if (!force) {\n",
" var cell = $(\"#4c3d9ebf-a0b0-4b11-8b06-39619675d211\").parents('.cell').data().cell;\n",
" cell.output_area.append_execute_result(NB_LOAD_WARNING)\n",
" }\n",
" \n",
" }\n",
" \n",
" if (window._bokeh_is_loading === 0) {\n",
" console.log(\"Bokeh: BokehJS loaded, going straight to plotting\");\n",
" run_inline_js();\n",
" } else {\n",
" load_libs(js_urls, function() {\n",
" console.log(\"Bokeh: BokehJS plotting callback run at\", now());\n",
" run_inline_js();\n",
" });\n",
" }\n",
" }(this));\n",
"</script>"
]
},
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}
],
"source": [
"\n",
"TOOLS=\"hover,crosshair,pan,wheel_zoom,box_zoom,undo,redo,reset,tap,save,box_select,poly_select,lasso_select\"\n",
"\n",
"p = bokeh.plotting.figure(tools=TOOLS)\n",
"\n",
"p.scatter(exocat['st_teff'], (exocat['st_mass']), radius=50,\n",
" fill_color='gray', fill_alpha=0.5,legend=\"ExoCat\",\n",
" line_color=None)\n",
"\n",
"p.scatter(knownRV['st_teff'], (knownRV[\"st_mass\"]), radius=100,\n",
"fill_color=\"orange\", fill_alpha=0.1,legend=\"Known RV\",\n",
" line_color=None)\n",
"p.xaxis.axis_label = \"T [K]\"\n",
"p.yaxis.axis_label = \"Mass [M_sun]\"\n",
"bokeh.plotting.show(p)\n"
]
},
{
"cell_type": "code",
"execution_count": 71,
"metadata": {
"collapsed": false
},
"outputs": [
{
"data": {
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" \n",
" var NB_LOAD_WARNING = {'data': {'text/html':\n",
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" \"<p>\\n\"+\n",
" \"BokehJS does not appear to have successfully loaded. If loading BokehJS from CDN, this \\n\"+\n",
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Application\",\"version\":\"0.12.2\"}};\n",
" var render_items = [{\"docid\":\"3b73481f-a364-413b-b8a9-62ca0d1f06ec\",\"elementid\":\"3b332e21-48fc-4f44-8fee-2f1966c67bb5\",\"modelid\":\"4822541d-b0ca-426e-958b-e9f9f1927159\"}];\n",
" \n",
" Bokeh.embed.embed_items(docs_json, render_items);\n",
" });\n",
" },\n",
" function(Bokeh) {\n",
" }\n",
" ];\n",
" \n",
" function run_inline_js() {\n",
" \n",
" if ((window.Bokeh !== undefined) || (force === \"1\")) {\n",
" for (var i = 0; i < inline_js.length; i++) {\n",
" inline_js[i](window.Bokeh);\n",
" }if (force === \"1\") {\n",
" display_loaded();\n",
" }} else if (Date.now() < window._bokeh_timeout) {\n",
" setTimeout(run_inline_js, 100);\n",
" } else if (!window._bokeh_failed_load) {\n",
" console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n",
" window._bokeh_failed_load = true;\n",
" } else if (!force) {\n",
" var cell = $(\"#3b332e21-48fc-4f44-8fee-2f1966c67bb5\").parents('.cell').data().cell;\n",
" cell.output_area.append_execute_result(NB_LOAD_WARNING)\n",
" }\n",
" \n",
" }\n",
" \n",
" if (window._bokeh_is_loading === 0) {\n",
" console.log(\"Bokeh: BokehJS loaded, going straight to plotting\");\n",
" run_inline_js();\n",
" } else {\n",
" load_libs(js_urls, function() {\n",
" console.log(\"Bokeh: BokehJS plotting callback run at\", now());\n",
" run_inline_js();\n",
" });\n",
" }\n",
" }(this));\n",
"</script>"
]
},
"metadata": {},
"output_type": "display_data"
}
],
"source": [
"p = bokeh.plotting.figure(tools=TOOLS, x_range=(0, 10000), y_range=(-5, 35) )\n",
"\n",
"\n",
"p.scatter(exocat['st_teff'], (exocat['st_dist']), radius=50,\n",
" fill_color='gray', fill_alpha=0.2,legend=\"ExoCat\",\n",
" line_color=None)\n",
"\n",
"p.scatter(knownRV['st_teff'], (knownRV[\"st_dist\"]), radius=100,\n",
"fill_color=\"blue\", fill_alpha=0.2,legend=\"Known RV\",\n",
" line_color=None)\n",
"p.xaxis.axis_label = \"T [K]\"\n",
"p.yaxis.axis_label = \"distance [pc]\"\n",
"bokeh.plotting.show(p)\n",
"\n"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": []
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"\n"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": []
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": []
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": true
},
"outputs": [],
"source": []
}
],
"metadata": {
"anaconda-cloud": {},
"kernelspec": {
"display_name": "Python [conda env:wfirst]",
"language": "python",
"name": "conda-env-wfirst-py"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.5.2"
}
},
"nbformat": 4,
"nbformat_minor": 1
}
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