dtxe

#!/bin/bash
#
# Simeon Wong

if [ -d $1 ]
then
  # make destination directory
  mkdir $2
  
  SRCBASE=$(basename $1 .ds)

dtxe

#!/bin/bash
# Usage dicom_to_nifti_anonymize [source dir] [dest dir] [participant ID]

if [[ $# -lt 2 ]]; then
	DEST=$1
else
  # make the directory if it doesn't exist
  if [ ! -d $2 ]; then
	  mkdir $2
  fi

dtxe

%% transforms
% transform into fsl coordinates (CT)
fslpos = elec.elecpos;
fslpos(:,4) = 1;
fslpos = (img_ct.transform \ fslpos')';

if img_ct.hdr.x_r == 1
  fslpos(:,1) = img_ct.dim(1) - fslpos(:,1);
end

dtxe

#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Created on Thu Dec  5 11:40:07 2019

@author: simeonwong
"""

import pyedflib
import os.path

dtxe

#!/bin/bash

PLANID=12345678
JWTTOKEN={{TOKEN}}

for DAY in {1..365}
do
  curl 'https://plans.youversionapi.com/4.0/together/$PLANID/activities?day=$DAY&page=1&order=desc&talk_it_over=0'   \
    -H 'authority: plans.youversionapi.com'   \
    -H 'x-youversion-app-version: 4'   \

dtxe

import numpy as np
from collections import deque

import datetime

iters = 2000
values = np.random.rand(10000)


def nproll():

dtxe

#!/bin/bash -x

# fixQpdf.sh [zip file] [output folder]


BASEDIR=$HOME
TEMPDIR=$(uuidgen)
mkdir $BASEDIR/$TEMPDIR
mkdir $BASEDIR/$2

dtxe

def list_mutator(inner_list):
    inner_list.append(4)

def list_setter(inner_list):
    inner_list = inner_list + [4]

def list_returner(inner_list):
    inner_list = inner_list + [4]
    return inner_list

dtxe

#!/bin/bash

cat - << EOF > /etc/apt/sources.d/bionic.list
deb http://ca.archive.ubuntu.com/ubuntu/ bionic main
deb http://ca.archive.ubuntu.com/ubuntu/ bionic universe
EOF

apt update
apt install -y g++-6
apt install -y libgfortran3

dtxe

''' quick and dirty script to glob a directory of dicom files and extract the header information into a csv file '''

import pydicom
import glob
import pandas as pd
from tqdm import tqdm
import numpy as np

###########################
# Parameters