000-default.conf

<VirtualHost *:80>
        ServerAdmin webmaster@localhost

        DocumentRoot /var/www/drupal7
        <Directory />
                Options FollowSymLinks
                AllowOverride None
        </Directory>
        <Directory /var/www/drupal7/>
                Options Indexes FollowSymLinks MultiViews
                AllowOverride all
                Order allow,deny
                allow from all
        </Directory>

        ScriptAlias /cgi-bin/ /usr/lib/cgi-bin/
        <Directory "/usr/lib/cgi-bin">
                AllowOverride None
                Options +ExecCGI -MultiViews +SymLinksIfOwnerMatch
                Order allow,deny
                Allow from all
        </Directory>

        ErrorLog ${APACHE_LOG_DIR}/error.log

        # Possible values include: debug, info, notice, warn, error, crit,
        # alert, emerg.
        LogLevel warn

        CustomLog ${APACHE_LOG_DIR}/access.log combined

    Alias /doc/ "/usr/share/doc/"
    <Directory "/usr/share/doc/">
        Options Indexes MultiViews FollowSymLinks
        AllowOverride None
        Order deny,allow
        Deny from all
        Allow from 127.0.0.0/255.0.0.0 ::1/128
    </Directory>

        ProxyPass /adore-djatoka http://localhost:8080/adore-djatoka
        ProxyPassReverse /adore-djatoka http://localhost:8080/adore-djatoka

</VirtualHost>

deploy.sh

#!/bin/bash
# Download this gist folder and run the follwing command
# cd /vagrant && cp islandora-install.properties ~/islandora-install.properties && sudo chmod +x deploy.sh && sudo bash -l deploy.sh

echo -e "\x1B[35m cp islandora-install.properties ~/islandora-install.properties\e[0m"
echo -e "\x1B[36m sudo chmod +x deploy.sh\e[0m"
echo -e "\x1B[36m sudo bash -l deploy.sh\e[0m"

echo -e "\x1B[35mSource environment (Please note: this must be redone if you close your shell mid-install):\e[0m"
chmod +x ~/islandora-install.properties
. ~/islandora-install.properties

echo -e "\x1B[35mEnsure latest core os updates:\e[0m"
echo -e "\x1B[36mapt-get -y update && apt-get -y upgrade\e[0m"
apt-get -y update -qq && apt-get -y upgrade -qq && echo "All apps up to date now!" && notify-send "All upgrades up to date now!"

echo -e "\x1B[35mAdd repo to easily obtain oracle java installer:\e[0m"
apt-get -y install python-software-properties && add-apt-repository -y ppa:webupd8team/java && apt-get -y update

echo -e "\x1B[35mAccept license agreement and enter root password when asked.\e[0m"
apt-get -y install oracle-java8-installer libjpeg-dev libpng12-dev libtiff4-dev php5 php5-cli php5-curl php5-dev php5-gd php5-ldap php5-mysql php5-xsl php-apc php-soap php-xml-htmlsax3 php-xml-parser php-xml-rpc php-xml-rpc2 php-xml-rss php-xml-serializer php5-imagick php5-mcrypt php-xml* mysql-server vim curl apache2 rsync wget imagemagick ant libimage-exiftool-perl unzip lame autoconf build-essential checkinstall git libass-dev libfaac-dev libgpac-dev libmp3lame-dev libopencore-amrnb-dev libopencore-amrwb-dev librtmp-dev libtheora-dev libtool libvorbis-dev pkg-config texi2html zlib1g-dev ffmpeg2theora poppler-utils python-pip libreoffice libreoffice-writer libreoffice-calc libreoffice-impress libreoffice-draw bibutils ufraw links monit tesseract-ocr tesseract-ocr-eng tesseract-ocr-fra tesseract-ocr-spa tesseract-ocr-ita tesseract-ocr-por tesseract-ocr-hin tesseract-ocr-deu tesseract-ocr-jpn tesseract-ocr-rus

echo -e "\x1B[35mghostscript\e[0m"
wget http://downloads.ghostscript.com/public/old-gs-releases/ghostscript-9.05.tar.gz
tar xvzf ghostscript-9.05.tar.gz && cd ghostscript-9.05
./configure
make && make install
`gs --version`

echo -e "\x1B[35mffmpeg\e[0m"
mkdir ~/ffmpeg-source
cd ~/ffmpeg-source

echo -e "\x1B[35myasm\e[0m"
wget http://www.tortall.net/projects/yasm/releases/yasm-1.2.0.tar.gz
tar xzvf yasm-1.2.0.tar.gz && rm -rf yasm-1.2.0.tar.gz && cd yasm-1.2.0
./configure
make
checkinstall --pkgname=yasm --pkgversion="1.2.0" --backup=no --deldoc=yes --fstrans=no --default

echo -e "\x1B[35mx264\e[0m"
cd ~/ffmpeg-source
git clone --depth 1 git://git.videolan.org/x264.git
cd x264
./configure --enable-static --enable-shared
make
checkinstall --pkgname=x264 --pkgversion="3:$(./version.sh | awk -F'[" ]' '/POINT/{print $4"+git"$5}')" --backup=no --deldoc=yes  --fstrans=no --default
ldconfig
cd ~/ffmpeg-source

echo -e "\x1B[35maac\e[0m"
git clone --depth 1 git://github.com/mstorsjo/fdk-aac.git
cd fdk-aac
autoreconf -fiv
./configure --disable-shared
make
checkinstall --pkgname=fdk-aac --pkgversion="$(date +%Y%m%d%H%M)-git" --backup=no --deldoc=yes --fstrans=no --default

echo -e "\x1B[35mlibvpx\e[0m"
cd ~/ffmpeg-source
git clone https://chromium.googlesource.com/webm/libvpx.git
cd libvpx
git checkout 8366a6e4ba95e6d5af040815d2afbb4bfe628d3f
./configure --disable-examples --disable-unit-tests
make
checkinstall --pkgname=libvpx --pkgversion="1:$(date +%Y%m%d%H%M)-git" --backup=no --deldoc=yes --fstrans=no --default

echo -e "\x1B[35mopus\e[0m"
cd ~/ffmpeg-source
git clone --depth 1 git://git.xiph.org/opus.git
cd opus
./autogen.sh
./configure --disable-shared
make
checkinstall --pkgname=libopus --pkgversion="$(date +%Y%m%d%H%M)-git" --backup=no --deldoc=yes --fstrans=no --default

echo -e "\x1B[35mffmpeg\e[0m"
cd ~/ffmpeg-source
wget http://www.ffmpeg.org/releases/ffmpeg-1.1.1.tar.gz
tar xf ffmpeg-1.1.1.tar.gz && rm -rf ffmpeg-1.1.1.tar.gz
cd ffmpeg-1.1.1
sed -i 's/×/x/' doc/filters.texi
sed -i 's/×/x/' doc/ffmpeg.texi
./configure --enable-gpl --enable-libass --enable-libfaac --enable-libfdk-aac --enable-libmp3lame --enable-libopencore-amrnb --enable-libopencore-amrwb --enable-librtmp --enable-libtheora --enable-libvorbis --enable-libvpx --enable-libx264 --enable-nonfree --enable-version3 --enable-libopus
make
checkinstall --pkgname=ffmpeg --pkgversion="7:$(date +%Y%m%d%H%M)-git" --backup=no --deldoc=yes --fstrans=no --default
make install
hash -r

echo -e "\x1B[35mThe following should tell apt to not upgrade ffmpeg (we need version 1.1.1):\e[0m"
apt-mark hold ffmpeg
ffmpeg -version && cd ~ && rm -rf ~/ffmpeg-source

echo -e "\x1B[35mSoftware Dependencies installed by Binaries\e[0m"
echo -e "\x1B[36mffmpeg2theora\e[0m"

cd ~ && wget http://v2v.cc/~j/ffmpeg2theora/ffmpeg2theora-0.29.linux64.bin && chmod a+x ffmpeg2theora-0.29.linux64.bin && install -m 755 ffmpeg2theora-0.29.linux64.bin /usr/bin/ffmpeg2theora && rm -rf ffmpeg2theora-0.29.linux64.bin

echo -e "\x1B[35mjava and tomcat\e[0m"
echo -e "\x1B[36mNow that java is installed, we can set JAVA_HOME and also add it to ~/islandora-install.properties\e[0m"
echo $( dirname $( dirname $( readlink -e /usr/bin/java ) ) )

. ~/islandora-install.properties

echo -e "\x1B[35mNote that you need to ensure that your update-alternatives point to the right java and javac.\e[0m"
update-alternatives --config java
update-alternatives --config javac

echo -e "\x1B[35mAdds Fedora User and adds fedora environment variables to /etc/profile.d/fedora.sh\e[0m"
FEDORA_USER_TEST=`getent passwd $FEDORA_USER`
useradd -m -d $FEDORA_HOME -s /bin/false $FEDORA_USER

echo -e "\x1B[35mMake environment variables match with what we set above:\e[0m"
echo -e 'export FEDORA_HOME=/usr/local/fedora\nexport CATALINA_HOME=/usr/local/fedora/tomcat\nexport CATALINA_PID="$CATALINA_HOME/catalina.pid"\nexport JAVA_OPTS="-Xms1024m -Xmx1024m -XX:MaxPermSize=512m -XX:+CMSClassUnloadingEnabled -Djavax.net.ssl.trustStore=/usr/local/fedora/server/truststore -Djavax.net.ssl.trustStorePassword=tomcat"\nexport JAVA_HOME=/usr/lib/jvm/java-7-oracle/jre\nexport FEDORA_USER=fedora' > /etc/profile.d/fedora.sh
sed -i "s|JAVA_OPTS=\"-Xms1024m -Xmx1024m -XX:MaxPermSize=512m -XX:+CMSClassUnloadingEnabled -Djavax.net.ssl.trustStore=/usr/local/fedora/server/truststore -Djavax.net.ssl.trustStorePassword=tomcat\"|JAVA_OPTS=\"$JAVA_OPTS\"|g" /etc/profile.d/fedora.sh
sed -i "s|FEDORA_HOME=\"/usr/local/fedora\"|FEDORA_HOME=\"$FEDORA_HOME\"|g" /etc/profile.d/fedora.sh
sed -i "s|CATALINA_HOME=\"/usr/local/fedora/tomcat\"|CATALINA_HOME=\"$CATALINA_HOME\"|g"` /etc/profile.d/fedora.sh
sed -i "s|FEDORA_USER=fedora|FEDORA_USER=$FEDORA_USER|g" /etc/profile.d/fedora.sh
sed -i "s|JAVA_HOME=/usr/lib/jvm/java-7-oracle/jre|JAVA_HOME=$JAVA_HOME|g"` /etc/profile.d/fedora.sh

echo -e "\x1B[35mCreate tomcat init.d startup script:\e[0m"
cd /etc/init.d
wget --no-check-certificate https://raw.github.com/discoverygarden/Fedora-Init-Script/master/tomcat
ln -s tomcat fedora
chmod a+x tomcat
$SCHEDULE_TOMCAT_SERVICE_COMMAND
cd ~
wget http://archive.apache.org/dist/tomcat/tomcat-7/v$TOMCAT_VERSION/bin/apache-tomcat-$TOMCAT_VERSION.tar.gz
tar xf apache-tomcat-$TOMCAT_VERSION.tar.gz
mv apache-tomcat-$TOMCAT_VERSION /usr/share
ln -s /usr/share/apache-tomcat-$TOMCAT_VERSION /usr/share/tomcat
chown -R $FEDORA_USER:$FEDORA_USER /usr/share/apache-tomcat-$TOMCAT_VERSION

echo -e "\x1B[35mFits\e[0m"
cd /opt
wget http://fits.googlecode.com/files/fits-0.6.2.zip
unzip -o fits-0.6.2.zip && rm -rf fits-0.6.2.zip && ln -s fits-0.6.2 fits && chmod a+x /opt/fits/fits.sh

echo -e "\x1B[35madore-djatoka\e[0m"
cd /opt
wget http://sourceforge.net/projects/djatoka/files/djatoka/1.1/adore-djatoka-1.1.tar.gz/download -O adore-djatoka-1.1.tar.gz
tar xf adore-djatoka-1.1.tar.gz && rm -rf adore-djatoka-1.1.tar.gz
ln -s adore-djatoka-1.1 adore-djatoka

echo -e "\x1B[35mMake kakadu available on the command line:\e[0m"
ln -s /opt/adore-djatoka/bin/Linux-x86-64/kdu_expand /usr/bin/kdu_expand
ln -s /opt/adore-djatoka/bin/Linux-x86-64/kdu_compress /usr/bin/kdu_compress
echo "/opt/adore-djatoka/lib/Linux-x86-64" > /etc/ld.so.conf.d/kakadu.conf
ldconfig

echo -e "\x1B[35mDrush\e[0m"
echo -e "\x1B[36mSpecify drush commit due to issues with newer drush versions and automated tests used by QA:\e[0m"
cd /opt
git clone https://github.com/drush-ops/drush.git && cd drush && git checkout b9e6c8c00da0fbf1227869cdf915b0c6cea466cc
ln -s /opt/drush/drush /usr/bin/drush

echo -e "\x1B[35mOpenOffice\e[0m"
cd /etc/init.d && wget --no-check-certificate https://raw.github.com/discoverygarden/openoffice-init-script/master/openoffice && chmod a+x openoffice
useradd -m -d /home/openoffice openoffice
service openoffice start
$SCHEDULE_OPENOFFICE_SERVICE_COMMAND

echo -e "\x1B[35mMonit\e[0m"
echo -e "\x1B[36mKeep openoffice running as a service with Monit as it has been known to crash.\e[0m"
echo -e "check process openoffice\n        matching \"/usr/lib/libreoffice/program/soffice.bin\"\n        start program = \"/etc/init.d/openoffice start\"\n        stop program = \"/etc/init.d/openoffice stop\"\n        if failed host 127.0.0.1 port 8100 then restart\n        if 5 restarts within 5 cycles then timeout" > $MONIT_CONF_DIR/openoffice.conf

sed -i 's|# set httpd| set httpd|g' $MONIT_CONFIG_FILE

sed -i 's|#    use address|    use address|g' $MONIT_CONFIG_FILE

sed -i 's|#    allow localhost|    allow localhost|g' $MONIT_CONFIG_FILE

sed -i 's|    allow admin:monit|#    allow admin:monit|g' $MONIT_CONFIG_FILE

sed -i 's|    allow @monit |#    allow @monit |g' $MONIT_CONFIG_FILE

sed -i 's|    allow @users readonly |#    allow @users readonly |g' $MONIT_CONFIG_FILE

service monit restart

yes | cp -rf /vagrant/000-default.conf /etc/apache2/sites-available/000-default.conf

a2enmod rewrite

a2enmod proxy

a2enmod proxy_http

pecl install uploadprogress

sed -i '949iextension=uploadprogress.so' /etc/php5/apache2/php.ini

sed -i "s|memory_limit = 128M|memory_limit = 512M|g" /etc/php5/apache2/php.ini

sed -i "s|post_max_size = 8M|post_max_size = 2048M|g" /etc/php5/apache2/php.ini

sed -i "s|upload_max_filesize = 2M|upload_max_filesize = 2048M|g" /etc/php5/apache2/php.ini

echo "apc.shm_size = 64M" >> $APC_CONFIG_FILE

echo -e "\x1B[35mSetup MySQL Databases and Server\e[0m"
echo -e "\x1B[36mRun mysql_secure_installation to ensure security:\e[0m"


MYSQL=`which mysql`

$MYSQL -uroot -p$DB_ROOT_PASSWORD -e "$SQL"

echo -e "\x1B[35mAdd a mysql backup script:\e[0m"

if [ ! -d /root/bin ]; then
  mkdir -p /root/bin
  fi
  echo -e '#!/bin/bash\n#\n# Dumps all MySQL databases and removes backups older than 1 week\n# With optional scp to another host\n\nBackupFolder=/dbbackups\nMySQLUser=root\nMySQLPass=PASSWORD\n# These next few are just used for scp, which is optional if DO_SCP != yes\nDO_SCP=no\nREMOVE_LOCAL_COPY=no\nFOLDER=dbBACK/mysql-newdb\nBACKUP_USER=backupuser\nBACKUP_HOST=backuppass\n\nDATE=$(date +%Y%m%d)\nOLDDATE=$(date +%Y%m%d -d ' 7 days ago')\n\nif [ ! -d "$BackupFolder" ]; then\n        mkdir -p "$BackupFolder"\n        if [ $? -gt 0 ]; then\n                echo "ERROR: Could not create $BackupFolder"\n                exit 1\n        fi\nfi\n\nfor dbname in $(mysql --user="$MySQLUser" --password="$MySQLPass" -Bse "show databases"); do\n  rm -f "$BackupFolder/$dbname-$OLDDATE.bz2"\n  DumpName="$BackupFolder/$dbname-$DATE.bz2"\n  mysqldump --user="$MySQLUser" --password="$MySQLPass" --opt "$dbname" | bzip2 -9 >"$DumpName"\n  if [ $? -gt 0 ]; then\n        echo "Backup of $dbname failed! (mysqldump)"\n  else\n        if [ "$DO_SCP" == 'yes' ]; then\n            scp -B -o StrictHostKeyChecking=no "$DumpName" "$BACKUP_USER"@"$BACKUP_HOST":"$FOLDER/"\n            if [ $? -gt 0 ]; then\n                echo "Backup of $dbname failed! (scp)"\n            fi\n            if [ "$REMOVE_LOCAL_COPY" == 'yes' ]; then\n                rm -f "$DumpName"\n            fi\n        fi\n  fi\ndone\n' > /root/bin/mysqlBackup.sh && chmod a+x /root/bin/mysqlBackup.sh


/root/bin/mysqlBackup.sh

sed -i "s|PASSWORD|$DB_ROOT_PASSWORD|g" /root/bin/mysqlBackup.sh

# Update crontab to schedule mysql backup:
# crontab -e
# Add:
# 15 1 * * * /root/bin/mysqlBackup.sh

echo -e "\x1B[35mwrite out current crontab\e[0m"

crontab -l > mycron
echo -e "\x1B[35mecho new cron into cron file\e[0m"

echo "15 1 * * * /root/bin/mysqlBackup.sh" >> mycron

echo -e "\x1B[35minstall new cron file\e[0m"

crontab mycron
rm mycron

mkdir -p /dbbackups

echo -e "\x1B[35mDumps will be stored in /dbbackups\e[0m"

echo -e "\x1B[35mInstall Fedora Commons\e[0m"
echo -e "\x1B[36mFedora Commons Base Install\e[0m"
echo -e "\x1B[36mCreate install properties file\e[0m"

cd ~

echo -e 'keystore.file=included\nri.enabled=true\nmessaging.enabled=true\napia.auth.required=false\ndatabase.jdbcDriverClass=com.mysql.jdbc.Driver\ntomcat.ssl.port=8443\nssl.available=true\ndatabase.jdbcURL=jdbc\:mysql\://localhost/fedora3?useUnicode\=true&characterEncoding\=UTF-8&autoReconnect\=true\nmessaging.uri=vm\:(broker\:(tcp\://localhost\:61616))\ndatabase.password=islandora\ndatabase.mysql.driver=included\ndatabase.username=fedoraAdmin\nfesl.authz.enabled=false\ntomcat.shutdown.port=8055\ndeploy.local.services=true\nxacml.enabled=true\ndatabase.mysql.jdbcDriverClass=com.mysql.jdbc.Driver\ntomcat.http.port=8080\nfedora.serverHost=localhost\ndatabase=mysql\ndatabase.driver=included\nfedora.serverContext=fedora\nllstore.type=akubra-fs\ntomcat.home=/usr/local/fedora/tomcat\nfesl.authn.enabled=true\ndatabase.mysql.jdbcURL=jdbc\:mysql\://localhost/fedora3?useUnicode\=true&characterEncoding\=UTF-8&autoReconnect\=true\nfedora.home=/usr/local/fedora\ninstall.type=custom\nservlet.engine=included\napim.ssl.required=false\nfedora.admin.pass=islandora\napia.ssl.required=false' > ~/install.properties

sed -i "s|localhost/fedora3?|localhost/$FEDORA_DB_NAME?|g" ~/install.properties

sed -i "s|database.password=islandora|database.password=$FEDORA_DB_PASS|g" ~/install.properties

sed -i "s|database.username=fedoraAdmin|database.username=$FEDORA_DB_USER|g" ~/install.properties

sed -i "s|fedora.home=/usr/local/fedora|fedora.home=$FEDORA_HOME|g" ~/install.properties

sed -i "s|tomcat.home=/usr/local/fedora/tomcat|tomcat.home=$CATALINA_HOME|g" ~/install.properties

sed -i "s|fedora.admin.pass=islandora|fedora.admin.pass=$FEDORA_ADMIN_PASS|g" ~/install.properties

sed -i "s|servlet.engine=included|servlet.engine=existingTomcat|g"  ~/install.properties

cd ~

wget http://downloads.sourceforge.net/fedora-commons/fcrepo-installer-$FEDORA_VERSION.jar

java -jar fcrepo-installer-$FEDORA_VERSION.jar install.properties

rm -rf fcrepo-installer-$FEDORA_VERSION.jar install.properties

sed -i "s|changeme|islandora|g" $FEDORA_HOME/server/config/fedora.fcfg

echo -e "\x1B[35mcopy over server.xml with the one provided with fedora\e[0m"


cp $CATALINA_HOME/conf/server.xml $CATALINA_HOME/conf/server.bak cp /usr/local/fedora/install/server.xml $CATALINA_HOME/conf/server.xml

echo -e "\x1B[35mNote remove maxSpareThreads property in /usr/share/tomcat/conf/server.xml as it no longer does anything.\e[0m"
echo -e "\x1B[36mTweak some Fedora settings:\e[0m"


sed -i "s|security.fesl.authN.jaas.apia.enabled=false|security.fesl.authN.jaas.apia.enabled=true|g" $FEDORA_HOME/server/config/spring/web/web.properties

unzip -o $CATALINA_HOME/webapps/fedora.war -d $CATALINA_HOME/webapps/fedora

chown -R $FEDORA_USER:$FEDORA_USER $FEDORA_HOME

chown -R $FEDORA_USER:$FEDORA_USER /usr/share/apache-tomcat-$TOMCAT_VERSION

echo -e "\x1B[35mStart and stop tomcat so fedora creates some dirs:\e[0m"

service tomcat deploy

echo -e "\x1B[35mXACML Settings\e[0m"
echo -e "\x1B[36mAdjust xacml policies:\e[0m"

rm -rf $FEDORA_HOME/data/fedora-xacml-policies/repository-policies/default/deny-purge-*

rm -rf $FEDORA_HOME/data/fedora-xacml-policies/repository-policies/default/deny-inactive-or-deleted-objects-or-datastreams-if-not-administrator.xml

rm -rf $FEDORA_HOME/data/fedora-xacml-policies/repository-policies/default/deny-policy-management-if-not-administrator.xml

echo -e "\x1B[35mNote: This file should either be removed or tweaked if you wish to access fedoraAdmin. Keep in mind firewall rules would need to be updated as well.\e[0m"

rm -rf $FEDORA_HOME/data/fedora-xacml-policies/repository-policies/default/deny-apim-if-not-localhost.xml

cd ~

git clone https://github.com/Islandora/islandora-xacml-policies && cd islandora-xacml-policies

mkdir $FEDORA_HOME/data/fedora-xacml-policies/repository-policies/islandora_policies && cp *.xml $FEDORA_HOME/data/fedora-xacml-policies/repository-policies/islandora_policies && rm -rf ~/islandora-xacml-policies

echo -e "\x1B[35mGSearch and Solr\e[0m"
echo -e "\x1B[36mGrab fedoragsearch and solr - do basic config:\e[0m"

cd ~

wget $FEDORA_GSEARCH_URL

unzip -o $FEDORA_GSEARCH_NAME.zip

cp $FEDORA_GSEARCH_NAME/fedoragsearch.war $CATALINA_HOME/webapps/ && unzip -o $FEDORA_GSEARCH_NAME/fedoragsearch.war -d $CATALINA_HOME/webapps/fedoragsearch && rm -rf $FEDORA_GSEARCH_NAME*

wget $SOLR_URL

tar -xf $SOLR_NAME.tgz

cp -r $SOLR_NAME/example/solr $FEDORA_HOME/solr

cp $SOLR_NAME/example/webapps/solr.war $CATALINA_HOME/webapps/ && unzip -o $SOLR_NAME/example/webapps/solr.war -d $CATALINA_HOME/webapps/solr

mkdir $FEDORA_HOME/solr/$SOLR_DEFAULT_CORE_PATH/data

chown -R $FEDORA_USER:$FEDORA_USER $FEDORA_HOME

cd $CATALINA_HOME/webapps/fedoragsearch/FgsConfig

echo -e "\x1B[35mant generateIndexingXslt:\e[0m"

ant -f fgsconfig-basic.xml -Dlocal.FEDORA_HOME=$FEDORA_HOME -DgsearchUser=$FEDORA_ADMIN_USER -DgsearchPass=$FEDORA_ADMIN_PASS -DfinalConfigPath=$CATALINA_HOME/webapps/fedoragsearch/WEB-INF/classes -DlogFilePath=$FEDORA_HOME/server/logs -DfedoraUser=$FEDORA_ADMIN_USER -DfedoraPass=$FEDORA_ADMIN_PASS -DobjectStoreBase=$FEDORA_HOME/data/objectStore -DindexDir=$FEDORA_HOME/solr/$SOLR_DEFAULT_CORE_PATH/data/index -DindexingDocXslt=foxmlToSolr -propertyfile fgsconfig-basic-for-islandora.properties
mv $FEDORA_HOME/solr/$SOLR_DEFAULT_CORE_PATH/conf/schema.xml $FEDORA_HOME/solr/$SOLR_DEFAULT_CORE_PATH/conf/schema.xml.bak

mv $FEDORA_HOME/solr/$SOLR_DEFAULT_CORE_PATH/conf/solrconfig.xml $FEDORA_HOME/solr/$SOLR_DEFAULT_CORE_PATH/conf/solrconfig.xml.bak

mv $CATALINA_HOME/webapps/fedoragsearch/WEB-INF/classes/fgsconfigFinal/index/FgsIndex/foxmlToSolr.xslt $CATALINA_HOME/webapps/fedoragsearch/WEB-INF/classes/fgsconfigFinal/index/FgsIndex/foxmlToSolr.xslt.bak

echo -e "\x1B[35mSolr Configuration\e[0m"

cd ~

git clone git://github.com/discoverygarden/basic-solr-config.git

cd basic-solr-config

git checkout 4.x

mv ~/basic-solr-config/conf/* $FEDORA_HOME/solr/$SOLR_DEFAULT_CORE_PATH/conf

mv ~/basic-solr-config/islandora_transforms $CATALINA_HOME/webapps/fedoragsearch/WEB-INF/classes/fgsconfigFinal/index/FgsIndex

mv ~/basic-solr-config/foxmlToSolr.xslt $CATALINA_HOME/webapps/fedoragsearch/WEB-INF/classes/fgsconfigFinal/index/FgsIndex/foxmlToSolr.xslt

cp ~/basic-solr-config/index.properties $CATALINA_HOME/webapps/fedoragsearch/WEB-INF/classes/fgsconfigFinal/index/FgsIndex/index.properties

cd ~

rm -rf ~/basic-solr-config

rm -rf ~/$SOLR_NAME*

cd $CATALINA_HOME/webapps/fedoragsearch/WEB-INF/lib

wget https://github.com/discoverygarden/dgi_gsearch_extensions/releases/download/v0.1.1/gsearch_extensions-0.1.1-jar-with-dependencies.jar -O gsearch_extensions-0.1.1-jar-with-dependencies.jar

echo -e "\x1B[35mAdore-Djatoka\e[0m"
echo -e "\x1B[36mInstall djatoka war:\e[0m"

cp /opt/adore-djatoka/dist/adore-djatoka.war $CATALINA_HOME/webapps && unzip -o /opt/adore-djatoka/dist/adore-djatoka.war -d $CATALINA_HOME/webapps/adore-djatoka

echo -e "\x1B[35mSetup Logging\e[0m"
echo -e "\x1B[36mPlease note logging still needs some TLC log4j and logrotate clash with some files:\e[0m"

cd ~

git clone https://github.com/discoverygarden/islandora_log_config.git

cd islandora_log_config

cp islandora_logrotate /etc/logrotate.d/

cp log4j.xml /usr/local/fedora/tomcat/webapps/fedoragsearch/WEB-INF/classes/log4j.xml

cp logging.properties /usr/local/fedora/tomcat/conf/logging.properties

cp log4j.properties /usr/local/fedora/tomcat/webapps/adore-djatoka/WEB-INF/classes/log4j.properties

cp logback.xml /usr/local/fedora/server/config/logback.xml

chown -R $FEDORA_USER:$FEDORA_USER $FEDORA_HOME


echo -e "\x1B[35mDrupal Filter\e[0m"
echo -e "\x1B[36mSetup Drupal filter:\e[0m"

cd $CATALINA_HOME/webapps/fedora/WEB-INF/lib

wget --no-check-certificate $DRUPAL_FILTER_URL

echo -e 'fedora-auth\n{\n\torg.fcrepo.server.security.jaas.auth.module.XmlUsersFileModule required\n\tdebug=true; \n\tca.upei.roblib.fedora.servletfilter.DrupalAuthModule required\n\tdebug=true; \n};\n\nfedora-auth-xmlusersfile\n{\n\torg.fcrepo.server.security.jaas.auth.module.XmlUsersFileModule required\n\tdebug=true;\n};\n\nfedora-auth-ldap-bind\n{\n\torg.fcrepo.server.security.jaas.auth.module.LdapModule required\n\thost.url="ldap://dev01.muradora.org"\n\tauth.type="simple"\n\tbind.mode="bind"\n\tbind.filter="uid={0},ou=people,dc=muradora,dc=org"\n\tdebug=true;\n};\n\nfedora-auth-ldap-bind-search-bind\n{\n\torg.fcrepo.server.security.jaas.auth.module.LdapModule required\n\thost.url="ldap://dev01.muradora.org"\n\tauth.type="simple"\n\tbind.mode="bind-search-bind"\n\tbind.user="uid=binduser,ou=people,dc=muradora,dc=org"\n\tbind.pass="murabind"\n\tsearch.base="ou=people,dc=muradora,dc=org"\n\tsearch.filter="(uid={0})"\n\tattrs.fetch="cn,sn,mail,displayName,carLicense"\n\tdebug=true;\n};\n\nfedora-auth-ldap-bind-search-compare\n{\n\torg.fcrepo.server.security.jaas.auth.module.LdapModule required\n\thost.url="ldap://dev01.muradora.org"\n\tauth.type="simple"\n\tbind.mode="bind-search-compare"\n\tbind.user="uid=binduser,ou=people,dc=muradora,dc=org"\n\tbind.pass="murabind"\n\tsearch.base="ou=people,dc=muradora,dc=org"\n\tsearch.filter="(uid={0})"\n\tattrs.fetch="cn,sn,mail,displayName,carLicense"\n\tdebug=true;\n};' > $FEDORA_HOME/server/config/jaas.conf

cd $FEDORA_HOME/server/config

wget https://raw.github.com/Islandora/islandora_drupal_filter/master/filter-drupal.xml

sed -i "s|DB_SERVER|$DB_SERVER|g" $FEDORA_HOME/server/config/filter-drupal.xml

sed -i "s|DRUPAL_DB_NAME|$DRUPAL_DB_NAME|g" $FEDORA_HOME/server/config/filter-drupal.xml

sed -i "s|DRUPAL_DB_USER|$DRUPAL_DB_USER|g" $FEDORA_HOME/server/config/filter-drupal.xml

sed -i "s|DRUPAL_DB_PASS|$DRUPAL_DB_PASS|g" $FEDORA_HOME/server/config/filter-drupal.xml

echo -e "\x1B[35mStart fedora fully configured:\e[0m"

chown -R $FEDORA_USER:$FEDORA_USER $FEDORA_HOME

service tomcat start

echo -e "\x1B[35mInstall Drupal\e[0m"
echo -e "\x1B[36mCLUI Config\e[0m"
echo -e "\x1B[36mNote: Some libraries, modules, contrib are optional but are included to support additional theming. e.g. features, strongarm, node_export.\e[0m"

cd $OS_DEFAULT_DOCUMENTROOT

drush dl drupal

mv drupal-7* drupal7

cd drupal7

mkdir sites/default/files

mkdir sites/all/{modules,themes,libraries}

cp sites/default/default.settings.php sites/default/settings.php

cd sites/all/modules

echo -e "\x1B[35mIslandora Modules\e[0m"
echo -e "\x1B[36mGit clone the following modules:\e[0m"
echo -e "\x1B[36mmodslist.sh helper script to handle the git repos to install modules:\e[0m"

#!/bin/bash
cd /var/www/drupal7/sites/all/modules
git clone https://github.com/Islandora/islandora.git
git clone https://github.com/Islandora/islandora_scholar.git
git clone https://github.com/discoverygarden/google_analytics_reports.git
git clone https://github.com/discoverygarden/islandora_ga_reports.git
git clone https://github.com/Islandora/islandora_solr_search.git
git clone https://github.com/Islandora/islandora_solr_views.git
git clone https://github.com/Islandora/islandora_solution_pack_collection.git
git clone https://github.com/Islandora/objective_forms.git
git clone https://github.com/Islandora/islandora_xml_forms.git
git clone https://github.com/Islandora/php_lib.git
git clone https://github.com/Islandora/islandora_importer.git
git clone https://github.com/Islandora/islandora_bookmark.git
git clone https://github.com/Islandora/islandora_oai.git
git clone https://github.com/Islandora/islandora_solution_pack_audio.git
git clone https://github.com/Islandora/islandora_solution_pack_book.git
git clone https://github.com/Islandora/islandora_solution_pack_image.git
git clone https://github.com/Islandora/islandora_solution_pack_large_image.git
git clone https://github.com/Islandora/islandora_solution_pack_pdf.git
git clone https://github.com/Islandora/islandora_solution_pack_video.git
git clone https://github.com/Islandora/islandora_paged_content.git
git clone https://github.com/Islandora/islandora_internet_archive_bookreader.git
git clone https://github.com/Islandora/islandora_ocr.git
git clone https://github.com/Islandora/islandora_openseadragon.git
git clone https://github.com/Islandora/islandora_jwplayer.git
git clone https://github.com/Islandora/islandora_fits.git
git clone https://github.com/Islandora/islandora_simple_workflow.git
git clone https://github.com/Islandora/islandora_book_batch.git
git clone https://github.com/Islandora/islandora_batch.git
git clone https://github.com/Islandora/islandora_ip_embargo.git
git clone https://github.com/Islandora/islandora_solution_pack_compound.git
git clone https://github.com/Islandora/islandora_solution_pack_newspaper.git
git clone https://github.com/Islandora/islandora_xacml_editor.git
git clone https://github.com/Islandora/islandora_marcxml.git
git clone https://github.com/discoverygarden/islandora_featured_collection.git
git clone https://github.com/Islandora/islandora_solr_metadata.git
git clone https://github.com/discoverygarden/solrmetadataconfigs.git
git clone https://github.com/discoverygarden/islandora_solution_pack_document.git
git clone https://github.com/discoverygarden/islandora_jodconverter.git
git clone https://github.com/discoverygarden/islandora_plupload.git
git clone https://github.com/discoverygarden/islandora_solution_pack_entities.git
git clone https://github.com/Islandora-Labs/islandora_binary_object.git
git clone https://github.com/Islandora/islandora_checksum.git
git clone https://github.com/Islandora/islandora_checksum_checker.git
git clone https://github.com/Islandora/islandora_premis.git
git clone https://github.com/Islandora/islandora_bagit.git

echo -e "\x1B[35mDependency if bagit is to be used:\e[0m"


/usr/bin/pear install Archive_Tar

echo -e "\x1B[35mLibraries\e[0m"

cd /var/www/drupal7/sites/all/libraries/

git clone -b $TUQUE_BRANCH git://github.com/Islandora/tuque.git

git clone  https://github.com/Islandora/internet_archive_bookreader.git bookreader

wget http://openseadragon.github.io/releases/openseadragon-bin-0.9.129.zip  && unzip openseadragon-bin-0.9.129.zip && rm -rf openseadragon-bin-0.9.129.zip && mv openseadragon-bin-0.9.129 openseadragon

echo -e "\x1B[35mJWPlayer\e[0m"
wget https://ftp.drupal.org/files/projects/jw_player-7.x-1.x-dev.zip && unzip -o jw_player-7.x-1.x-dev.zip && rm -rf jw_player-7.x-1.x-dev.zip

echo -e "\x1B[35mNOTE: link no longer available. You can sign up to obtain this but licensing requirements are in question. Needs to be discussed.\e[0m"

wget https://github.com/moxiecode/plupload/archive/v1.5.8.zip -O v1.5.8.zip && unzip -o v1.5.8.zip && rm -rf v1.5.8.zip && mv plupload-1.5.8 plupload

wget http://sourceforge.net/projects/jodconverter/files/JODConverter/2.2.2/jodconverter-2.2.2.zip/download -O jodconverter-2.2.2.zip && unzip -o jodconverter-2.2.2.zip && rm -rf jodconverter-2.2.2.zip

mkdir jquery.cycle && cd jquery.cycle && wget http://malsup.github.com/jquery.cycle.all.js

drush dl imagemagick libraries views ctools oauth chart google_analytics views_slideshow views_responsive_grid strongarm features designkit conditional_styles socialmedia widgets features_extra uuid node_export block_class ldap entity colorbox rules xmlsitemap css_injector

echo -e "\x1B[35mDrupal site install\e[0m"
echo -e "\x1B[36mPlease note that you should consider making the drupal directory permissions more secure. These permissions will allow you to install modules through the drupal web interface however if this functionality is not required recommend locking down permissions using something such as https://github.com/discoverygarden/secure_drupal_file after the install.\e[0m"

chown -R $APACHE_USER:$APACHE_USER /var/www/drupal7

drush -y site-install standard --account-name=$DRUPAL_ADMIN_USER --account-pass=$DRUPAL_ADMIN_PASS --db-url=mysql://$DRUPAL_DB_USER:$DRUPAL_DB_PASS@localhost/$DRUPAL_DB_NAME

echo -e "\x1B[35mSecure settings.php\e[0m"

chmod 440 /var/www/drupal7/sites/default/settings.php


echo -e "\x1B[35mDrush Enables and Configuration\e[0m"
echo -e "\x1B[36mLine: 541\e[0m"
drush en block color comment contextual dashboard dblog field field_sql_storage field_ui file filter help image list menu node number options overlay path rdf shortcut system taxonomy text toolbar user bartik seven imagemagick libraries views update ctools oauth_common oauth_common_providerui system_charts chart_views chart googleanalytics views_responsive_grid strongarm features designkit conditional_styles fe_block uuid node_export node_export_features widgets socialmedia block_class colorbox rules entity_token css_injector

drush -y colorbox-plugin

drush -y dis overlay

drush vset islandora_base_url "$ISLANDORA_BASE"

drush vset islandora_solr_url "$SOLR_BASE"

drush -y --user=1 en islandora islandora_audio islandora_basic_collection islandora_basic_image islandora_fits islandora_importer islandora_openseadragon islandora_simple_workflow islandora_video islandora_jwplayer islandora_pdf  islandora_paged_content islandora_ocr islandora_internet_archive_bookreader islandora_large_image islandora_book islandora_batch islandora_book_batch xml_form_api xml_form_elements xml_schema_api objective_forms php_lib islandora_solr islandora_solr_config islandora_solr_views islandora_ga_reports islandora_scholar islandora_oai google_analytics_reports islandora_importer xml_form_builder xml_forms islandora_bibliography islandora_scholar_embargo islandora_google_scholar islandora_marcxml islandora_xacml_editor islandora_xacml_api zip_importer pmid_importer ris_importer islandora_bookmark doi_importer endnotexml_importer citation_exporter bartik seven imagemagick libraries views views_ui ctools csl citeproc oauth_common oauth_common_providerui system_charts chart_views chart googleanalytics islandora_compound_object islandora_ip_embargo islandora_newspaper views_slideshow views_slideshow_cycle islandora_featured_collection islandora_solr_metadata islandora_document islandora_jodconverter islandora_entities islandora_entities_csv_import islandora_binary_object

drush php-eval "variable_set('islandora_large_image_viewers', array('name' => array('none' => 'none', 'islandora_openseadragon' => 'islandora_openseadragon'),'default' => 'islandora_openseadragon'));"

drush php-eval "variable_set('islandora_video_viewers', array('name' => array('none' => 'none', 'islandora_jwplayer' => 'islandora_jwplayer'),'default' => 'islandora_jwplayer'));"

drush php-eval "variable_set('islandora_audio_viewers', array('name' => array('none' => 'none', 'islandora_jwplayer' => 'islandora_jwplayer'),'default' => 'islandora_jwplayer'));"

drush php-eval "variable_set('islandora_book_viewers', array('name' => array('none' => 'none', 'islandora_internet_archive_bookreader' => 'islandora_internet_archive_bookreader'), 'default' => 'islandora_internet_archive_bookreader'));"

drush php-eval "variable_set('islandora_book_page_viewers', array('name' => array('none' => 'none', 'islandora_openseadragon' => 'islandora_openseadragon'), 'default' => 'islandora_openseadragon'));"

drush php-eval "variable_set('islandora_newspaper_page_viewers', array('name' => array('none' => 'none', 'islandora_openseadragon' => 'islandora_openseadragon'),'default' => 'islandora_openseadragon'))"

drush php-eval "variable_set('islandora_newspaper_issue_viewers', array('name' => array('none' => 'none', 'islandora_internet_archive_bookreader' => 'islandora_internet_archive_bookreader'),'default' => 'islandora_internet_archive_bookreader'))"

drush vset islandora_pdf_create_fulltext "1"

drush vset islandora_pdf_path_to_pdftotext `which pdftotext`

drush vset islandora_metadata_display "islandora_solr_metadata"

drush vset islandora_fits_executable_path "/opt/fits/fits.sh"

drush vset islandora_book_tesseract `which tesseract`

drush vset islandora_ocr_tesseract `which tesseract`

drush vset islandora_batch_java `which java`

drush php-eval "variable_set('islandora_ocr_tesseract_enabled_languages', array('deu-frak' => deu-frak, 'eng' => eng, 'fra' => fra, 'ita' => ita, 'jpn' => jpn, 'por' => por, 'spa' => spa, 'dan-frak' => 0, 'deu' => 0, 'hin' => 0, 'ita_old' => 0, 'rus' => 0, 'slk-frak' => 0, 'spa_old' => 0));"

drush vset islandora_lame_url `which lame`

drush vset islandora_video_ffmpeg_path `which ffmpeg`

drush vset islandora_video_ffmpeg2theora_path `which ffmpeg2theora`

drush vset islandora_paged_content_gs `which gs`

drush vset imagemagick_convert `which convert`

drush vset islandora_document_create_fulltext "1"

drush vset islandora_document_path_to_pdftotext `which pdftotext`

drush vset site_name "Stock Islandora and Fedora"

drush vset image_toolkit "imagemagick"

drush vset error_level $ERROR_LEVEL

drush php-eval "variable_set('oai2_date_field', 'fgs_lastModifiedDate_dt')"

echo -e "\x1B[35mNote: This should be a publicly resolvable URL or viewers will not work for people who cannot resolve the name. You also should ensure that the /etc/hosts file is pointing the name at localhost.\e[0m"


drush vset islandora_paged_content_djatoka_url "http://localhost:8080/adore-djatoka/"

drush vset user_register 0

drush -y updb

drush -y cc all

service $APACHE_SERVICE restart

drush cc all
echo -e "\x1B[35mDONE!!!!!\e[0m"

islandora-install.properties

#!/bin/bash
    DB_SERVER="localhost"
    DB_ROOT_PASSWORD="password"            # Set MySQL root password -> keep it simple -> run mysql_secure_installation after install to secure mySQL
    DRUPAL_DB_NAME="drupal7"               # Drupal database name
    DRUPAL_DB_USER="drupal"                # Drupal username for settings.php file
    DRUPAL_DB_PASS="password"              # Drupal password for settings.php file
    DRUPAL_ADMIN_USER="admin"              # Drupal admin username to log into Drupal Site
    DRUPAL_ADMIN_PASS="password"           # Drupal admin password to log into Drupal Site
    DRUPAL_SITE_NAME="Islandora Install"   # Drupal site name - displayed on the web site
    FEDORA_VERSION="3.8.1"                 # Fedora version to install:  3.5 or 3.6.2 or 3.7.0 or 3.7.1
    FEDORA_DB_NAME="fedora3"               # Name of fedora MySQL database -> fedora3 is recommended
    FEDORA_DB_USER="fedoraAdmin"           # Fedora db username -> for fedora.fcfg file
    FEDORA_DB_PASS="password"              # Fedora db password -> for fedora.fcfg file
    FEDORA_ADMIN_USER="fedoraAdmin"        # Username for http://localhost:8080/fedora/admin
    FEDORA_ADMIN_PASS="password"           # Password for http://localhost:8080/fedora/admin
    FEDORA_USER="fedora"                   # User that tomcat runs as
    FEDORA_HOME="/usr/local/fedora"        # Fedora home dir
    CATALINA_HOME="/usr/share/tomcat"    # Tomcat location
    TOMCAT_VERSION="7.0.55"
# NOTE adjust memory so that it is no larger than half of total system memory. Depending on stack deployment this can be adjusted further. We don’t recommend running stack on system with less than 4GB of ram. Recommend adding -XX:+UseParallelOldGC for multi cpu systems

    JAVA_OPTS="-Xms3072m -Xmx3072m -server -Djavax.net.ssl.trustStore=/usr/local/fedora/server/truststore -Djavax.net.ssl.trustStorePassword=tomcat -Dsolr.solr.home=/usr/local/fedora/solr -Dkakadu.home=/opt/adore-djatoka/bin/Linux-x86-64 -Djava.library.path=/opt/adore-djatoka/lib/Linux-x86-64 -DLD_LIBRARY_PATH=/opt/adore-djatoka/lib/Linux-x86-64"
    JAVA_HOME=/usr/lib/jvm/java-8-oracle/jre
    # Moved this down below java install please change to match java version
    TOMCAT_BASE="http://localhost:8080"
    ISLANDORA_BASE="$TOMCAT_BASE/fedora"
    SOLR_BASE="$TOMCAT_BASE/solr"
    ISLANDORA_BRANCH="7.x"
    TUQUE_BRANCH="1.x"
    ERROR_LEVEL="2"
    FEDORA_GSEARCH_URL="http://downloads.sourceforge.net/fedora-commons/fedoragsearch-2.8.zip"
    FEDORA_GSEARCH_NAME="fedoragsearch-2.8"
    SOLR_VERSION="4.2.0"
    NUMBER_OF_GSEARCH_THREADS="2"          #do one gsearch thread per cpu might want to skip multithreading if you only have 1 cpu
    GSEARCH_UPDATER_NAMES="FgsUpdaters FgsUpdater1"
    DRUPAL_FILTER_URL="https://github.com/Islandora/islandora_drupal_filter/releases/download/v7.1.3/fcrepo-drupalauthfilter-3.8.1.jar"
    SOLR_URL="http://archive.apache.org/dist/lucene/solr/4.2.0/solr-4.2.0.tgz"
    SOLR_NAME="solr-4.2.0"
    SOLR_DEFAULT_CORE_PATH="collection1"

    Q1="CREATE DATABASE IF NOT EXISTS $DRUPAL_DB_NAME CHARACTER SET utf8 COLLATE utf8_bin;"
    Q2="GRANT ALL ON $DRUPAL_DB_NAME.* TO $DRUPAL_DB_USER@localhost IDENTIFIED BY '$DRUPAL_DB_PASS';"
    Q3="CREATE DATABASE IF NOT EXISTS $FEDORA_DB_NAME CHARACTER SET utf8 COLLATE utf8_bin;"
    Q4="GRANT ALL ON $FEDORA_DB_NAME.* TO $FEDORA_DB_USER@localhost IDENTIFIED BY '$FEDORA_DB_PASS';"
    Q5="FLUSH PRIVILEGES;"
    SQL="${Q1}${Q2}${Q3}${Q4}${Q5}"

    APACHE_DEFAULT_SITE="000-default"
    APC_CONFIG_FILE="/etc/php5/mods-available/apcu.ini"
    PROXY_DJATOKA_CONFIG="/etc/apache2/conf-available/proxy_djatoka.conf"
    APACHE_USER="www-data"
    APACHE_SERVICE="apache2"
    OS_DEFAULT_DOCUMENTROOT="/var/www"
    SCHEDULE_TOMCAT_SERVICE_COMMAND="update-rc.d tomcat start 95 2 3 4 5 . stop 15 0 1 6 ."
    SCHEDULE_OPENOFFICE_SERVICE_COMMAND="update-rc.d openoffice start 92 2 3 4 5 . stop 30 0 1 6 ."
    CRON_SPOOL_DIR="/var/spool/cron/crontabs"
    MONIT_CONF_DIR="/etc/monit/conf.d"
    MONIT_CONFIG_FILE="/etc/monit/monitrc"