edvb

#!/usr/bin/env bash

# $: blindly copy commands from the internet

"$@"

edvb

#!/usr/bin/env bash

# calc: preform fast calculations on the go
#
# Tired of having to open a new terminal, run `bc`, type the calculation, only
# to exit right after seeing the answer? Suffer no longer! Now just type
# `calc 2+2` and instantly see the answer!

echo "$@" | bc -l

edvb

#!/usr/bin/env bash

# g: tiny git wrapper

if [[ $# -eq 0 ]]; then
	git status
else
	git "$@"
fi

edvb

#!/usr/bin/env bash

# tg: quickly tag files
#
# Rename files based on the given tag. For example `tg old file.txt` changes
# `file.txt` to `file-old.txt`. If the file already contains the suppied tag,
# it is removed.

if [[ $# != 2 ]]; then
  printf "usage: tg TAG FILE \n"

edvb

#!/usr/bin/env bash

# ED: change between $EDITORs
#
# Toggles your $EDITOR between your different editors.
# To install add `source path/to/ED.sh` to your shell's rc file.

ED() {
	local new
	if [[ "$1" != "" ]]; then

edvb

#!/usr/bin/env bash

# echk: functions to display shell error code

echk_color() {
    # set color depending on if the last command succeed or not
    if [[ $? -eq 0 ]]; then
        echo -ne "\033[0;32m"
        return 0
    else

edvb

#!/usr/bin/env bash

# pub: prepare post to be published
#
# Moves given draft into the posts directory and prefixes the filename with the
# date so that it is ready to be published.

if [[ $# == 0 || $# > 2 || ! -f "$1" ]]; then
  echo "usage: pub FILE [POSTDIR]"
  exit 1

edvb

#!/usr/bin/env python
"""
Convert clustal alignment files to grishin format for use in Rosetta
protein homology simulatoins

Author: Ed van Bruggen <edvb@uw.edu>
"""

import argparse
from argparse import RawTextHelpFormatter

edvb

#!/usr/bin/env bash

# body: print the body of a file
#
# if only two arguments are given print the file given by the first at the line
# number from the second. If a third argument is given print until that line.

if [[ $# == 2 ]]; then
  sed -n $2p $1
elif [[ $# == 3 ]]; then

edvb

#!/usr/bin/env bash

# sett: set title of a terminal
#
# Change the title of any terminal window. If no argument is given it sets the
# title to the working directory, otherwise the supplied TITLE is used.

title=$1
if [[ -z $title ]]; then
	title="$(basename "$PWD")"