eikehmueller

Traceback (most recent call last):
  File "driver.py", line 123, in <module>
    param_grid['ref_count_coarse'])
  File "/work/n02/n02/eike/firedrake/firedrake/mesh.py", line 1141, in __init__
    super(UnitIcosahedralSphereMesh, self).__init__(1, refinement_level, reorder
=reorder)  File "/work/n02/n02/eike/firedrake/firedrake/mesh.py", line 1131, in __init__
    super(IcosahedralSphereMesh, self).__init__(self.name, plex=plex, dim=3, reorder=reorder)  File "<string>", line 2, in __init__  File "/work/y07/y07/fdrake/PyOP2/lib/python2.7/site-packages/PyOP2-0.11.0_99_g54eb9ea_dirty-py2.7-linux-x86_64.egg/pyop2/profiling.py", line 197, in wrapper    return f(*args, **kwargs)  File "/work/n02/n02/eike/firedrake/firedrake/mesh.py", line 245, in __init__    distribute=distribute)  File "/work/n02/n02/eike/firedrake/firedrake/mesh.py", line 287, in _from_dmplex    dmplex.label_facets(self._plex, label_boundary=label_boundary)
TypeError: label_facets() takes no keyword arguments

eikehmueller

Started atTue Oct  7 16:58:33 BST 2014

Running helmholtz

PBS_JOBID = 2454494.sdb

Tue Oct  7 16:58:38 2014: [PE_37]: cpumask set to 1 cpu on nid02837, cpumask = 000000000000000000000000000000000010000000000000
Tue Oct  7 16:58:38 2014: [PE_0]: cpumask set to 1 cpu on nid02836, cpumask = 000000000000000000000000000000000000000000000001
Tue Oct  7 16:58:38 2014: [PE_9]: cpumask set to 1 cpu on nid02836, cpumask = 000000000000000000000000000000000000001000000000
Tue Oct  7 16:58:38 2014: [PE_1]: cpumask set to 1 cpu on nid02836, cpumask = 000000000000000000000000000000000000000000000010

eikehmueller

{'CPPFLAGS': '-DMPICH_IGNORE_CXX_SEEK', 'PE_LIBSCI_GENCOMPS_CRAY_interlagos': '83', 'PE_LIBSCI_DEFAULT_VOLATILE_PRGENV': 'CRAY GNU INTEL', 'RCLOCAL_BASEOPTS': 'true', 'PKG_CONFIG_PATH_DEFAULT': '/opt/cray/papi/5.3.2/lib64/pkgconfig', 'PYTHONPATH': '/work/n02/n02/eike//git_workspace/firedrake-helmholtzsolver/source:/work/n02/n02/eike//git_workspace//firedrake:/work/n02/n02/eike//git_workspace//PyOP2:/work/n02/n02/eike//git_workspace//pybench:/work/n02/n02/eike//git_workspace//firedrake-bench:/work/y07/y07/fdrake/firedrake/lib/python2.7/site-packages:/work/y07/y07/fdrake/PyOP2/lib/python2.7/site-packages:/work/y07/y07/fdrake/ufl/lib/python2.7/site-packages:/work/y07/y07/fdrake/scientificpython/lib/python2.7/site-packages:/work/y07/y07/fdrake/psutil/lib/python2.7/site-packages:/work/y07/y07/fdrake/mpi4py/lib/python2.7/site-packages:/work/y07/y07/fdrake/instant/lib/python2.7/site-packages:/work/y07/y07/fdrake/fiat/lib/python2.7/site-packages:/work/y07/y07/fdrake/ffc/lib/python2.7/site-packages:/work/y07/y07/fdrak

eikehmueller

        #include <mat_utils.h>
        #include <stdbool.h>
        #include <math.h>





            #include <immintrin.h>

eikehmueller

Started atThu Oct 16 13:47:45 BST 2014

Running helmholtz

PBS_JOBID = 2469907.sdb

[PE_23]: cpumask set to 1 cpu on nid02236, cpumask = 000000000000000000000000100000000000000000000000
[PE_12]: cpumask set to 1 cpu on nid02236, cpumask = 000000000000000000000000000000000001000000000000
[PE_9]: cpumask set to 1 cpu on nid02236, cpumask = 000000000000000000000000000000000000001000000000
[PE_10]: cpumask set to 1 cpu on nid02236, cpumask = 000000000000000000000000000000000000010000000000

eikehmueller

[New LWP 672]
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
Core was generated by `python /work/n02/n02/eike//git_workspace/firedrake-helmholtzsolver/source/drive'.
Program terminated with signal 6, Aborted.
#0  0x00002aaaab765b35 in raise () from /lib64/libc.so.6
To enable execution of this file add
	add-auto-load-safe-path /opt/gcc/4.9.1/snos/lib64/libstdc++.so.6.0.20-gdb.py
line to your configuration file "/home/n02/n02/eike/.gdbinit".
To completely disable this security protection add

eikehmueller

Started atFri Oct 17 10:47:21 BST 2014

Running helmholtz

PBS_JOBID = 2471242.sdb

[PE_22]: cpumask set to 1 cpu on nid02783, cpumask = 000000000000000000000000010000000000000000000000
[PE_11]: cpumask set to 1 cpu on nid02783, cpumask = 000000000000000000000000000000000000100000000000
[PE_10]: cpumask set to 1 cpu on nid02783, cpumask = 000000000000000000000000000000000000010000000000
[PE_9]: cpumask set to 1 cpu on nid02783, cpumask = 000000000000000000000000000000000000001000000000

eikehmueller

Started atFri Oct 17 14:18:34 BST 2014

Running helmholtz

PBS_JOBID = 2471610.sdb

[PE_7]: cpumask set to 1 cpu on nid00427, cpumask = 000000000000000000000000000000000000000010000000
[PE_15]: cpumask set to 1 cpu on nid00427, cpumask = 000000000000000000000000000000001000000000000000
[PE_23]: cpumask set to 1 cpu on nid00427, cpumask = 000000000000000000000000100000000000000000000000
[PE_8]: cpumask set to 1 cpu on nid00427, cpumask = 000000000000000000000000000000000000000100000000

eikehmueller

Started atSat Oct 18 10:38:39 BST 2014

Running helmholtz

PBS_JOBID = 2472391.sdb

[PE_71]: cpumask set to 1 cpu on nid02494, cpumask = 000000000000000000000000100000000000000000000000
[PE_59]: cpumask set to 1 cpu on nid02494, cpumask = 000000000000000000000000000000000000100000000000
[PE_70]: cpumask set to 1 cpu on nid02494, cpumask = 000000000000000000000000010000000000000000000000
[PE_48]: cpumask set to 1 cpu on nid02494, cpumask = 000000000000000000000000000000000000000000000001

eikehmueller

    def solve_petsc(self,r_phi,r_u):
        '''Solve Helmholtz system using PETSc solver.

        Solve the mixed Helmholtz system for right hand sides :math:`r_\phi`
        and :math:`r_u` by using the PETSc solvers with suitable Schur
        complement preconditioner.

        :arg r_phi: right hand side for pressure equation, function in
            :math:`DG` space.
        :arg r_u: right hand side for velocity equation, function in