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Eike Hermann Mueller eikehmueller

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eikehmueller / gist:1b28fad81a0b6013280d
Created October 22, 2014 16:45
eikemueller@138-38-186-93 $ python extruded.py
Traceback (most recent call last):
File "extruded.py", line 4, in <module>
from firedrake import *
File "/Users/eikemueller/PostDocBath/EllipticSolvers/firedrake/firedrake/__init__.py", line 19, in <module>
del ufl.core.expr.Expr.__del__
AttributeError: 'module' object has no attribute 'core'
@eikehmueller
eikehmueller / higher order
Last active August 29, 2015 14:07
Started atTue Oct 21 09:45:44 BST 2014
Running helmholtz
PBS_JOBID = 2476329.sdb
[PE_0]: cpumask set to 1 cpu on nid01871, cpumask = 000000000000000000000000000000000000000000000001
+------------------------+
! Mixed Helmholtz solver !
+------------------------+
@eikehmueller
eikehmueller / Code
Last active August 29, 2015 14:07
def solve_petsc(self,r_phi,r_u):
'''Solve Helmholtz system using PETSc solver.
Solve the mixed Helmholtz system for right hand sides :math:`r_\phi`
and :math:`r_u` by using the PETSc solvers with suitable Schur
complement preconditioner.
:arg r_phi: right hand side for pressure equation, function in
:math:`DG` space.
:arg r_u: right hand side for velocity equation, function in
@eikehmueller
eikehmueller / 192 cores, Crash #1 (cleared PyOP2+firedrake cache, PYOP2_DEBUG=0)
Last active August 29, 2015 14:07
Started atSat Oct 18 10:38:39 BST 2014
Running helmholtz
PBS_JOBID = 2472391.sdb
[PE_71]: cpumask set to 1 cpu on nid02494, cpumask = 000000000000000000000000100000000000000000000000
[PE_59]: cpumask set to 1 cpu on nid02494, cpumask = 000000000000000000000000000000000000100000000000
[PE_70]: cpumask set to 1 cpu on nid02494, cpumask = 000000000000000000000000010000000000000000000000
[PE_48]: cpumask set to 1 cpu on nid02494, cpumask = 000000000000000000000000000000000000000000000001
@eikehmueller
eikehmueller / gist:b919986039a539836408
Created October 17, 2014 14:31
Started atFri Oct 17 14:18:34 BST 2014
Running helmholtz
PBS_JOBID = 2471610.sdb
[PE_7]: cpumask set to 1 cpu on nid00427, cpumask = 000000000000000000000000000000000000000010000000
[PE_15]: cpumask set to 1 cpu on nid00427, cpumask = 000000000000000000000000000000001000000000000000
[PE_23]: cpumask set to 1 cpu on nid00427, cpumask = 000000000000000000000000100000000000000000000000
[PE_8]: cpumask set to 1 cpu on nid00427, cpumask = 000000000000000000000000000000000000000100000000
@eikehmueller
eikehmueller / gist:deda655665fadfb61d46
Created October 17, 2014 09:59
Started atFri Oct 17 10:47:21 BST 2014
Running helmholtz
PBS_JOBID = 2471242.sdb
[PE_22]: cpumask set to 1 cpu on nid02783, cpumask = 000000000000000000000000010000000000000000000000
[PE_11]: cpumask set to 1 cpu on nid02783, cpumask = 000000000000000000000000000000000000100000000000
[PE_10]: cpumask set to 1 cpu on nid02783, cpumask = 000000000000000000000000000000000000010000000000
[PE_9]: cpumask set to 1 cpu on nid02783, cpumask = 000000000000000000000000000000000000001000000000
@eikehmueller
eikehmueller / gist:1b84a17d726e18cc8e0e
Created October 16, 2014 13:40
[New LWP 672]
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
Core was generated by `python /work/n02/n02/eike//git_workspace/firedrake-helmholtzsolver/source/drive'.
Program terminated with signal 6, Aborted.
#0 0x00002aaaab765b35 in raise () from /lib64/libc.so.6
To enable execution of this file add
add-auto-load-safe-path /opt/gcc/4.9.1/snos/lib64/libstdc++.so.6.0.20-gdb.py
line to your configuration file "/home/n02/n02/eike/.gdbinit".
To completely disable this security protection add
@eikehmueller
eikehmueller / gist:8b8576d94970be733693
Created October 16, 2014 12:52
Started atThu Oct 16 13:47:45 BST 2014
Running helmholtz
PBS_JOBID = 2469907.sdb
[PE_23]: cpumask set to 1 cpu on nid02236, cpumask = 000000000000000000000000100000000000000000000000
[PE_12]: cpumask set to 1 cpu on nid02236, cpumask = 000000000000000000000000000000000001000000000000
[PE_9]: cpumask set to 1 cpu on nid02236, cpumask = 000000000000000000000000000000000000001000000000
[PE_10]: cpumask set to 1 cpu on nid02236, cpumask = 000000000000000000000000000000000000010000000000
@eikehmueller
eikehmueller / gist:6b3e7e0c054f50fbcce8
Created October 16, 2014 10:14
#include <mat_utils.h>
#include <stdbool.h>
#include <math.h>
#include <immintrin.h>
@eikehmueller
eikehmueller / Called from inside compilation py
Last active August 29, 2015 14:07
os.environ
{'CPPFLAGS': '-DMPICH_IGNORE_CXX_SEEK', 'PE_LIBSCI_GENCOMPS_CRAY_interlagos': '83', 'PE_LIBSCI_DEFAULT_VOLATILE_PRGENV': 'CRAY GNU INTEL', 'RCLOCAL_BASEOPTS': 'true', 'PKG_CONFIG_PATH_DEFAULT': '/opt/cray/papi/5.3.2/lib64/pkgconfig', 'PYTHONPATH': '/work/n02/n02/eike//git_workspace/firedrake-helmholtzsolver/source:/work/n02/n02/eike//git_workspace//firedrake:/work/n02/n02/eike//git_workspace//PyOP2:/work/n02/n02/eike//git_workspace//pybench:/work/n02/n02/eike//git_workspace//firedrake-bench:/work/y07/y07/fdrake/firedrake/lib/python2.7/site-packages:/work/y07/y07/fdrake/PyOP2/lib/python2.7/site-packages:/work/y07/y07/fdrake/ufl/lib/python2.7/site-packages:/work/y07/y07/fdrake/scientificpython/lib/python2.7/site-packages:/work/y07/y07/fdrake/psutil/lib/python2.7/site-packages:/work/y07/y07/fdrake/mpi4py/lib/python2.7/site-packages:/work/y07/y07/fdrake/instant/lib/python2.7/site-packages:/work/y07/y07/fdrake/fiat/lib/python2.7/site-packages:/work/y07/y07/fdrake/ffc/lib/python2.7/site-packages:/work/y07/y07/fdrak