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empet/small-multiple-us-map.ipynb

Created January 12, 2022 19:15
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small-multiple-us-map.ipynb
{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## <center>Small multiple US map<br>2021 Daily vaccinations per million in each state </center> "
]
},
{
"cell_type": "code",
"execution_count": 2,
"metadata": {},
"outputs": [
{
"data": {
"application/vnd.webio.node+json": {
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"text/html": [
"<div style=\"padding: 1em; background-color: #f8d6da; border: 1px solid #f5c6cb; font-weight: bold;\">\n",
"<p>The WebIO Jupyter extension was not detected. See the\n",
"<a href=\"https://juliagizmos.github.io/WebIO.jl/latest/providers/ijulia/\" target=\"_blank\">\n",
" WebIO Jupyter integration documentation\n",
"</a>\n",
"for more information.\n",
"</div>\n"
],
"text/plain": [
"WebIO._IJuliaInit()"
]
},
"metadata": {
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"kernelId": "efd1813e-e961-42c5-8025-33c5a26f7756"
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{
"data": {
"text/plain": [
"symbol_dict (generic function with 1 method)"
]
},
"execution_count": 2,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"using CSV, DataFrames, JSON, HTTP, PlotlyJS\n",
"\n",
"#recursively merge kw-dicts; it is used here for merging nested dicts\n",
"recursive_merge(d::AbstractDict...) = merge(recursive_merge, d...)\n",
"recursive_merge(x...) = x[end]\n",
"\n",
"#convert a Dict(String, Any) to Dict(Symbol, Any)\n",
"f(x) = x\n",
"f(d::Dict) = Dict{Symbol, Any}(Symbol(k) => f(v) for (k, v) in d)\n",
"symbol_dict(d::Dict) = f(d)"
]
},
{
"cell_type": "code",
"execution_count": 3,
"metadata": {},
"outputs": [],
"source": [
"url1 =\"https://raw.githubusercontent.com/empet/Datasets/master/US-map-lattice/us-states-facets.json\"\n",
"result = HTTP.request(\"GET\", url1)\n",
"us_states = JSON.parse(String(result.body))\n",
"\n",
"url2 = \"https://raw.githubusercontent.com/empet/Datasets/master/US-map-lattice/us_state_vaccinations.csv\"\n",
"df = CSV.File(HTTP.get(url2).body) |> DataFrame;\n",
"gd = groupby(df,:location);"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"`keys(gd)` contains more US locations than the number the states (see `keys(us_states)`). Hence we are selecting only groups corresponding to\n",
"states defined as keys in the dict `us_states`."
]
},
{
"cell_type": "code",
"execution_count": 4,
"metadata": {},
"outputs": [
{
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domain\",\"showarrow\":false,\"text\":\"<b>Pa<\\/b>\",\"xref\":\"x41 domain\",\"x\":1},{\"y\":1,\"yref\":\"y71 domain\",\"showarrow\":false,\"text\":\"<b>La<\\/b>\",\"xref\":\"x71 domain\",\"x\":1},{\"y\":1,\"yref\":\"y70 domain\",\"showarrow\":false,\"text\":\"<b>Okla<\\/b>\",\"xref\":\"x70 domain\",\"x\":1},{\"y\":1,\"yref\":\"y52 domain\",\"showarrow\":false,\"text\":\"<b>Va<\\/b>\",\"xref\":\"x52 domain\",\"x\":1},{\"y\":1,\"yref\":\"y78 domain\",\"showarrow\":false,\"text\":\"<b>Hawaii<\\/b>\",\"xref\":\"x78 domain\",\"x\":1},{\"y\":1,\"yref\":\"y46 domain\",\"showarrow\":false,\"text\":\"<b>Utah<\\/b>\",\"xref\":\"x46 domain\",\"x\":1},{\"y\":1,\"yref\":\"y64 domain\",\"showarrow\":false,\"text\":\"<b>D.C.<\\/b>\",\"xref\":\"x64 domain\",\"x\":1},{\"y\":1,\"yref\":\"y26 domain\",\"showarrow\":false,\"text\":\"<b>N.D.<\\/b>\",\"xref\":\"x26 domain\",\"x\":1},{\"y\":1,\"yref\":\"y34 domain\",\"showarrow\":false,\"text\":\"<b>Ore<\\/b>\",\"xref\":\"x34 domain\",\"x\":1},{\"y\":1,\"yref\":\"y42 domain\",\"showarrow\":false,\"text\":\"<b>N.J.<\\/b>\",\"xref\":\"x42 domain\",\"x\":1},{\"y\":1,\"yref\":\"y72 domain\",\"showarrow\":false,\"text\":\"<b>Miss<\\/b>\",\"xref\":\"x72 domain\",\"x\":1},{\"y\":1,\"yref\":\"y44 domain\",\"showarrow\":false,\"text\":\"<b>R.I.<\\/b>\",\"xref\":\"x44 domain\",\"x\":1},{\"y\":1,\"yref\":\"y51 domain\",\"showarrow\":false,\"text\":\"<b>W.Va<\\/b>\",\"xref\":\"x51 domain\",\"x\":1},{\"y\":1,\"yref\":\"y58 domain\",\"showarrow\":false,\"text\":\"<b>N.M.<\\/b>\",\"xref\":\"x58 domain\",\"x\":1},{\"y\":1,\"yref\":\"y25 domain\",\"showarrow\":false,\"text\":\"<b>Mont<\\/b>\",\"xref\":\"x25 domain\",\"x\":1},{\"y\":1,\"yref\":\"y24 domain\",\"showarrow\":false,\"text\":\"<b>Idaho<\\/b>\",\"xref\":\"x24 domain\",\"x\":1},{\"y\":1,\"yref\":\"y23 domain\",\"showarrow\":false,\"text\":\"<b>Wash<\\/b>\",\"xref\":\"x23 domain\",\"x\":1}],\"yaxis20\":{\"domain\":[0.7590000000000001,0.8735000000000002],\"anchor\":\"x20\"},\"yaxis78\":{\"showticklabels\":false,\"range\":[0.0,22621.0],\"domain\":[0.0,0.1145],\"anchor\":\"x78\"},\"yaxis32\":{\"showticklabels\":false,\"range\":[0.0,22621.0],\"domain\":[0.6325000000000001,0.7470000000000001],\"anchor\":\"x32\"},\"yaxis23\":{\"showticklabels\":false,\"range\":[0.0,22621.0],\"domain\":[0.6325000000000001,0.7470000000000001],\"anchor\":\"x23\"},\"yaxis30\":{\"domain\":[0.6325000000000001,0.7470000000000001],\"anchor\":\"x30\"},\"yaxis80\":{\"domain\":[0.0,0.1145],\"anchor\":\"x80\"},\"yaxis35\":{\"showticklabels\":false,\"range\":[0.0,22621.0],\"domain\":[0.506,0.6205],\"anchor\":\"x35\"},\"xaxis39\":{\"showticklabels\":false,\"domain\":[0.46,0.54],\"anchor\":\"y39\"},\"xaxis30\":{\"domain\":[0.644,0.724],\"anchor\":\"y30\"},\"xaxis83\":{\"domain\":[0.46,0.54],\"anchor\":\"y83\"},\"xaxis40\":{\"showticklabels\":false,\"domain\":[0.552,0.632],\"anchor\":\"y40\"},\"xaxis67\":{\"domain\":[0.0,0.08],\"anchor\":\"y67\"},\"xaxis69\":{\"domain\":[0.184,0.264],\"anchor\":\"y69\"},\"xaxis32\":{\"showticklabels\":false,\"domain\":[0.828,0.9079999999999999],\"anchor\":\"y32\"},\"title\":{\"text\":\"US 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12-30-2021\",\"x\":0.5},\"yaxis68\":{\"domain\":[0.1265,0.241],\"anchor\":\"x68\"},\"xaxis10\":{\"domain\":[0.828,0.9079999999999999],\"anchor\":\"y10\"},\"yaxis36\":{\"showticklabels\":false,\"range\":[0.0,22621.0],\"domain\":[0.506,0.6205],\"anchor\":\"x36\"},\"yaxis55\":{\"domain\":[0.37950000000000006,0.49400000000000005],\"anchor\":\"x55\"},\"yaxis31\":{\"showticklabels\":false,\"range\":[0.0,22621.0],\"domain\":[0.6325000000000001,0.7470000000000001],\"anchor\":\"x31\"},\"xaxis68\":{\"domain\":[0.092,0.172],\"anchor\":\"y68\"},\"xaxis66\":{\"domain\":[0.9199999999999999,0.9999999999999999],\"anchor\":\"y66\"},\"xaxis33\":{\"domain\":[0.9199999999999999,0.9999999999999999],\"anchor\":\"y33\"},\"yaxis2\":{\"domain\":[0.8855000000000001,1.0],\"anchor\":\"x2\"},\"xaxis3\":{\"domain\":[0.184,0.264],\"anchor\":\"y3\"},\"yaxis12\":{\"domain\":[0.7590000000000001,0.8735000000000002],\"anchor\":\"x12\"},\"xaxis5\":{\"domain\":[0.368,0.448],\"anchor\":\"y5\"},\"yaxis63\":{\"showticklabels\":false,\"range\":[0.0,22621.0],\"domain\":[0.253,0.3675],\"anchor\":\"x63\"},\"xaxis88\":{\"domain\":[0.9199999999999999,0.9999999999999999],\"anchor\":\"y88\"},\"yaxis41\":{\"showticklabels\":false,\"range\":[0.0,22621.0],\"domain\":[0.506,0.6205],\"anchor\":\"x41\"},\"yaxis3\":{\"domain\":[0.8855000000000001,1.0],\"anchor\":\"x3\"},\"yaxis49\":{\"showticklabels\":false,\"range\":[0.0,22621.0],\"domain\":[0.37950000000000006,0.49400000000000005],\"anchor\":\"x49\"},\"xaxis55\":{\"domain\":[0.9199999999999999,0.9999999999999999],\"anchor\":\"y55\"},\"xaxis85\":{\"domain\":[0.644,0.724],\"anchor\":\"y85\"},\"yaxis9\":{\"domain\":[0.8855000000000001,1.0],\"anchor\":\"x9\"},\"yaxis24\":{\"showticklabels\":false,\"range\":[0.0,22621.0],\"domain\":[0.6325000000000001,0.7470000000000001],\"anchor\":\"x24\"},\"yaxis46\":{\"showticklabels\":false,\"range\":[0.0,22621.0],\"domain\":[0.37950000000000006,0.49400000000000005],\"anchor\":\"x46\"},\"yaxis19\":{\"domain\":[0.7590000000000001,0.8735000000000002],\"anchor\":\"x19\"},\"yaxis88\":{\"domain\":[0.0,0.1145],\"anchor\":\"x88\"},\"yaxis66\":{\"domain\":[0.253,0.3675],\"anchor\":\"x66\"},\"xaxis29\":{\"showticklabels\":false,\"domain\":[0.552,0.632],\"anchor\":\"y29\"},\"xaxis77\":{\"domain\":[0.9199999999999999,0.9999999999999999],\"anchor\":\"y77\"},\"xaxis54\":{\"showticklabels\":false,\"domain\":[0.828,0.9079999999999999],\"anchor\":\"y54\"},\"xaxis46\":{\"showticklabels\":false,\"domain\":[0.092,0.172],\"anchor\":\"y46\"},\"xaxis2\":{\"domain\":[0.092,0.172],\"anchor\":\"y2\"},\"xaxis21\":{\"showticklabels\":false,\"domain\":[0.828,0.9079999999999999],\"anchor\":\"y21\"},\"xaxis45\":{\"showticklabels\":false,\"domain\":[0.0,0.08],\"anchor\":\"y45\"},\"xaxis87\":{\"domain\":[0.828,0.9079999999999999],\"anchor\":\"y87\"}}]}}},\"children\":[{\"props\":{\"id\":\"plot-5adbb28d-4020-45d4-9686-14142d1e8da4\"},\"nodeType\":\"DOM\",\"type\":\"node\",\"instanceArgs\":{\"namespace\":\"html\",\"tag\":\"div\"},\"children\":[]}]},\n",
" window,\n",
" );\n",
" })()\n",
" </script>\n",
"</div>\n"
],
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"]\n",
"\n",
"layout: \"layout with fields annotations, font, height, margin, showlegend, template, title, width, xaxis, xaxis10, xaxis11, xaxis12, xaxis13, xaxis14, xaxis15, xaxis16, xaxis17, xaxis18, xaxis19, xaxis2, xaxis20, xaxis21, xaxis22, xaxis23, xaxis24, xaxis25, xaxis26, xaxis27, xaxis28, xaxis29, xaxis3, xaxis30, xaxis31, xaxis32, xaxis33, xaxis34, xaxis35, xaxis36, xaxis37, xaxis38, xaxis39, xaxis4, xaxis40, xaxis41, xaxis42, xaxis43, xaxis44, xaxis45, xaxis46, xaxis47, xaxis48, xaxis49, xaxis5, xaxis50, xaxis51, xaxis52, xaxis53, xaxis54, xaxis55, xaxis56, xaxis57, xaxis58, xaxis59, xaxis6, xaxis60, xaxis61, xaxis62, xaxis63, xaxis64, xaxis65, xaxis66, xaxis67, xaxis68, xaxis69, xaxis7, xaxis70, xaxis71, xaxis72, xaxis73, xaxis74, xaxis75, xaxis76, xaxis77, xaxis78, xaxis79, xaxis8, xaxis80, xaxis81, xaxis82, xaxis83, xaxis84, xaxis85, xaxis86, xaxis87, xaxis88, xaxis9, yaxis, yaxis10, yaxis11, yaxis12, yaxis13, yaxis14, yaxis15, yaxis16, yaxis17, yaxis18, yaxis19, yaxis2, yaxis20, yaxis21, yaxis22, yaxis23, yaxis24, yaxis25, yaxis26, yaxis27, yaxis28, yaxis29, yaxis3, yaxis30, yaxis31, yaxis32, yaxis33, yaxis34, yaxis35, yaxis36, yaxis37, yaxis38, yaxis39, yaxis4, yaxis40, yaxis41, yaxis42, yaxis43, yaxis44, yaxis45, yaxis46, yaxis47, yaxis48, yaxis49, yaxis5, yaxis50, yaxis51, yaxis52, yaxis53, yaxis54, yaxis55, yaxis56, yaxis57, yaxis58, yaxis59, yaxis6, yaxis60, yaxis61, yaxis62, yaxis63, yaxis64, yaxis65, yaxis66, yaxis67, yaxis68, yaxis69, yaxis7, yaxis70, yaxis71, yaxis72, yaxis73, yaxis74, yaxis75, yaxis76, yaxis77, yaxis78, yaxis79, yaxis8, yaxis80, yaxis81, yaxis82, yaxis83, yaxis84, yaxis85, yaxis86, yaxis87, yaxis88, and yaxis9\"\n",
"\n"
]
},
"execution_count": 4,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"nr = 8\n",
"nc = 11\n",
"title = \"US states<br>Daily vaccinations per million, between 01-12-2021 - 12-30-2021\"\n",
"Y = []\n",
"fig = make_subplots(rows=nr, cols=nc, horizontal_spacing=0.012, vertical_spacing=0.012)\n",
"year_dates = gd[1][!, :date];\n",
"for key in keys(us_states)\n",
" ax = us_states[key][\"axis\"]\n",
" r = (ax-1) ÷ nc + 1\n",
" c = mod(ax-1, nc) + 1\n",
" y = gd[(key, )][!, :daily_vaccinations_per_million]\n",
" append!(Y, y)\n",
" add_trace!(fig, scatter(x=year_dates, \n",
" y=y, mode=\"lines\", line_width=1,\n",
" line_color=\"#cd5c5c\", name=key), row=r, col=c)\n",
"end \n",
"ymax = maximum(Y[findall(!ismissing, Y)])\n",
" \n",
"state_axis = [Dict(\"xaxis$(us_states[key][\"axis\"])\" => Dict(\"showticklabels\"=>false), \n",
" \"yaxis$(us_states[key][\"axis\"])\" => Dict(\"showticklabels\"=>false,\n",
" \"range\"=>[0, ymax]))\n",
" for key in keys(us_states) if us_states[key][\"axis\"] !=1]\n",
"push!(state_axis, Dict(\"xaxis\" => Dict(\"showticklabels\"=>false), \n",
" \"yaxis\" => Dict(\"showticklabels\"=>false,\n",
" \"range\"=>[0, ymax])\n",
" ))\n",
"\n",
"layt_axes = recursive_merge(state_axis...);\n",
"new_layt = recursive_merge([fig.plot.layout.fields, symbol_dict(layt_axes)]...)\n",
"update!(fig, layout=Layout(new_layt))\n",
"\n",
"annotations = []\n",
"for key in keys(us_states)\n",
" j = us_states[key][\"axis\"]\n",
" if j != 1\n",
" push!(annotations, attr(x=1,\n",
" y=1,\n",
" xref=\"x$j domain\",\n",
" yref=\"y$j domain\",\n",
" text=\"<b>$(us_states[key][\"abbrev\"])</b>\",\n",
" showarrow=false))\n",
" else\n",
" push!(annotations, attr(x=1,\n",
" y=1,\n",
" xref=\"x domain\",\n",
" yref=\"y domain\",\n",
" text=\"<b>$(us_states[key][\"abbrev\"])</b>\",\n",
" showarrow=false))\n",
" end\n",
"end\n",
"relayout!(fig, title_text=title, title_x=0.5,\n",
" width=800, height=600, showlegend=false, \n",
" font_size=9, annotations=annotations)\n",
"fig"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": []
}
],
"metadata": {
"@webio": {
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"kernelspec": {
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"name": "julia",
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},
"nbformat": 4,
"nbformat_minor": 4
}
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