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precision = Precision()
precision.update_state(y_train, y_train_pred)
precision.result().numpy()

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from sklearn.metrics import confusion_matrix
import seaborn as sns

# notice the threshold
def plot_cm(labels: numpy.ndarray, predictions: numpy.ndarray, p: float=0.5) -> ():
    cm = confusion_matrix(labels, predictions > p)
    # you can normalize the confusion matrix

    plt.figure(figsize=(5,5))
    sns.heatmap(cm, annot=True, fmt="d")

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# Evaluate the model on the test data using `evaluate`
print("Evaluate on test data")
score_test = model.evaluate(test_ds.batch(batch_size))
for name, value in zip(model.metrics_names, score_test):
    print(name, ': ', value)

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def plot_metrics(history: History) -> ():
    metrics =  ['loss', 'precision', 'recall', 'auc', 'tp', 'sensitivity']
    for n, metric in enumerate(metrics):
        name = metric.replace("_"," ").capitalize()
        plt.subplot(3, 2, n+1)  # adjust according to metrics
        plt.plot(history.epoch,  history.history[metric], color=colors[0], label='Train')
        plt.plot(history.epoch, history.history['val_'+metric],
                 color=colors[0], linestyle="--", label='Val')
        plt.xlabel('Epoch')
        plt.ylabel(name)

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import matplotlib.pyplot as plt
from matplotlib import rcParams

rcParams['figure.figsize'] = (12, 10)
colors = plt.rcParams['axes.prop_cycle'].by_key()['color']

def plot_log_loss(history: History, title_label: str, n: int) -> ():
    # Use a log scale to show the wide range of values.
    plt.semilogy(history.epoch,  history.history['loss'],
               color=colors[n], label='Train '+title_label)

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batch_size = 64

"""
Training the model for 60 epochs using our dataset.
The batch size (64) is the same for the validation data.
Only 1 callback was used, but could be more like TensorBoard, ModelCheckpoint, etc.
"""
history = model.fit(train_ds.batch(batch_size=batch_size),
                    epochs=60,
                    validation_data=validation_ds.batch(batch_size=batch_size),

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from tensorflow.keras.callbacks import EarlyStopping

"""
This callback will stop the training when there is no improvement in the validation accuracy across epochs
"""
early_callback = EarlyStopping(monitor='val_auc', 
                               verbose=1,
                               patience=10,
                               mode='max',
                               restore_best_weights=True)

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from tensorflow.keras.losses import BinaryCrossentropy
from tensorflow.keras.optimizers import Adam
from tensorflow.keras.metrics import TruePositives, FalsePositives, TrueNegatives, FalseNegatives, BinaryAccuracy, Precision, Recall, AUC
from tensorflow.keras.metrics import SpecificityAtSensitivity

"""
Definition of metrics commonly used on medical imaging classification, segmentation, and localization problems.
The metrics will appear on each iteration of the training process to monitor the progress of our design.
"""
METRICS = [

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from tensorflow.keras.utils import plot_model

plot_model(model, 'my-CNNmodel.png', show_shapes=True)

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from tensorflow.keras import Model
from tensorflow.keras.layers import Input, Convolution2D, MaxPool2D, BatchNormalization, Flatten, Dropout, Dense
from tensorflow.keras.regularizers import l2
from tensorflow.keras.activations import relu, sigmoid
from tensorflow.keras.initializers import GlorotNormal

# this configuration uses backend.set_image_data_format('channels_first')

"""
This design creates the same network than before but using the layer by layer configuration.