Created
January 4, 2017 16:14
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(partial) EasyBuild log for failed build of /tmp/eb-B3gTBZ/files_pr3968/h/hwloc/hwloc-1.11.5-GCC-6.3.0-2.27.eb (PR #3968)
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| == 2017-01-04 17:13:57,120 easyblock.py:261 INFO This is EasyBuild 3.0.2 (framework: 3.0.2, easyblocks: 3.0.2) on host node2519.golett.os. | |
| == 2017-01-04 17:13:57,120 easyblock.py:267 INFO This is easyblock ConfigureMake from module easybuild.easyblocks.generic.configuremake (/user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyblocks-3.0.2-py2.6.egg/easybuild/easyblocks/generic/configuremake.pyo) | |
| == 2017-01-04 17:13:57,120 easyblock.py:753 INFO Build dir set to /tmp/vsc40023/easybuild_build/hwloc/1.11.5/GCC-6.3.0-2.27 | |
| == 2017-01-04 17:13:57,120 config.py:423 DEBUG software install path as specified by 'installpath' and 'subdir_software': /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software | |
| == 2017-01-04 17:13:57,120 easyconfig.py:1650 DEBUG Determining software installation subdir for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1378a90> | |
| == 2017-01-04 17:13:57,120 easyconfig.py:1656 DEBUG Obtained subdir hwloc/1.11.5-GCC-6.3.0-2.27 | |
| == 2017-01-04 17:13:57,121 easyblock.py:792 INFO Software install dir set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/hwloc/1.11.5-GCC-6.3.0-2.27 | |
| == 2017-01-04 17:13:57,121 config.py:423 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules | |
| == 2017-01-04 17:13:57,121 easyblock.py:797 INFO Module install dir set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all | |
| == 2017-01-04 17:13:57,121 easyblock.py:246 INFO Init completed for application name hwloc version 1.11.5 | |
| == 2017-01-04 17:13:57,121 easyblock.py:2477 INFO Obtained application instance of for hwloc (easyblock: ConfigureMake) | |
| == 2017-01-04 17:13:57,121 easyblock.py:2490 DEBUG Skip set to False | |
| == 2017-01-04 17:13:57,121 build_log.py:216 INFO building and installing hwloc/1.11.5-GCC-6.3.0-2.27... | |
| == 2017-01-04 17:13:57,121 easyblock.py:2263 DEBUG Not skipping fetch step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True | |
| == 2017-01-04 17:13:57,122 build_log.py:216 INFO fetching files... | |
| == 2017-01-04 17:13:57,122 easyblock.py:2271 INFO Starting fetch step | |
| == 2017-01-04 17:13:57,122 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1378a90> | |
| == 2017-01-04 17:13:57,122 templates.py:175 DEBUG version found in easyconfig is 1.11.5 | |
| == 2017-01-04 17:13:57,122 templates.py:219 DEBUG name: github_account, config: None | |
| == 2017-01-04 17:13:57,122 templates.py:219 DEBUG name: name, config: hwloc | |
| == 2017-01-04 17:13:57,123 templates.py:219 DEBUG name: version, config: 1.11.5 | |
| == 2017-01-04 17:13:57,123 templates.py:219 DEBUG name: versionsuffix, config: | |
| == 2017-01-04 17:13:57,123 templates.py:219 DEBUG name: versionprefix, config: | |
| == 2017-01-04 17:13:57,123 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1378a90> | |
| == 2017-01-04 17:13:57,123 templates.py:175 DEBUG version found in easyconfig is 1.11.5 | |
| == 2017-01-04 17:13:57,123 templates.py:219 DEBUG name: github_account, config: None | |
| == 2017-01-04 17:13:57,123 templates.py:219 DEBUG name: name, config: hwloc | |
| == 2017-01-04 17:13:57,123 templates.py:219 DEBUG name: version, config: 1.11.5 | |
| == 2017-01-04 17:13:57,123 templates.py:219 DEBUG name: versionsuffix, config: | |
| == 2017-01-04 17:13:57,124 templates.py:219 DEBUG name: versionprefix, config: | |
| == 2017-01-04 17:13:57,124 easyblock.py:2274 INFO Running method fetch_step part of step fetch | |
| == 2017-01-04 17:13:57,124 easyblock.py:1446 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
| == 2017-01-04 17:13:57,124 filetools.py:237 INFO Command eb found at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/bin/eb | |
| == 2017-01-04 17:13:57,124 tools.py:261 DEBUG Also considering installation prefix /user/data/gent/vsc400/vsc40023/easybuild_easy_installed... | |
| == 2017-01-04 17:13:57,124 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.0.2-py2.6.egg/easybuild/easyconfigs/easybuild/easyconfigs | |
| == 2017-01-04 17:13:57,124 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-B3gTBZ/files_pr3968/easybuild/easyconfigs | |
| == 2017-01-04 17:13:57,125 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/site-packages/git/ext/gitdb/easybuild/easyconfigs | |
| == 2017-01-04 17:13:57,125 tools.py:266 DEBUG Checking for easybuild/easyconfigs at easybuild/easyconfigs | |
| == 2017-01-04 17:13:57,125 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/vsc_base-2.5.5-py2.7.egg/easybuild/easyconfigs | |
| == 2017-01-04 17:13:57,125 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/vsc_install-0.10.20-py2.7.egg/easybuild/easyconfigs | |
| == 2017-01-04 17:13:57,125 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_framework-3.0.2.dev0-py2.6.egg/easybuild/easyconfigs | |
| == 2017-01-04 17:13:57,125 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyblocks-3.0.2-py2.6.egg/easybuild/easyconfigs | |
| == 2017-01-04 17:13:57,125 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.0.2-py2.6.egg/easybuild/easyconfigs | |
| == 2017-01-04 17:13:57,125 tools.py:270 DEBUG Added /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.0.2-py2.6.egg/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
| == 2017-01-04 17:13:57,126 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /apps/gent/SL6/sandybridge/software/MySQLdb/1.2.5-intel-2016a-Python-2.7.11/lib/python2.7/site-packages/MySQL_python-1.2.5-py2.7-linux-x86_64.egg/easybuild/easyconfigs | |
| == 2017-01-04 17:13:57,126 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /apps/gent/SL6/sandybridge/software/psutil/3.4.2-intel-2016a-Python-2.7.11/lib/python2.7/site-packages/psutil-3.4.2-py2.7-linux-x86_64.egg/easybuild/easyconfigs | |
| == 2017-01-04 17:13:57,126 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/keyring/lib/python2.7/site-packages/keyring-3.8/easybuild/easyconfigs | |
| == 2017-01-04 17:13:57,126 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild/easyconfigs | |
| == 2017-01-04 17:13:57,126 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild/easyconfigs | |
| == 2017-01-04 17:13:57,126 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python27.zip/easybuild/easyconfigs | |
| == 2017-01-04 17:13:57,126 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/easybuild/easyconfigs | |
| == 2017-01-04 17:13:57,126 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/plat-linux2/easybuild/easyconfigs | |
| == 2017-01-04 17:13:57,127 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-tk/easybuild/easyconfigs | |
| == 2017-01-04 17:13:57,127 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-old/easybuild/easyconfigs | |
| == 2017-01-04 17:13:57,127 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-dynload/easybuild/easyconfigs | |
| == 2017-01-04 17:13:57,127 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/lib/python2.7/site-packages/easybuild/easyconfigs | |
| == 2017-01-04 17:13:57,127 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/easybuild/easyconfigs | |
| == 2017-01-04 17:13:57,127 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/pbs/easybuild/easyconfigs | |
| == 2017-01-04 17:13:57,127 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/site-packages/easybuild/easyconfigs | |
| == 2017-01-04 17:13:57,127 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/gitdb/ext/smmap/easybuild/easyconfigs | |
| == 2017-01-04 17:13:57,128 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/easybuild/easyconfigs | |
| == 2017-01-04 17:13:57,130 easyblock.py:590 INFO Found file hwloc-1.11.5.tar.gz at /user/data/gent/vsc400/vsc40023/EasyBuild/sources/h/hwloc/hwloc-1.11.5.tar.gz | |
| == 2017-01-04 17:13:57,131 easyblock.py:338 DEBUG File /user/data/gent/vsc400/vsc40023/EasyBuild/sources/h/hwloc/hwloc-1.11.5.tar.gz found for source hwloc-1.11.5.tar.gz | |
| == 2017-01-04 17:13:57,131 easyblock.py:350 INFO Added sources: [{'path': '/user/data/gent/vsc400/vsc40023/EasyBuild/sources/h/hwloc/hwloc-1.11.5.tar.gz', 'cmd': None, 'finalpath': '/tmp/vsc40023/easybuild_build/hwloc/1.11.5/GCC-6.3.0-2.27', 'name': 'hwloc-1.11.5.tar.gz', 'checksum': None}] | |
| == 2017-01-04 17:13:57,131 easyblock.py:1487 INFO no patches provided | |
| == 2017-01-04 17:13:57,131 filetools.py:514 DEBUG Using blocksize 16777216 for calculating the checksum | |
| == 2017-01-04 17:13:57,142 easyblock.py:1496 INFO md5 checksum for /user/data/gent/vsc400/vsc40023/EasyBuild/sources/h/hwloc/hwloc-1.11.5.tar.gz: 8f5fe6a9be2eb478409ad5e640b2d3ba | |
| == 2017-01-04 17:13:57,142 config.py:423 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules | |
| == 2017-01-04 17:13:57,142 easyblock.py:1513 INFO Checking dirs that need to be created: ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/hwloc/1.11.5-GCC-6.3.0-2.27', '/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/hwloc', '/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/system/hwloc'] | |
| == 2017-01-04 17:13:57,144 filetools.py:995 DEBUG Not creating existing path /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/hwloc/1.11.5-GCC-6.3.0-2.27 | |
| == 2017-01-04 17:13:57,145 filetools.py:995 DEBUG Not creating existing path /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/hwloc | |
| == 2017-01-04 17:13:57,146 filetools.py:995 DEBUG Not creating existing path /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/system/hwloc | |
| == 2017-01-04 17:13:57,146 easyblock.py:2263 DEBUG Not skipping ready step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True | |
| == 2017-01-04 17:13:57,146 build_log.py:216 INFO creating build dir, resetting environment... | |
| == 2017-01-04 17:13:57,146 easyblock.py:2271 INFO Starting ready step | |
| == 2017-01-04 17:13:57,147 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1378a90> | |
| == 2017-01-04 17:13:57,147 templates.py:175 DEBUG version found in easyconfig is 1.11.5 | |
| == 2017-01-04 17:13:57,147 templates.py:219 DEBUG name: github_account, config: None | |
| == 2017-01-04 17:13:57,147 templates.py:219 DEBUG name: name, config: hwloc | |
| == 2017-01-04 17:13:57,147 templates.py:219 DEBUG name: version, config: 1.11.5 | |
| == 2017-01-04 17:13:57,147 templates.py:219 DEBUG name: versionsuffix, config: | |
| == 2017-01-04 17:13:57,147 templates.py:219 DEBUG name: versionprefix, config: | |
| == 2017-01-04 17:13:57,147 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1378a90> | |
| == 2017-01-04 17:13:57,147 templates.py:175 DEBUG version found in easyconfig is 1.11.5 | |
| == 2017-01-04 17:13:57,148 templates.py:219 DEBUG name: github_account, config: None | |
| == 2017-01-04 17:13:57,148 templates.py:219 DEBUG name: name, config: hwloc | |
| == 2017-01-04 17:13:57,148 templates.py:219 DEBUG name: version, config: 1.11.5 | |
| == 2017-01-04 17:13:57,148 templates.py:219 DEBUG name: versionsuffix, config: | |
| == 2017-01-04 17:13:57,148 templates.py:219 DEBUG name: versionprefix, config: | |
| == 2017-01-04 17:13:57,148 easyblock.py:2274 INFO Running method check_readiness_step part of step ready | |
| == 2017-01-04 17:13:57,148 easyblock.py:1401 DEBUG Desired parallelism specified via 'parallel' build option: None | |
| == 2017-01-04 17:13:57,149 affinity.py:209 DEBUG sched_getaffinity for pid 13867 returned cpuset 0-23 | |
| == 2017-01-04 17:13:57,149 run.py:86 DEBUG Using cached value for command 'ulimit -u': ('4096\n', 0) | |
| == 2017-01-04 17:13:57,149 easyblock.py:1404 INFO Setting parallelism: 24 | |
| == 2017-01-04 17:13:57,149 modules.py:634 DEBUG Current MODULEPATH: /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc | |
| == 2017-01-04 17:13:57,150 modules.py:641 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command | |
| == 2017-01-04 17:13:57,150 modules.py:641 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
| == 2017-01-04 17:13:57,150 modules.py:645 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python --terse list' from /tmp/eb-B3gTBZ/tmpVJdC8l/hpcugent | |
| == 2017-01-04 17:13:57,182 modules.py:651 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python --terse list': stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
| os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
| os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
| os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
| os.environ["_ModuleTable001_"] = "X01vZHVsZVRhYmxlXz17WyJhY3RpdmVTaXplIl09MSxiYXNlTXBhdGhBPXsiL3VzZXIvaG9tZS9nZW50L3ZzYzQwMC92c2M0MDAyMy9lYl9waGFucHlzY3JhdGNoL0NPNy9oYXN3ZWxsLWliL21vZHVsZXMvYWxsIiwiL2V0Yy9tb2R1bGVmaWxlcy92c2MiLH0sWyJjX3JlYnVpbGRUaW1lIl09ODY0MDAsWyJjX3Nob3J0VGltZSJdPWZhbHNlLGZhbWlseT17WyJjbHVzdGVyIl09ImNsdXN0ZXIiLH0saW5hY3RpdmU9e30sbVQ9e2NsdXN0ZXI9e1siRk4iXT0iL2V0Yy9tb2R1bGVmaWxlcy92c2MvY2x1c3Rlci9nb2xldHQubHVhIixbImRlZmF1bHQiXT0wLFsiZnVsbE5hbWUiXT0iY2x1c3Rlci9nb2xldHQiLFsibG9hZE9yZGVyIl09MSxwcm9wVD17bG1vZD17WyJzdGlja3kiXT0x"; | |
| os.environ["_ModuleTable002_"] = "LH0sfSxbInNob3J0Il09ImNsdXN0ZXIiLFsic3RhdHVzIl09ImFjdGl2ZSIsfSx9LG1wYXRoQT17Ii91c2VyL2hvbWUvZ2VudC92c2M0MDAvdnNjNDAwMjMvZWJfcGhhbnB5c2NyYXRjaC9DTzcvaGFzd2VsbC1pYi9tb2R1bGVzL2FsbCIsIi9ldGMvbW9kdWxlZmlsZXMvdnNjIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9ldGMvbW9kdWxlZmlsZXMvdnNjIixbInZlcnNpb24iXT0yLH0="; | |
| os.environ["_ModuleTable_Sz_"] = "2"; | |
| ; stderr: cluster/golett | |
| == 2017-01-04 17:13:57,182 modules.py:968 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python --terse list' ran fine | |
| == 2017-01-04 17:13:57,183 modules.py:682 DEBUG Correcting paths in $LD_LIBRARY_PATH from [''] to [] | |
| == 2017-01-04 17:13:57,183 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') | |
| == 2017-01-04 17:13:57,183 modules.py:682 DEBUG Correcting paths in $LD_PRELOAD from [''] to [] | |
| == 2017-01-04 17:13:57,183 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-01-04 17:13:57,183 easyblock.py:1409 WARNING Loaded modules detected: ['cluster/golett'] | |
| == 2017-01-04 17:13:57,183 easyconfig.py:608 DEBUG Dependencies BEFORE filtering: [{'external_module_metadata': {}, 'full_mod_name': 'numactl/2.0.11-GCC-6.3.0-2.27', 'toolchain': {'version': '6.3.0-2.27', 'name': 'GCC'}, 'name': 'numactl', 'dummy': False, 'short_mod_name': 'numactl/2.0.11-GCC-6.3.0-2.27', 'external_module': False, 'versionsuffix': '', 'version': '2.0.11', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}] | |
| == 2017-01-04 17:13:57,184 toolchain.py:375 DEBUG add_dependencies: adding toolchain dependencies [{'external_module_metadata': {}, 'full_mod_name': 'numactl/2.0.11-GCC-6.3.0-2.27', 'toolchain': {'version': '6.3.0-2.27', 'name': 'GCC'}, 'name': 'numactl', 'dummy': False, 'short_mod_name': 'numactl/2.0.11-GCC-6.3.0-2.27', 'external_module': False, 'versionsuffix': '', 'version': '2.0.11', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}] | |
| == 2017-01-04 17:13:57,184 modules.py:634 DEBUG Current MODULEPATH: /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc | |
| == 2017-01-04 17:13:57,184 modules.py:641 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command | |
| == 2017-01-04 17:13:57,184 modules.py:641 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
| == 2017-01-04 17:13:57,184 modules.py:645 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python --terse --show-hidden avail numactl/2.0.11-GCC-6.3.0-2.27' from /tmp/eb-B3gTBZ/tmpVJdC8l/hpcugent | |
| == 2017-01-04 17:13:57,323 modules.py:651 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python --terse --show-hidden avail numactl/2.0.11-GCC-6.3.0-2.27': stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
| os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
| os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
| os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
| os.environ["_ModuleTable001_"] = "X01vZHVsZVRhYmxlXz17WyJhY3RpdmVTaXplIl09MSxiYXNlTXBhdGhBPXsiL3VzZXIvaG9tZS9nZW50L3ZzYzQwMC92c2M0MDAyMy9lYl9waGFucHlzY3JhdGNoL0NPNy9oYXN3ZWxsLWliL21vZHVsZXMvYWxsIiwiL2V0Yy9tb2R1bGVmaWxlcy92c2MiLH0sWyJjX3JlYnVpbGRUaW1lIl09ODY0MDAsWyJjX3Nob3J0VGltZSJdPWZhbHNlLGZhbWlseT17WyJjbHVzdGVyIl09ImNsdXN0ZXIiLH0saW5hY3RpdmU9e30sbVQ9e2NsdXN0ZXI9e1siRk4iXT0iL2V0Yy9tb2R1bGVmaWxlcy92c2MvY2x1c3Rlci9nb2xldHQubHVhIixbImRlZmF1bHQiXT0wLFsiZnVsbE5hbWUiXT0iY2x1c3Rlci9nb2xldHQiLFsibG9hZE9yZGVyIl09MSxwcm9wVD17bG1vZD17WyJzdGlja3kiXT0x"; | |
| os.environ["_ModuleTable002_"] = "LH0sfSxbInNob3J0Il09ImNsdXN0ZXIiLFsic3RhdHVzIl09ImFjdGl2ZSIsfSx9LG1wYXRoQT17Ii91c2VyL2hvbWUvZ2VudC92c2M0MDAvdnNjNDAwMjMvZWJfcGhhbnB5c2NyYXRjaC9DTzcvaGFzd2VsbC1pYi9tb2R1bGVzL2FsbCIsIi9ldGMvbW9kdWxlZmlsZXMvdnNjIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9ldGMvbW9kdWxlZmlsZXMvdnNjIixbInZlcnNpb24iXT0yLH0="; | |
| os.environ["_ModuleTable_Sz_"] = "2"; | |
| ; stderr: | |
| == 2017-01-04 17:13:57,323 modules.py:968 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python --terse --show-hidden avail numactl/2.0.11-GCC-6.3.0-2.27' ran fine | |
| == 2017-01-04 17:13:57,324 modules.py:682 DEBUG Correcting paths in $LD_LIBRARY_PATH from [''] to [] | |
| == 2017-01-04 17:13:57,324 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') | |
| == 2017-01-04 17:13:57,324 modules.py:682 DEBUG Correcting paths in $LD_PRELOAD from [''] to [] | |
| == 2017-01-04 17:13:57,324 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-01-04 17:13:57,324 modules.py:426 DEBUG 'module available numactl/2.0.11-GCC-6.3.0-2.27' gave 0 answers: [] | |
| == 2017-01-04 17:13:57,324 modules.py:634 DEBUG Current MODULEPATH: /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc | |
| == 2017-01-04 17:13:57,325 modules.py:641 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command | |
| == 2017-01-04 17:13:57,325 modules.py:641 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
| == 2017-01-04 17:13:57,325 modules.py:645 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python show numactl/2.0.11-GCC-6.3.0-2.27' from /tmp/eb-B3gTBZ/tmpVJdC8l/hpcugent | |
| == 2017-01-04 17:13:57,455 modules.py:651 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python show numactl/2.0.11-GCC-6.3.0-2.27': stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
| os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
| os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
| os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
| os.environ["_ModuleTable001_"] = "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"; | |
| os.environ["_ModuleTable002_"] = "LH0sfSxbInNob3J0Il09ImNsdXN0ZXIiLFsic3RhdHVzIl09ImFjdGl2ZSIsfSx9LG1wYXRoQT17Ii91c2VyL2hvbWUvZ2VudC92c2M0MDAvdnNjNDAwMjMvZWJfcGhhbnB5c2NyYXRjaC9DTzcvaGFzd2VsbC1pYi9tb2R1bGVzL2FsbCIsIi9ldGMvbW9kdWxlZmlsZXMvdnNjIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9ldGMvbW9kdWxlZmlsZXMvdnNjIixbInZlcnNpb24iXT0yLH0="; | |
| os.environ["_ModuleTable_Sz_"] = "2"; | |
| ; stderr: Failed to find the following module(s): "numactl/2.0.11-GCC-6.3.0-2.27" in your MODULEPATH | |
| Try: | |
| "module spider numactl/2.0.11-GCC-6.3.0-2.27" | |
| to see if the module(s) are available across all compilers and MPI implementations. | |
| == 2017-01-04 17:13:57,456 modules.py:968 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python show numactl/2.0.11-GCC-6.3.0-2.27' ran fine | |
| == 2017-01-04 17:13:57,456 modules.py:539 DEBUG Cached result for 'module show numactl/2.0.11-GCC-6.3.0-2.27' with key '('MODULEPATH=/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc', 'lmod', 'numactl/2.0.11-GCC-6.3.0-2.27')': os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
| os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
| os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
| os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
| os.environ["_ModuleTable001_"] = "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"; | |
| os.environ["_ModuleTable002_"] = "LH0sfSxbInNob3J0Il09ImNsdXN0ZXIiLFsic3RhdHVzIl09ImFjdGl2ZSIsfSx9LG1wYXRoQT17Ii91c2VyL2hvbWUvZ2VudC92c2M0MDAvdnNjNDAwMjMvZWJfcGhhbnB5c2NyYXRjaC9DTzcvaGFzd2VsbC1pYi9tb2R1bGVzL2FsbCIsIi9ldGMvbW9kdWxlZmlsZXMvdnNjIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9ldGMvbW9kdWxlZmlsZXMvdnNjIixbInZlcnNpb24iXT0yLH0="; | |
| os.environ["_ModuleTable_Sz_"] = "2"; | |
| Failed to find the following module(s): "numactl/2.0.11-GCC-6.3.0-2.27" in your MODULEPATH | |
| Try: | |
| "module spider numactl/2.0.11-GCC-6.3.0-2.27" | |
| to see if the module(s) are available across all compilers and MPI implementations. | |
| == 2017-01-04 17:13:57,456 toolchain.py:392 DEBUG add_dependencies: MODULEPATH: /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc | |
| == 2017-01-04 17:13:57,457 build_log.py:147 ERROR EasyBuild crashed with an error (at ?:124 in __init__): Missing modules for one or more dependencies: numactl/2.0.11-GCC-6.3.0-2.27 (at easybuild/tools/toolchain/toolchain.py:400 in add_dependencies) | |
| == 2017-01-04 17:13:57,458 easyblock.py:2503 WARNING build failed (first 300 chars): Missing modules for one or more dependencies: numactl/2.0.11-GCC-6.3.0-2.27 | |
| == 2017-01-04 17:13:57,458 easyblock.py:276 INFO Closing log for application name hwloc version 1.11.5 |
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