Created
March 16, 2023 17:38
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Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/cellular/nrn/-/pipelines/109632 (:white_check_mark:) running on GitHub PR neuronsimulator/nrn#2272.
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1678983317:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1678983317:resolve_secrets [0Ksection_start:1678983317:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3480943088, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| uid=0(root) gid=0(root) groups=0(root) | |
| root | |
| UID is 0 | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 109632, build ref 8e3810481f2d67cb05a318370fac735509fc5612, job ID 608831 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P109632, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| uid=0(root) gid=0(root) groups=0(root) | |
| root | |
| UID is 0 | |
| A slurm job will be created with name GL_J608831_PROD_P2160_CP4_C47 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 1318397 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J608831_PROD_P2160_CP4_C47 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P109632 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P109632 --ntasks=2 --jobid=1318397 --cpus-per-task=8 --mem=76G | |
| section_end:1678983318:prepare_executor [0Ksection_start:1678983318:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i5n18 via bbpv1.epfl.ch... | |
| section_end:1678983323:prepare_script [0Ksection_start:1678983323:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1678983324:get_sources [0Ksection_start:1678983324:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:intel:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=78789 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1678983331:restore_cache [0Ksection_start:1678983331:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (608829)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=79520 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=608829 responseStatus[0;m=200 OK token[0;m=64_ZtpBK | |
| section_end:1678983332:download_artifacts [0Ksection_start:1678983332:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config add concretizer:reuse:false[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608831/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608831/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608831/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608831/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608831/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:119 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:124 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:129 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:137 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:146 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:200 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:205 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:211 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:221 terminal_title: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600 | |
| _builtin debug: False | |
| [32;1m$ spack config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608831/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/concretizer.yaml:22 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/concretizer.yaml:36 unify: True | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P109632/J608831_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%intel ~rx3d~caliper~gpu+coreneuron~legacy-unit+nmodl~openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/fph6qu2kiwabfnbo5ywpx4uxxsewxywk | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/1318397/ccache | |
| Primary config: /nvme/bbpcihpcproj12/1318397/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
| Stats updated: Thu Mar 16 17:15:37 2023 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.46 / 0.51 (90.09 %) | |
| Files: 23650 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%intel~caliper+coreneuron~gpu~legacy-unit+nmodl~openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@2.13.8%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.11.2%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - x374lng neuron@develop%intel@2021.7.1+binary~caliper~codegenopt+coreneuron~gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+nmodl~openmp+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04 sanitizers=None arch=linux-rhel7-skylake | |
| [^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 3gsnkau ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| [^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] xztjuru ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] ms32l57 ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] 455jiaa ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] sktzpiy ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake | |
| [^] q4mt2xu ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] ogdpwov ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake | |
| [^] 3mknztm ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake | |
| [^] qy7gxuh ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] 7pokw4h ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [+] tb45zmi ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ohajsgg ^hdf5@1.12.2%gcc@12.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] dxtrrtm ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] kjtivgw ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [+] fph6qu2 ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] wqbvd7o ^catch2@2.13.8%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] cek44ke ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
| [^] blf35ks ^nlohmann-json@3.11.2%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] hexz5ps ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ly6cmfc ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [^] fnkrysr ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] gv336wl ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4kxd5n3 ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jrwy3zz ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tm6pmld ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6pjz7mt ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d5vf2au ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7rza5j7 ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
| [^] ht7d3fj ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [+] yzz4r4k ^reportinglib@develop%gcc@12.2.0~ipo~profile+shared~tests build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_INSTALL_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx) | |
| ==> cmake@3.24.3 : has external module in ['cmake/3.24.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td) | |
| [+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w (external hpe-mpi-2.25.hmpt-7pokw4hzcta7cdqxtydumij6gt5w4ilc) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-cek44k | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-2.13.8-wqbvd7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.11.2-blf35k | |
| ==> python@3.10.8 : has external module in ['python/3.10.8'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu | |
| ==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/software/install_gcc-12.2.0-skylake/reportinglib-develop-yzz4r4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.12.2-ohajsg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-dxtrrt | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/software/install_gcc-12.2.0-skylake/libsonata-report-develop-tb45zm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-hexz5p | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/software/install_gcc-12.2.0-skylake/nmodl-develop-fph6qu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml | |
| ==> Installing neuron-develop-x374lngkobtm7rqcn5yjvsysjshhjzmq | |
| ==> No binary for neuron-develop-x374lngkobtm7rqcn5yjvsysjshhjzmq found: installing from source | |
| ==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-x374lngkobtm7rqcn5yjvsysjshhjzmq | |
| Fetch: 18.96s. Build: 23m 8.97s. Total: 23m 27.93s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/software/install_intel-2021.7.1-skylake/neuron-develop-x374ln | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(spack find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
| [32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined the installed hash to be x374lngkobtm7rqcn5yjvsysjshhjzmq | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/1318397/ccache | |
| Primary config: /nvme/bbpcihpcproj12/1318397/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
| Stats updated: Thu Mar 16 17:40:56 2023 | |
| Hits: 480 / 935 (51.34 %) | |
| Direct: 122 / 944 (12.92 %) | |
| Preprocessed: 358 / 816 (43.87 %) | |
| Misses: 455 | |
| Direct: 822 | |
| Preprocessed: 458 | |
| Uncacheable: 137 | |
| Primary storage: | |
| Hits: 1058 / 1882 (56.22 %) | |
| Misses: 824 | |
| Cache size (GB): 0.46 / 0.51 (89.21 %) | |
| Files: 23107 | |
| Cleanups: 4 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 112 | |
| Called for preprocessing: 1 | |
| Compilation failed: 3 | |
| No input file: 8 | |
| Preprocessing failed: 6 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.10.8 | |
| Autoloading intel-oneapi-mkl/2021.4.0 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1678984858:step_script [0Ksection_start:1678984858:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mCreating cache build:neuron:nmodl:intel:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=109341 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Aintel%3Alegacy-1-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1678984879:archive_cache [0Ksection_start:1678984879:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=109485 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=608831 responseStatus[0;m=201 Created token[0;m=64_ZtpBK | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=109520 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=608831 responseStatus[0;m=201 Created token[0;m=64_ZtpBK | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=109555 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=608831 responseStatus[0;m=201 Created token[0;m=64_ZtpBK | |
| section_end:1678984881:upload_artifacts_on_success [0Ksection_start:1678984881:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1678984882:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1678983318:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1678983318:resolve_secrets [0Ksection_start:1678983318:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1158072599, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| uid=0(root) gid=0(root) groups=0(root) | |
| root | |
| UID is 0 | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 109632, build ref 8e3810481f2d67cb05a318370fac735509fc5612, job ID 608834 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P109632, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| uid=0(root) gid=0(root) groups=0(root) | |
| root | |
| UID is 0 | |
| A slurm job will be created with name GL_J608834_PROD_P2160_CP9_C49 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 1318399 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J608834_PROD_P2160_CP9_C49 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P109632 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P109632 --ntasks=2 --jobid=1318399 --cpus-per-task=8 --mem=76G | |
| section_end:1678983321:prepare_executor [0Ksection_start:1678983321:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i5n2 via bbpv1.epfl.ch... | |
| section_end:1678983326:prepare_script [0Ksection_start:1678983326:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1678983327:get_sources [0Ksection_start:1678983327:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=20512 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1678983334:restore_cache [0Ksection_start:1678983334:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (608829)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=21960 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=608829 responseStatus[0;m=200 OK token[0;m=64_KqMy2 | |
| section_end:1678983335:download_artifacts [0Ksection_start:1678983335:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config add concretizer:reuse:false[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608834/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608834/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608834/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608834/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608834/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:119 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:124 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:129 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:137 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:146 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:200 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:205 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:211 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:221 terminal_title: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600 | |
| _builtin debug: False | |
| [32;1m$ spack config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608834/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/concretizer.yaml:22 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/concretizer.yaml:36 unify: True | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P109632/J608834_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit+nmodl~openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/fph6qu2kiwabfnbo5ywpx4uxxsewxywk | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/1318399/ccache | |
| Primary config: /nvme/bbpcihpcproj12/1318399/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
| Stats updated: Thu Mar 16 17:15:40 2023 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.45 / 0.51 (88.58 %) | |
| Files: 23014 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit+nmodl~openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@2.13.8%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.11.2%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - ejlndkj neuron@develop%nvhpc@23.1+binary~caliper~codegenopt+coreneuron+gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+nmodl~openmp+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04 sanitizers=None arch=linux-rhel7-skylake | |
| [^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 3gsnkau ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| [^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [^] a4vi3xx ^cuda@11.8.0%gcc@11.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
| [^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] xztjuru ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] ms32l57 ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] 455jiaa ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] sktzpiy ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake | |
| [^] q4mt2xu ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] ogdpwov ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake | |
| [^] 3mknztm ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake | |
| [^] qy7gxuh ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] 7pokw4h ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [+] tb45zmi ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ohajsgg ^hdf5@1.12.2%gcc@12.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] dxtrrtm ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] kjtivgw ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [+] fph6qu2 ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] wqbvd7o ^catch2@2.13.8%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] cek44ke ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
| [^] blf35ks ^nlohmann-json@3.11.2%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] hexz5ps ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ly6cmfc ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [^] fnkrysr ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] gv336wl ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4kxd5n3 ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jrwy3zz ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tm6pmld ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6pjz7mt ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d5vf2au ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7rza5j7 ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
| [^] ht7d3fj ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [+] yzz4r4k ^reportinglib@develop%gcc@12.2.0~ipo~profile+shared~tests build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_INSTALL_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632, but it is owned by 0 | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx) | |
| ==> cmake@3.24.3 : has external module in ['cmake/3.24.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns) | |
| ==> cuda@11.8.0 : has external module in ['cuda/11.8.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-11.3.0-skylake/cuda-11.8.0-e7hobt (external cuda-11.8.0-a4vi3xxcouml2jrerjszfg7ocjotqvyn) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td) | |
| [+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w (external hpe-mpi-2.25.hmpt-7pokw4hzcta7cdqxtydumij6gt5w4ilc) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-cek44k | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-2.13.8-wqbvd7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.11.2-blf35k | |
| ==> python@3.10.8 : has external module in ['python/3.10.8'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu | |
| ==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/software/install_gcc-12.2.0-skylake/reportinglib-develop-yzz4r4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.12.2-ohajsg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-dxtrrt | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/software/install_gcc-12.2.0-skylake/libsonata-report-develop-tb45zm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-hexz5p | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/software/install_gcc-12.2.0-skylake/nmodl-develop-fph6qu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml | |
| ==> Installing neuron-develop-ejlndkj3mqqops3etyceprteljlbgfd7 | |
| ==> No binary for neuron-develop-ejlndkj3mqqops3etyceprteljlbgfd7 found: installing from source | |
| ==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-ejlndkj3mqqops3etyceprteljlbgfd7 | |
| Fetch: 18.36s. Build: 1h 12m 35.36s. Total: 1h 12m 53.72s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/software/install_nvhpc-23.1-skylake/neuron-develop-ejlndk | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(spack find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
| [32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined the installed hash to be ejlndkj3mqqops3etyceprteljlbgfd7 | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/1318399/ccache | |
| Primary config: /nvme/bbpcihpcproj12/1318399/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
| Stats updated: Thu Mar 16 18:30:20 2023 | |
| Hits: 480 / 934 (51.39 %) | |
| Direct: 122 / 943 (12.94 %) | |
| Preprocessed: 358 / 815 (43.93 %) | |
| Misses: 454 | |
| Direct: 821 | |
| Preprocessed: 457 | |
| Uncacheable: 136 | |
| Primary storage: | |
| Hits: 1058 / 1880 (56.28 %) | |
| Misses: 822 | |
| Cache size (GB): 0.46 / 0.51 (90.12 %) | |
| Files: 23251 | |
| Cleanups: 2 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 111 | |
| Called for preprocessing: 1 | |
| Compilation failed: 3 | |
| No input file: 8 | |
| Preprocessing failed: 6 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.10.8 | |
| Autoloading intel-oneapi-mkl/2021.4.0 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1678987822:step_script [0Ksection_start:1678987822:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mCreating cache build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=129104 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aacc%3Alegacy-1-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1678987841:archive_cache [0Ksection_start:1678987841:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=129397 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=608834 responseStatus[0;m=201 Created token[0;m=64_KqMy2 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=129437 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=608834 responseStatus[0;m=201 Created token[0;m=64_KqMy2 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=129481 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=608834 responseStatus[0;m=201 Created token[0;m=64_KqMy2 | |
| section_end:1678987843:upload_artifacts_on_success [0Ksection_start:1678987843:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1678987844:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1678983319:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1678983319:resolve_secrets [0Ksection_start:1678983319:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3791965086, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| uid=0(root) gid=0(root) groups=0(root) | |
| root | |
| UID is 0 | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 109632, build ref 8e3810481f2d67cb05a318370fac735509fc5612, job ID 608836 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P109632, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| uid=0(root) gid=0(root) groups=0(root) | |
| root | |
| UID is 0 | |
| A slurm job will be created with name GL_J608836_PROD_P2160_CP12_C52 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 1318401 | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J608836_PROD_P2160_CP12_C52 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P109632 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P109632 --ntasks=2 --jobid=1318401 --cpus-per-task=8 --mem=76G | |
| section_end:1678983321:prepare_executor [0Ksection_start:1678983321:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i7n31 via bbpv1.epfl.ch... | |
| section_end:1678983326:prepare_script [0Ksection_start:1678983326:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1678983327:get_sources [0Ksection_start:1678983327:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=127089 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1678983334:restore_cache [0Ksection_start:1678983334:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (608829)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=127277 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=608829 responseStatus[0;m=200 OK token[0;m=64_hqJF5 | |
| section_end:1678983335:download_artifacts [0Ksection_start:1678983335:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config add concretizer:reuse:false[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608836/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608836/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608836/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608836/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608836/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:119 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:124 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:129 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:137 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:146 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:200 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:205 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:211 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:221 terminal_title: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600 | |
| _builtin debug: False | |
| [32;1m$ spack config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608836/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/concretizer.yaml:22 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/concretizer.yaml:36 unify: True | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P109632/J608836_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+nmodl+openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/fph6qu2kiwabfnbo5ywpx4uxxsewxywk | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/1318401/ccache | |
| Primary config: /nvme/bbpcihpcproj12/1318401/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
| Stats updated: Thu Mar 16 17:15:55 2023 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.46 / 0.51 (89.18 %) | |
| Files: 22737 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+nmodl+openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| - ^caliper+cuda cuda_arch=70 | |
| [+] ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@2.13.8%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.11.2%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - kgnjqhi neuron@develop%nvhpc@23.1+binary+caliper~codegenopt+coreneuron+gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+nmodl+openmp+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04 sanitizers=None arch=linux-rhel7-skylake | |
| [^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 3gsnkau ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| [^] rpm7l2e ^caliper@2.8.0%gcc@11.3.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow build_system=cmake build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake | |
| [^] pcfmpqe ^adiak@0.2.2%gcc@12.2.0~ipo+mpi+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7yt5klx ^elfutils@0.188%gcc@12.2.0~bzip2~debuginfod+nls~xz~zstd build_system=autotools arch=linux-rhel7-skylake | |
| [^] zttduab ^m4@1.4.16%gcc@12.2.0+sigsegv build_system=autotools arch=linux-rhel7-skylake | |
| [^] ogdpwov ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake | |
| [^] ja6blio ^libunwind@1.6.2%gcc@12.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake | |
| [^] 3gsobub ^papi@6.0.0.1%gcc@12.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake | |
| [^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [^] a4vi3xx ^cuda@11.8.0%gcc@11.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
| [^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] xztjuru ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] ms32l57 ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] 455jiaa ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] sktzpiy ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake | |
| [^] q4mt2xu ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 3mknztm ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake | |
| [^] qy7gxuh ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] 7pokw4h ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [+] tb45zmi ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ohajsgg ^hdf5@1.12.2%gcc@12.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] dxtrrtm ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] kjtivgw ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [+] fph6qu2 ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] wqbvd7o ^catch2@2.13.8%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] cek44ke ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
| [^] blf35ks ^nlohmann-json@3.11.2%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] hexz5ps ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ly6cmfc ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [^] fnkrysr ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] gv336wl ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4kxd5n3 ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jrwy3zz ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tm6pmld ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6pjz7mt ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d5vf2au ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7rza5j7 ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
| [^] ht7d3fj ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [+] yzz4r4k ^reportinglib@develop%gcc@12.2.0~ipo~profile+shared~tests build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_INSTALL_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632, but it is owned by 0 | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx) | |
| ==> cmake@3.24.3 : has external module in ['cmake/3.24.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w (external hpe-mpi-2.25.hmpt-7pokw4hzcta7cdqxtydumij6gt5w4ilc) | |
| ==> cuda@11.8.0 : has external module in ['cuda/11.8.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-11.3.0-skylake/cuda-11.8.0-e7hobt (external cuda-11.8.0-a4vi3xxcouml2jrerjszfg7ocjotqvyn) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td) | |
| [+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj) | |
| [+] /usr (external m4-1.4.16-zttduab7wfircnz7epbqj5ghrnfugdox) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libunwind-1.6.2-ja6bli | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/papi-6.0.0.1-3gsobu | |
| ==> python@3.10.8 : has external module in ['python/3.10.8'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-cek44k | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-2.13.8-wqbvd7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.11.2-blf35k | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu | |
| ==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/adiak-0.2.2-pcfmpq | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/software/install_gcc-12.2.0-skylake/reportinglib-develop-yzz4r4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.12.2-ohajsg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-dxtrrt | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/software/install_gcc-12.2.0-skylake/libsonata-report-develop-tb45zm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/elfutils-0.188-7yt5kl | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-hexz5p | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-11.3.0-skylake/caliper-2.8.0-rpm7l2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/software/install_gcc-12.2.0-skylake/nmodl-develop-fph6qu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml | |
| ==> Installing neuron-develop-kgnjqhi3is2waeyjyp4hsdgv7tajaj4h | |
| ==> No binary for neuron-develop-kgnjqhi3is2waeyjyp4hsdgv7tajaj4h found: installing from source | |
| ==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-kgnjqhi3is2waeyjyp4hsdgv7tajaj4h | |
| Fetch: 1m 4.11s. Build: 58m 21.14s. Total: 59m 25.25s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/software/install_nvhpc-23.1-skylake/neuron-develop-kgnjqh | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(spack find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
| [32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined the installed hash to be kgnjqhi3is2waeyjyp4hsdgv7tajaj4h | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/1318401/ccache | |
| Primary config: /nvme/bbpcihpcproj12/1318401/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
| Stats updated: Thu Mar 16 18:19:35 2023 | |
| Hits: 480 / 936 (51.28 %) | |
| Direct: 124 / 945 (13.12 %) | |
| Preprocessed: 356 / 815 (43.68 %) | |
| Misses: 456 | |
| Direct: 821 | |
| Preprocessed: 459 | |
| Uncacheable: 138 | |
| Primary storage: | |
| Hits: 1060 / 1884 (56.26 %) | |
| Misses: 824 | |
| Cache size (GB): 0.47 / 0.51 (91.95 %) | |
| Files: 23244 | |
| Cleanups: 1 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 113 | |
| Called for preprocessing: 1 | |
| Compilation failed: 3 | |
| No input file: 8 | |
| Preprocessing failed: 6 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.10.8 | |
| Autoloading intel-oneapi-mkl/2021.4.0 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1678987176:step_script [0Ksection_start:1678987176:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mCreating cache build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=208241 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp%3Alegacy-1-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1678987196:archive_cache [0Ksection_start:1678987196:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=208372 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=608836 responseStatus[0;m=201 Created token[0;m=64_hqJF5 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=208412 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=608836 responseStatus[0;m=201 Created token[0;m=64_hqJF5 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=208455 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=608836 responseStatus[0;m=201 Created token[0;m=64_hqJF5 | |
| section_end:1678987198:upload_artifacts_on_success [0Ksection_start:1678987198:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1678987199:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1678983319:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1678983319:resolve_secrets [0Ksection_start:1678983319:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1195679288, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| uid=0(root) gid=0(root) groups=0(root) | |
| root | |
| UID is 0 | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 109632, build ref 8e3810481f2d67cb05a318370fac735509fc5612, job ID 608837 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P109632, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| uid=0(root) gid=0(root) groups=0(root) | |
| root | |
| UID is 0 | |
| A slurm job will be created with name GL_J608837_PROD_P2160_CP17_C53 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 1318402 | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J608837_PROD_P2160_CP17_C53 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P109632 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P109632 --ntasks=2 --jobid=1318402 --cpus-per-task=8 --mem=76G | |
| section_end:1678983321:prepare_executor [0Ksection_start:1678983321:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i7n20 via bbpv1.epfl.ch... | |
| section_end:1678983326:prepare_script [0Ksection_start:1678983326:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1678983327:get_sources [0Ksection_start:1678983327:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:omp-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=258642 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1678983334:restore_cache [0Ksection_start:1678983334:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (608829)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=258796 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=608829 responseStatus[0;m=200 OK token[0;m=64_vSV7M | |
| section_end:1678983335:download_artifacts [0Ksection_start:1678983335:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config add concretizer:reuse:false[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608837/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608837/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608837/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608837/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608837/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:119 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:124 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:129 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:137 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:146 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:200 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:205 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:211 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:221 terminal_title: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600 | |
| _builtin debug: False | |
| [32;1m$ spack config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608837/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/concretizer.yaml:22 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/concretizer.yaml:36 unify: True | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P109632/J608837_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+nmodl+openmp~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/fph6qu2kiwabfnbo5ywpx4uxxsewxywk | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/1318402/ccache | |
| Primary config: /nvme/bbpcihpcproj12/1318402/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
| Stats updated: Thu Mar 16 17:15:44 2023 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.45 / 0.51 (88.57 %) | |
| Files: 23007 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+nmodl+openmp~rx3d~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| - ^caliper+cuda cuda_arch=70 | |
| [+] ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@2.13.8%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.11.2%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - kjyyogz neuron@develop%nvhpc@23.1+binary+caliper~codegenopt+coreneuron+gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+nmodl+openmp+python+report~rx3d~shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04 sanitizers=None arch=linux-rhel7-skylake | |
| [^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 3gsnkau ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| [^] rpm7l2e ^caliper@2.8.0%gcc@11.3.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow build_system=cmake build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake | |
| [^] pcfmpqe ^adiak@0.2.2%gcc@12.2.0~ipo+mpi+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7yt5klx ^elfutils@0.188%gcc@12.2.0~bzip2~debuginfod+nls~xz~zstd build_system=autotools arch=linux-rhel7-skylake | |
| [^] zttduab ^m4@1.4.16%gcc@12.2.0+sigsegv build_system=autotools arch=linux-rhel7-skylake | |
| [^] ogdpwov ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake | |
| [^] ja6blio ^libunwind@1.6.2%gcc@12.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake | |
| [^] 3gsobub ^papi@6.0.0.1%gcc@12.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake | |
| [^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [^] a4vi3xx ^cuda@11.8.0%gcc@11.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
| [^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] xztjuru ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] ms32l57 ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] 455jiaa ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] sktzpiy ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake | |
| [^] q4mt2xu ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 3mknztm ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake | |
| [^] qy7gxuh ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] 7pokw4h ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [+] tb45zmi ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ohajsgg ^hdf5@1.12.2%gcc@12.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] dxtrrtm ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] kjtivgw ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [+] fph6qu2 ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] wqbvd7o ^catch2@2.13.8%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] cek44ke ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
| [^] blf35ks ^nlohmann-json@3.11.2%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] hexz5ps ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ly6cmfc ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [^] fnkrysr ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] gv336wl ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4kxd5n3 ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jrwy3zz ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tm6pmld ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6pjz7mt ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d5vf2au ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7rza5j7 ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
| [^] ht7d3fj ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [+] yzz4r4k ^reportinglib@develop%gcc@12.2.0~ipo~profile+shared~tests build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_INSTALL_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632, but it is owned by 0 | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx) | |
| ==> cmake@3.24.3 : has external module in ['cmake/3.24.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w (external hpe-mpi-2.25.hmpt-7pokw4hzcta7cdqxtydumij6gt5w4ilc) | |
| ==> cuda@11.8.0 : has external module in ['cuda/11.8.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-11.3.0-skylake/cuda-11.8.0-e7hobt (external cuda-11.8.0-a4vi3xxcouml2jrerjszfg7ocjotqvyn) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td) | |
| [+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj) | |
| [+] /usr (external m4-1.4.16-zttduab7wfircnz7epbqj5ghrnfugdox) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libunwind-1.6.2-ja6bli | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/papi-6.0.0.1-3gsobu | |
| ==> python@3.10.8 : has external module in ['python/3.10.8'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-cek44k | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-2.13.8-wqbvd7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.11.2-blf35k | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu | |
| ==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/adiak-0.2.2-pcfmpq | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/software/install_gcc-12.2.0-skylake/reportinglib-develop-yzz4r4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.12.2-ohajsg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-dxtrrt | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/software/install_gcc-12.2.0-skylake/libsonata-report-develop-tb45zm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/elfutils-0.188-7yt5kl | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-hexz5p | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-11.3.0-skylake/caliper-2.8.0-rpm7l2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/software/install_gcc-12.2.0-skylake/nmodl-develop-fph6qu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml | |
| ==> Installing neuron-develop-kjyyogzvxvbaoxncppvn7jaxjta7uokx | |
| ==> No binary for neuron-develop-kjyyogzvxvbaoxncppvn7jaxjta7uokx found: installing from source | |
| ==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-kjyyogzvxvbaoxncppvn7jaxjta7uokx | |
| Fetch: 30.05s. Build: 29m 25.90s. Total: 29m 55.94s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/software/install_nvhpc-23.1-skylake/neuron-develop-kjyyog | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(spack find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
| [32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined the installed hash to be kjyyogzvxvbaoxncppvn7jaxjta7uokx | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/1318402/ccache | |
| Primary config: /nvme/bbpcihpcproj12/1318402/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
| Stats updated: Thu Mar 16 17:48:09 2023 | |
| Hits: 480 / 936 (51.28 %) | |
| Direct: 125 / 945 (13.23 %) | |
| Preprocessed: 355 / 814 (43.61 %) | |
| Misses: 456 | |
| Direct: 820 | |
| Preprocessed: 459 | |
| Uncacheable: 138 | |
| Primary storage: | |
| Hits: 1061 / 1884 (56.32 %) | |
| Misses: 823 | |
| Cache size (GB): 0.45 / 0.51 (88.85 %) | |
| Files: 22976 | |
| Cleanups: 3 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 113 | |
| Called for preprocessing: 1 | |
| Compilation failed: 3 | |
| No input file: 8 | |
| Preprocessing failed: 6 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.10.8 | |
| Autoloading intel-oneapi-mkl/2021.4.0 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1678985290:step_script [0Ksection_start:1678985290:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mCreating cache build:neuron:nmodl:nvhpc:omp-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=299238 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp-1-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1678985309:archive_cache [0Ksection_start:1678985309:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=302220 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=608837 responseStatus[0;m=201 Created token[0;m=64_vSV7M | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=302322 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=608837 responseStatus[0;m=201 Created token[0;m=64_vSV7M | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=302408 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=608837 responseStatus[0;m=201 Created token[0;m=64_vSV7M | |
| section_end:1678985311:upload_artifacts_on_success [0Ksection_start:1678985311:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1678985312:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1678982859:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1678982859:resolve_secrets [0Ksection_start:1678982859:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1942900222, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| uid=0(root) gid=0(root) groups=0(root) | |
| root | |
| UID is 0 | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 109632, build ref 8e3810481f2d67cb05a318370fac735509fc5612, job ID 608829 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P109632, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| uid=0(root) gid=0(root) groups=0(root) | |
| root | |
| UID is 0 | |
| A slurm job will be created with name GL_J608829_PROD_P2160_CP5_C5 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 1318277 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J608829_PROD_P2160_CP5_C5 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P109632 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P109632 --ntasks=2 --jobid=1318277 --cpus-per-task=8 --mem=76G | |
| section_end:1678982860:prepare_executor [0Ksection_start:1678982860:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i5n18 via bbpv1.epfl.ch... | |
| section_end:1678982865:prepare_script [0Ksection_start:1678982865:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1678982866:get_sources [0Ksection_start:1678982866:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:nmodl-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=43671 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1678982871:restore_cache [0Ksection_start:1678982871:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for spack_setup (608827)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=44387 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=608827 responseStatus[0;m=200 OK token[0;m=64_8oo7R | |
| section_end:1678982873:download_artifacts [0Ksection_start:1678982873:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config add concretizer:reuse:false[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608829/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608829/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608829/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608829/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608829/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:119 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:124 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:129 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:137 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:146 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:200 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:205 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:211 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:221 terminal_title: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600 | |
| _builtin debug: False | |
| [32;1m$ spack config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608829/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/concretizer.yaml:22 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827/spack/etc/spack/defaults/concretizer.yaml:36 unify: True | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P109632/J608829_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install nmodl%gcc ~legacy-unit | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/1318277/ccache | |
| Primary config: /nvme/bbpcihpcproj12/1318277/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
| Stats updated: Thu Mar 16 17:08:00 2023 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.43 / 0.51 (84.68 %) | |
| Files: 766 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - nmodl%gcc~legacy-unit | |
| Concretized | |
| -------------------------------- | |
| - fph6qu2 nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] wqbvd7o ^catch2@2.13.8%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] cek44ke ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
| [^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] blf35ks ^nlohmann-json@3.11.2%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] gv336wl ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d7dkmvv ^py-flit-core@3.7.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4kxd5n3 ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jrwy3zz ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] zbqiukk ^py-setuptools-scm@7.0.5%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ihcuyox ^py-typing-extensions@4.3.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d5vf2au ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7rza5j7 ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
| [^] dxtrrtm ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_INSTALL_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632, but it is owned by 0 | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id) | |
| ==> cmake@3.24.3 : has external module in ['cmake/3.24.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li) | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg) | |
| ==> python@3.10.8 : has external module in ['python/3.10.8'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.11.2-blf35k | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-2.13.8-wqbvd7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-cek44k | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-dxtrrt | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-flit-core-3.7.1-d7dkmv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-typing-extensions-4.3.0-ihcuyo | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-scm-7.0.5-zbqiuk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w | |
| ==> Installing nmodl-develop-fph6qu2kiwabfnbo5ywpx4uxxsewxywk | |
| ==> No binary for nmodl-develop-fph6qu2kiwabfnbo5ywpx4uxxsewxywk found: installing from source | |
| ==> No patches needed for nmodl | |
| ==> nmodl: Executing phase: 'cmake' | |
| ==> nmodl: Executing phase: 'build' | |
| ==> nmodl: Executing phase: 'install' | |
| ==> nmodl: Successfully installed nmodl-develop-fph6qu2kiwabfnbo5ywpx4uxxsewxywk | |
| Fetch: 1m 29.18s. Build: 3m 49.56s. Total: 5m 18.75s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/software/install_gcc-12.2.0-skylake/nmodl-develop-fph6qu | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(spack find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
| [32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined the installed hash to be fph6qu2kiwabfnbo5ywpx4uxxsewxywk | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/1318277/ccache | |
| Primary config: /nvme/bbpcihpcproj12/1318277/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
| Stats updated: Thu Mar 16 17:14:49 2023 | |
| Hits: 130 / 132 (98.48 %) | |
| Direct: 28 / 132 (21.21 %) | |
| Preprocessed: 102 / 104 (98.08 %) | |
| Misses: 2 | |
| Direct: 104 | |
| Preprocessed: 2 | |
| Uncacheable: 26 | |
| Primary storage: | |
| Hits: 158 / 264 (59.85 %) | |
| Misses: 106 | |
| Cache size (GB): 0.43 / 0.51 (84.71 %) | |
| Files: 770 | |
| Uncacheable: | |
| Called for linking: 25 | |
| No input file: 1 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.10.8 | |
| Autoloading intel-oneapi-mkl/2021.4.0 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1678983292:step_script [0Ksection_start:1678983292:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mCreating cache build:nmodl-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=77086 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Anmodl-1-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1678983312:archive_cache [0Ksection_start:1678983312:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=77743 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=608829 responseStatus[0;m=201 Created token[0;m=64_8oo7R | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=77777 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=608829 responseStatus[0;m=201 Created token[0;m=64_8oo7R | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=77809 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=608829 responseStatus[0;m=201 Created token[0;m=64_8oo7R | |
| section_end:1678983314:upload_artifacts_on_success [0Ksection_start:1678983314:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1678983315:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.4.0 (43b2dc3d)[0;m | |
| [0K on macos-arm64 vGzz-bdp[0;m | |
| section_start:1678982419:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1678982419:resolve_secrets [0Ksection_start:1678982419:prepare_executor [0K[0K[36;1mPreparing the "shell" executor[0;m[0;m | |
| [0KUsing Shell executor...[0;m | |
| section_end:1678982419:prepare_executor [0Ksection_start:1678982419:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on bbpmacglr01.bbp.epfl.ch... | |
| section_end:1678982419:prepare_script [0Ksection_start:1678982419:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mFetching changes with git depth set to 20...[0;m | |
| Initialized empty Git repository in /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/.git/ | |
| [32;1mCreated fresh repository.[0;m | |
| [32;1mChecking out 8e381048 as rxd-hoc-spy...[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1678982421:get_sources [0Ksection_start:1678982421:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-rxd-hoc-spy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=arm64 os[0;m=darwin pid[0;m=15009 revision[0;m=43b2dc3d version[0;m=15.4.0 | |
| No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted.[0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1678982422:restore_cache [0Ksection_start:1678982422:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [32;1m$ python3 -m virtualenv venv[0;m | |
| created virtual environment CPython3.10.8.final.0-64 in 152ms | |
| creator CPython3Posix(dest=/Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/venv, clear=False, no_vcs_ignore=False, global=False) | |
| seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/Users/gitlab-runner/Library/Application Support/virtualenv) | |
| added seed packages: pip==23.0.1, setuptools==67.3.3, wheel==0.38.4 | |
| activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator | |
| [32;1m$ venv/bin/pip install --upgrade pip -r nrn_requirements.txt[0;m | |
| Requirement already satisfied: pip in ./venv/lib/python3.10/site-packages (23.0.1) | |
| Requirement already satisfied: wheel in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 1)) (0.38.4) | |
| Collecting wheel | |
| Using cached wheel-0.40.0-py3-none-any.whl (64 kB) | |
| Requirement already satisfied: setuptools in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 2)) (67.3.3) | |
| Collecting setuptools | |
| Using cached setuptools-67.6.0-py3-none-any.whl (1.1 MB) | |
| Collecting setuptools_scm | |
| Using cached setuptools_scm-7.1.0-py3-none-any.whl (43 kB) | |
| Collecting scikit-build | |
| Using cached scikit_build-0.16.7-py3-none-any.whl (79 kB) | |
| Collecting matplotlib | |
| Using cached matplotlib-3.7.1-cp310-cp310-macosx_11_0_arm64.whl (7.3 MB) | |
| Collecting bokeh<3 | |
| Using cached bokeh-2.4.3-py3-none-any.whl (18.5 MB) | |
| Collecting ipython | |
| Using cached ipython-8.11.0-py3-none-any.whl (793 kB) | |
| Collecting cython | |
| Using cached Cython-0.29.33-py2.py3-none-any.whl (987 kB) | |
| Collecting packaging | |
| Using cached packaging-23.0-py3-none-any.whl (42 kB) | |
| Collecting pytest | |
| Using cached pytest-7.2.2-py3-none-any.whl (317 kB) | |
| Collecting pytest-cov | |
| Using cached pytest_cov-4.0.0-py3-none-any.whl (21 kB) | |
| Collecting mpi4py | |
| Using cached mpi4py-3.1.4-cp310-cp310-macosx_12_0_arm64.whl | |
| Collecting numpy | |
| Using cached numpy-1.24.2-cp310-cp310-macosx_11_0_arm64.whl (13.9 MB) | |
| Collecting typing-extensions | |
| Using cached typing_extensions-4.5.0-py3-none-any.whl (27 kB) | |
| Collecting tomli>=1.0.0 | |
| Using cached tomli-2.0.1-py3-none-any.whl (12 kB) | |
| Collecting distro | |
| Using cached distro-1.8.0-py3-none-any.whl (20 kB) | |
| Collecting fonttools>=4.22.0 | |
| Using cached fonttools-4.39.1-py3-none-any.whl (1.0 MB) | |
| Collecting pyparsing>=2.3.1 | |
| Using cached pyparsing-3.0.9-py3-none-any.whl (98 kB) | |
| Collecting cycler>=0.10 | |
| Using cached cycler-0.11.0-py3-none-any.whl (6.4 kB) | |
| Collecting python-dateutil>=2.7 | |
| Using cached python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB) | |
| Collecting contourpy>=1.0.1 | |
| Using cached contourpy-1.0.7-cp310-cp310-macosx_11_0_arm64.whl (229 kB) | |
| Collecting pillow>=6.2.0 | |
| Using cached Pillow-9.4.0-cp310-cp310-macosx_11_0_arm64.whl (3.0 MB) | |
| Collecting kiwisolver>=1.0.1 | |
| Using cached kiwisolver-1.4.4-cp310-cp310-macosx_11_0_arm64.whl (63 kB) | |
| Collecting Jinja2>=2.9 | |
| Using cached Jinja2-3.1.2-py3-none-any.whl (133 kB) | |
| Collecting tornado>=5.1 | |
| Using cached tornado-6.2-cp37-abi3-macosx_10_9_universal2.whl (421 kB) | |
| Collecting PyYAML>=3.10 | |
| Using cached PyYAML-6.0-cp310-cp310-macosx_11_0_arm64.whl (173 kB) | |
| Collecting jedi>=0.16 | |
| Using cached jedi-0.18.2-py2.py3-none-any.whl (1.6 MB) | |
| Collecting appnope | |
| Using cached appnope-0.1.3-py2.py3-none-any.whl (4.4 kB) | |
| Collecting traitlets>=5 | |
| Using cached traitlets-5.9.0-py3-none-any.whl (117 kB) | |
| Collecting backcall | |
| Using cached backcall-0.2.0-py2.py3-none-any.whl (11 kB) | |
| Collecting pygments>=2.4.0 | |
| Using cached Pygments-2.14.0-py3-none-any.whl (1.1 MB) | |
| Collecting decorator | |
| Using cached decorator-5.1.1-py3-none-any.whl (9.1 kB) | |
| Collecting stack-data | |
| Using cached stack_data-0.6.2-py3-none-any.whl (24 kB) | |
| Collecting pexpect>4.3 | |
| Using cached pexpect-4.8.0-py2.py3-none-any.whl (59 kB) | |
| Collecting matplotlib-inline | |
| Using cached matplotlib_inline-0.1.6-py3-none-any.whl (9.4 kB) | |
| Collecting prompt-toolkit!=3.0.37,<3.1.0,>=3.0.30 | |
| Using cached prompt_toolkit-3.0.38-py3-none-any.whl (385 kB) | |
| Collecting pickleshare | |
| Using cached pickleshare-0.7.5-py2.py3-none-any.whl (6.9 kB) | |
| Collecting exceptiongroup>=1.0.0rc8 | |
| Using cached exceptiongroup-1.1.1-py3-none-any.whl (14 kB) | |
| Collecting pluggy<2.0,>=0.12 | |
| Using cached pluggy-1.0.0-py2.py3-none-any.whl (13 kB) | |
| Collecting attrs>=19.2.0 | |
| Using cached attrs-22.2.0-py3-none-any.whl (60 kB) | |
| Collecting iniconfig | |
| Using cached iniconfig-2.0.0-py3-none-any.whl (5.9 kB) | |
| Collecting coverage[toml]>=5.2.1 | |
| Using cached coverage-7.2.2-cp310-cp310-macosx_11_0_arm64.whl (199 kB) | |
| Collecting parso<0.9.0,>=0.8.0 | |
| Using cached parso-0.8.3-py2.py3-none-any.whl (100 kB) | |
| Collecting MarkupSafe>=2.0 | |
| Using cached MarkupSafe-2.1.2-cp310-cp310-macosx_10_9_universal2.whl (17 kB) | |
| Collecting ptyprocess>=0.5 | |
| Using cached ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB) | |
| Collecting wcwidth | |
| Using cached wcwidth-0.2.6-py2.py3-none-any.whl (29 kB) | |
| Collecting six>=1.5 | |
| Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) | |
| Collecting asttokens>=2.1.0 | |
| Using cached asttokens-2.2.1-py2.py3-none-any.whl (26 kB) | |
| Collecting executing>=1.2.0 | |
| Using cached executing-1.2.0-py2.py3-none-any.whl (24 kB) | |
| Collecting pure-eval | |
| Using cached pure_eval-0.2.2-py3-none-any.whl (11 kB) | |
| Installing collected packages: wcwidth, pure-eval, ptyprocess, pickleshare, executing, backcall, appnope, wheel, typing-extensions, traitlets, tornado, tomli, six, setuptools, PyYAML, pyparsing, pygments, prompt-toolkit, pluggy, pillow, pexpect, parso, packaging, numpy, mpi4py, MarkupSafe, kiwisolver, iniconfig, fonttools, exceptiongroup, distro, decorator, cython, cycler, coverage, attrs, setuptools_scm, scikit-build, python-dateutil, pytest, matplotlib-inline, Jinja2, jedi, contourpy, asttokens, stack-data, pytest-cov, matplotlib, bokeh, ipython | |
| Attempting uninstall: wheel | |
| Found existing installation: wheel 0.38.4 | |
| Uninstalling wheel-0.38.4: | |
| Successfully uninstalled wheel-0.38.4 | |
| Attempting uninstall: setuptools | |
| Found existing installation: setuptools 67.3.3 | |
| Uninstalling setuptools-67.3.3: | |
| Successfully uninstalled setuptools-67.3.3 | |
| Successfully installed Jinja2-3.1.2 MarkupSafe-2.1.2 PyYAML-6.0 appnope-0.1.3 asttokens-2.2.1 attrs-22.2.0 backcall-0.2.0 bokeh-2.4.3 contourpy-1.0.7 coverage-7.2.2 cycler-0.11.0 cython-0.29.33 decorator-5.1.1 distro-1.8.0 exceptiongroup-1.1.1 executing-1.2.0 fonttools-4.39.1 iniconfig-2.0.0 ipython-8.11.0 jedi-0.18.2 kiwisolver-1.4.4 matplotlib-3.7.1 matplotlib-inline-0.1.6 mpi4py-3.1.4 numpy-1.24.2 packaging-23.0 parso-0.8.3 pexpect-4.8.0 pickleshare-0.7.5 pillow-9.4.0 pluggy-1.0.0 prompt-toolkit-3.0.38 ptyprocess-0.7.0 pure-eval-0.2.2 pygments-2.14.0 pyparsing-3.0.9 pytest-7.2.2 pytest-cov-4.0.0 python-dateutil-2.8.2 scikit-build-0.16.7 setuptools-67.6.0 setuptools_scm-7.1.0 six-1.16.0 stack-data-0.6.2 tomli-2.0.1 tornado-6.2 traitlets-5.9.0 typing-extensions-4.5.0 wcwidth-0.2.6 wheel-0.40.0 | |
| [32;1m$ venv/bin/python --version[0;m | |
| Python 3.10.8 | |
| [32;1m$ venv/bin/python -c "import os,matplotlib; f = open(os.path.join(os.path.dirname(matplotlib.__file__), \"mpl-data/matplotlibrc\"),\"a\"); f.write(\"backend: TkAgg\");f.close();"[0;m | |
| [32;1m$ export CXX=${CXX:-g++}[0;m | |
| [32;1m$ export CC=${CC:-gcc}[0;m | |
| [32;1m$ export PYTHON=$(pwd)/venv/bin/python3[0;m | |
| [32;1m$ export INSTALL_DIR=$(pwd)/install[0;m | |
| [32;1m$ echo $LANG[0;m | |
| [32;1m$ echo $LC_ALL[0;m | |
| [32;1m$ source venv/bin/activate[0;m | |
| [32;1m$ export PYTHONPATH=$(${PYTHON} -c "import site; print(\":\".join(site.getsitepackages()))")[0;m | |
| [32;1m$ export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python/[0;m | |
| [32;1m$ ${PYTHON} -c 'import os,sys; os.set_blocking(sys.stdout.fileno(), True)'[0;m | |
| [32;1m$ cmake_args=(-G Ninja)[0;m | |
| [32;1m$ if [[ -n "${sanitizer}" ]]; then[0;m | |
| [32;1m$ cmake_args+=(-DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS="-O1 -g" -DCMAKE_CXX_FLAGS="-O1 -g" -DNRN_SANITIZERS=$(echo ${sanitizer} | sed -e 's/-/,/g'))[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ cmake_args+=(-DCMAKE_C_COMPILER="${CC}" -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER="${CXX}" -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX="${INSTALL_DIR}" -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=${cmake_coreneuron} -DNRN_ENABLE_INTERVIEWS=${cmake_interviews} -DNRN_ENABLE_RX3D=${cmake_rx3d})[0;m | |
| [32;1m$ cmake_args+=(-DPYTHON_EXECUTABLE="${PYTHON}")[0;m | |
| [32;1m$ mkdir build && cd build[0;m | |
| [32;1m$ echo "Building with ${cmake_args[@]}"[0;m | |
| Building with -G Ninja -DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS=-O1 -g -DCMAKE_CXX_FLAGS=-O1 -g -DNRN_SANITIZERS=address -DCMAKE_C_COMPILER=gcc -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER=g++ -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX=/Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DPYTHON_EXECUTABLE=/Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/venv/bin/python3 | |
| [32;1m$ cmake .. "${cmake_args[@]}"[0;m | |
| -- The C compiler identification is AppleClang 14.0.0.14000029 | |
| -- The CXX compiler identification is AppleClang 14.0.0.14000029 | |
| -- Detecting C compiler ABI info | |
| -- Detecting C compiler ABI info - done | |
| -- Check for working C compiler: /usr/bin/gcc - skipped | |
| -- Detecting C compile features | |
| -- Detecting C compile features - done | |
| -- Detecting CXX compiler ABI info | |
| -- Detecting CXX compiler ABI info - done | |
| -- Check for working CXX compiler: /usr/bin/g++ - skipped | |
| -- Detecting CXX compile features | |
| -- Detecting CXX compile features - done | |
| -- git describe failed (stdout: '', stderr: 'fatal: No names found, cannot describe anything.', code: 128), skipping the version check | |
| -- Sub-module : missing external/coding-conventions : running git submodule update --init | |
| Submodule 'external/coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/coding-conventions' | |
| Cloning into '/Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/external/coding-conventions'... | |
| Submodule path 'external/coding-conventions': checked out 'c539260e20d94033ce2eaa69e0aab1c78451d4d6' | |
| -- Fetching git submodule external/Random123: running git submodule update --init;--recursive;--depth;1 -- external/Random123 | |
| Submodule 'external/Random123' (https://github.com/BlueBrain/Random123.git) registered for path 'external/Random123' | |
| Cloning into '/Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/external/Random123'... | |
| From https://github.com/BlueBrain/Random123 | |
| * branch b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1 -> FETCH_HEAD | |
| Submodule path 'external/Random123': checked out 'b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1' | |
| -- 3rd party project: using Random123 from "external/Random123" | |
| -- Found BISON: /usr/bin/bison (found version "2.3") | |
| -- Found FLEX: /usr/bin/flex (found suitable version "2.6.4", minimum required is "2.6") | |
| -- Found Readline: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include | |
| -- Found MPI_C: /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib (found version "3.1") | |
| -- Found MPI_CXX: /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib (found version "3.1") | |
| -- Found MPI: TRUE (found version "3.1") | |
| -- Detected OpenMPI 4.1.4 | |
| -- Found PythonInterp: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/venv/bin/python3 (found suitable version "3.10.8", minimum required is "3.8") | |
| -- Found PythonInterp: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/venv/bin/python3 (found suitable version "3.10.8", minimum required is "3") | |
| -- Found PythonLibs: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib | |
| -- Enabling sanitizers: address | |
| -- Sanitizer runtime library: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib | |
| -- Resolved shim /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/venv/bin/python3 to /opt/homebrew/Cellar/python@3.10/3.10.8/Frameworks/Python.framework/Versions/3.10/Resources/Python.app/Contents/MacOS/Python | |
| -- Performing Test CMAKE_HAVE_LIBC_PTHREAD | |
| -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success | |
| -- Found Threads: TRUE | |
| -- Building CoreNEURON | |
| -- Fetching git submodule external/CLI11: running git submodule update --init;--recursive;--depth;1 -- external/CLI11 | |
| Submodule 'external/CLI11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/CLI11' | |
| Cloning into '/Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/external/CLI11'... | |
| From https://github.com/CLIUtils/CLI11 | |
| * branch 291c58789c031208f08f4f261a858b5b7083e8e2 -> FETCH_HEAD | |
| Submodule path 'external/CLI11': checked out '291c58789c031208f08f4f261a858b5b7083e8e2' | |
| -- 3rd party project: using CLI11 from "external/CLI11" | |
| -- Found Git: /usr/bin/git (found version "2.37.0 (Apple Git-136)") | |
| -- Found Perl: /usr/bin/perl (found version "5.30.3") | |
| -- Could NOT find MOD2C (missing: MOD2C_PROJ) | |
| -- Sub-module mod2c missing : running git submodule update --init --recursive | |
| Submodule 'external/mod2c' (https://github.com/BlueBrain/mod2c) registered for path 'external/mod2c' | |
| Cloning into '/Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/external/mod2c'... | |
| Submodule path 'external/mod2c': checked out '284bd611a349b563a6ed8fb35a42e63e32860c0c' | |
| -- mod2c is used as APPLICATION_NAME | |
| -- Found FLEX: /usr/bin/flex (found version "2.6.4") | |
| -- Boost found, unit tests enabled | |
| -- | |
| -- CoreNEURON is enabled with following build configuration: | |
| -- --------------------+-------------------------------------------------------- | |
| -- Build option | Status | |
| -- --------------------+-------------------------------------------------------- | |
| -- CXX COMPILER | /usr/bin/g++ | |
| -- COMPILE FLAGS | -O1 -g -std=c++17 -DCORENEURON_BUILD -DNRNMPI=1 -DMPI_NO_CPPBIND=1 -DOMPI_SKIP_MPICXX=1 -DMPICH_SKIP_MPICXX=1 -DLAYOUT=0 -DDISABLE_HOC_EXP -DENABLE_SPLAYTREE_QUEUING -DCORENEURON_USE_LEGACY_UNITS=0 | |
| -- Build Type | SHARED | |
| -- MPI | ON | |
| -- DYNAMIC | OFF | |
| -- INC | /opt/homebrew/Cellar/open-mpi/4.1.4_2/include | |
| -- OpenMP | ON | |
| -- Use legacy units | OFF | |
| -- NMODL | OFF | |
| -- MOD2CPP PATH | /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/bin/mod2c_core | |
| -- GPU Support | OFF | |
| -- Auto Timeout | ON | |
| -- Wrap exp() | OFF | |
| -- SplayTree Queue | ON | |
| -- NetReceive Buffer | ON | |
| -- Caliper | OFF | |
| -- Likwid | OFF | |
| -- Unit Tests | ON | |
| -- Reporting | OFF | |
| -- --------------+-------------------------------------------------------------- | |
| -- | |
| Extracting link flags from target 'Threads::Threads', beware that this can be fragile. Got: | |
| Generating link flags from path /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib Got: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib | |
| Generating link flags from path /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib Got: /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
| -- Sub-module : missing /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/external/catch2 : running git submodule update --init | |
| Submodule 'external/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/catch2' | |
| Cloning into '/Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/external/catch2'... | |
| Submodule path 'external/catch2': checked out 'c4e3767e265808590986d5db6ca1b5532a7f3d13' | |
| -- Found pytest: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pytest (found version "7.2.2") | |
| -- Found pytest_cov: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/venv/lib/python3.10/site-packages/pytest_cov (found version "4.0.0") | |
| -- Fetching git submodule test/rxd/testdata: running git submodule update --init;--recursive;--depth;1 -- test/rxd/testdata | |
| Submodule 'test/rxd/testdata' (https://github.com/neuronsimulator/rxdtestdata) registered for path 'test/rxd/testdata' | |
| Cloning into '/Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/test/rxd/testdata'... | |
| From https://github.com/neuronsimulator/rxdtestdata | |
| * branch 95b8384cc4f7a2d0fa7e95430bff703d41bce841 -> FETCH_HEAD | |
| Submodule path 'test/rxd/testdata': checked out '95b8384cc4f7a2d0fa7e95430bff703d41bce841' | |
| -- 3rd party project: using rxd/testdata from "test/rxd/testdata" | |
| -- Found mpi4py: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/venv/lib/python3.10/site-packages/mpi4py (found version "3.1.4") | |
| -- Disabling coreneuron_modtests::fornetcon_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::direct_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::direct_hoc_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::spikes_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::spikes_file_mode_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::fast_imem_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::datareturn_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_units_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_netmove_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_pointer_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_watchrange_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_psolve_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_ba_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_natrans_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::spikes_mpi_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::spikes_mpi_file_mode_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::inputpresyn_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_subworlds_py_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_table_coreneuron_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_disc_coreneuron_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_function_table_coreneuron_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_kinetic_coreneuron_gpu: gpu not enabled | |
| -- Disabling reduced_dentate::coreneuron_gpu: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_offline_saverestore: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_python: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_offline: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_threads: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_threads_python: gpu not enabled | |
| -- Disabling testcorenrn_bbcore::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_bbcore::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_conc::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_conc::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_conc::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_deriv::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_deriv::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_gf::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_gf::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_gf::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_kin::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_kin::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_kin::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_patstim::coreneuron_gpu_offline_saverestore: gpu not enabled | |
| -- Disabling testcorenrn_patstim::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_vecplay::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_vecplay::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_vecevent::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_vecevent::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_watch::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_watch::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_watch::coreneuron_gpu_offline: gpu not enabled | |
| -- Could NOT find OpenSSL, try to set the path to OpenSSL root folder in the system variable OPENSSL_ROOT_DIR (missing: OPENSSL_CRYPTO_LIBRARY OPENSSL_INCLUDE_DIR) | |
| -- Skipping tqperf test as OpenSSL package not found | |
| -- | |
| -- Configured NEURON 9.0.0 | |
| -- | |
| -- You can now build NEURON using: | |
| -- cmake --build . --parallel 8 [--target TARGET] | |
| -- You might want to adjust the number of parallel build jobs for your system. | |
| -- Some non-default targets you might want to build: | |
| -- --------------+-------------------------------------------------------------- | |
| -- Target | Description | |
| -- --------------+-------------------------------------------------------------- | |
| -- install | Will install NEURON to: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install | |
| -- | Change the install location of NEURON using: | |
| -- | cmake <src_path> -DCMAKE_INSTALL_PREFIX=<install_path> | |
| -- docs | Build full docs. Calls targets: doxygen, notebooks, sphinx, notebooks-clean | |
| -- uninstall | Removes files installed by make install (todo) | |
| -- --------------+-------------------------------------------------------------- | |
| -- Build option | Status | |
| -- --------------+-------------------------------------------------------------- | |
| -- C COMPILER | /usr/bin/gcc | |
| -- CXX COMPILER | /usr/bin/g++ | |
| -- BUILD_TYPE | Custom (allowed: Custom;Debug;Release;RelWithDebInfo;Fast) | |
| -- COMPILE FLAGS | -O1 -g -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope | |
| -- Shared | ON | |
| -- Default units | modern units (2019 nist constants) | |
| -- MPI | ON | |
| -- DYNAMIC | OFF | |
| -- INC | /opt/homebrew/Cellar/open-mpi/4.1.4_2/include | |
| -- LIB | /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib | |
| -- Python | ON | |
| -- EXE | /opt/homebrew/Cellar/python@3.10/3.10.8/Frameworks/Python.framework/Versions/3.10/Resources/Python.app/Contents/MacOS/Python | |
| -- INC | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 | |
| -- LIB | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib | |
| -- MODULE | ON | |
| -- DYNAMIC | OFF | |
| -- Readline | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libreadline.tbd | |
| -- Curses | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libcurses.tbd;/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libform.tbd | |
| -- RX3D | OFF | |
| -- Interviews | OFF | |
| -- CoreNEURON | ON | |
| -- PATH | /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/coreneuron | |
| -- LINK FLAGS | -lcorenrnmech -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib | |
| -- Legacy Units| OFF | |
| -- Tests | ON | |
| -- --------------+-------------------------------------------------------------- | |
| -- See documentation : https://www.neuron.yale.edu/neuron/ | |
| -- --------------+-------------------------------------------------------------- | |
| -- | |
| -- Configuring done | |
| -- Generating done | |
| -- Build files have been written to: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build | |
| [32;1m$ ccache -z[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache -vs 2>/dev/null[0;m | |
| Cache directory: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/ccache | |
| Config file: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/ccache/ccache.conf | |
| System config file: /opt/homebrew/Cellar/ccache/4.7.2/etc/ccache.conf | |
| Stats updated: Thu Mar 16 17:01:04 2023 | |
| Local storage: | |
| Cache size (GB): 0.06 / 5.00 ( 1.15%) | |
| Files: 912 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ cmake --build . --parallel[0;m | |
| [0/2] Re-checking globbed directories... | |
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| [437/1469] [FLEX][nocmodllexer] Building scanner with flex 2.6.4 | |
| [438/1469] [BISON][ocparser] Building parser with bison 2.3 | |
| ../../../../src/oc/parse.ypp:382.11-392.19: warning: unused value: $3 | |
| ../../../../src/oc/parse.ypp:545.11-552.17: warning: unused value: $1 | |
| ../../../../src/oc/parse.ypp: conflicts: 96 shift/reduce | |
| [439/1469] [BISON][nocmodlparser] Building parser with bison 2.3 | |
| ../../../../src/nmodl/parse1.ypp: conflicts: 3 shift/reduce | |
| [440/1469] Generating ../oc/hocusr.h | |
| [441/1469] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/symbol.cpp.o | |
| [442/1469] cd /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.24.2/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.24.2/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h | |
| fatal: No names found, cannot describe anything. | |
| [443/1469] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/units1.cpp.o | |
| [444/1469] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/version.cpp.o | |
| [445/1469] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/units.cpp.o | |
| [446/1469] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/modlunit_generated/lex.cpp.o | |
| [447/1469] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/consist.cpp.o | |
| [448/1469] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/modlunit_generated/parse1.cpp.o | |
| [449/1469] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/deriv.cpp.o | |
| [450/1469] Linking CXX executable bin/modlunit | |
| [451/1469] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/discrete.cpp.o | |
| [452/1469] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/init.cpp.o | |
| [453/1469] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/list.cpp.o | |
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| [457/1469] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/netrec_discon.cpp.o | |
| [458/1469] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/parsact.cpp.o | |
| [459/1469] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/noccout.cpp.o | |
| [460/1469] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/nocpout.cpp.o | |
| [461/1469] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/simultan.cpp.o | |
| [462/1469] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/solve.cpp.o | |
| [463/1469] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/units.cpp.o | |
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| [465/1469] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/version.cpp.o | |
| [466/1469] Generating parallel/subworld/test/parallel_tests/test_subworld.py | |
| [467/1469] Generating parallel/partrans/test/pynrn/test_partrans.py | |
| [468/1469] Generating parallel/netpar/test/pynrn/test_hoc_po.py | |
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| [470/1469] Generating parallel/bas/test/parallel_tests/test_bas.py | |
| [471/1469] Generating coreneuron_standalone/test_nrn_corenrn_standalone/test/coreneuron/test_psolve.py | |
| [472/1469] Generating ../../compare_test_results.py | |
| [473/1469] Generating ../tests/ringtest/reference_data/spk1.100ms.std.ref | |
| [474/1469] Generating ../tests/testcorenrn/reference/out_bbcore.spk | |
| [475/1469] Generating ../tests/testcorenrn/reference/out_conc.spk | |
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| [478/1469] Generating ../tests/testcorenrn/reference/out_patstim.spk | |
| [479/1469] Generating ../tests/testcorenrn/reference/out_kin.spk | |
| [480/1469] Building CXX object src/nrnpython/CMakeFiles/rxdmath.dir/rxdmath.cpp.o | |
| [481/1469] Generating ../tests/testcorenrn/reference/out_vecplay.spk | |
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| [483/1469] Generating ../tests/testcorenrn/reference/out_vecevent.spk | |
| [484/1469] Generating ../tests/testcorenrn/reference/out_netstimdirect.spk | |
| [485/1469] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/lex.cpp.o | |
| [486/1469] Linking CXX shared library lib/librxdmath.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| [487/1469] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/diffeq.cpp.o | |
| [488/1469] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/parse1.cpp.o | |
| [489/1469] Linking CXX executable bin/nocmodl | |
| [490/1469] Generating ../nrnoc/exp2syn.cpp | |
| Translating /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/exp2syn.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/exp2syn.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/feature.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/feature.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
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| Translating /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/intfire2.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/intfire2.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/apcount.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/apcount.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/intfire1.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/intfire1.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/hh.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/hh.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/netstim.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/netstim.cpp | |
| Thread Safe | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
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| Translating /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/intfire4.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/intfire4.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/expsyn.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/expsyn.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/passive.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/passive.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/pattern.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/pattern.cpp | |
| Thread Safe | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
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| Translating /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/oclmp.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/oclmp.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/svclmp.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/svclmp.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/syn.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/syn.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/stim.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/stim.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/ppmark.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/ppmark.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/vclmp.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/src/nrnoc/vclmp.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
| Notice: LINEAR is not thread safe. | |
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| [565/1469] Linking CXX static library lib/libcoreneuron-core.a | |
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| [583/1469] Running nrnivmodl-core with internal mod files | |
| WARNING: No mod files found in '/Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/bin', compiling default ones only! | |
| [INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build MECHLIB_SUFFIX=internal MOD2CPP_BINARY=/Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/bin/mod2c_core MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
| Default NMODL flags: | |
| diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
| Translating arm64/corenrn/mod2c/hh.mod into arm64/corenrn/mod2c//hh.cpp | |
| Translating arm64/corenrn/mod2c/expsyn.mod into arm64/corenrn/mod2c//expsyn.cpp | |
| Translating arm64/corenrn/mod2c/netstim.mod into arm64/corenrn/mod2c//netstim.cpp | |
| Translating arm64/corenrn/mod2c/exp2syn.mod into arm64/corenrn/mod2c//exp2syn.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/passive.mod into arm64/corenrn/mod2c//passive.cpp | |
| Translating arm64/corenrn/mod2c/stim.mod into arm64/corenrn/mod2c//stim.cpp | |
| Translating arm64/corenrn/mod2c/pattern.mod into arm64/corenrn/mod2c//pattern.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/svclmp.mod into arm64/corenrn/mod2c//svclmp.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| arm64/corenrn/mod2c/exp2syn.cpp:563:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/exp2syn.cpp:640:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/exp2syn.cpp:501:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/expsyn.cpp:529:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/expsyn.cpp:606:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/expsyn.cpp:468:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 3 warnings generated. | |
| arm64/corenrn/mod2c/hh.cpp:555:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/hh.cpp:611:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/hh.cpp:489:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 3 warnings generated. | |
| 3 warnings generated. | |
| arm64/corenrn/mod2c/passive.cpp:342:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/stim.cpp:401:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/stim.cpp:328:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 1 warning generated. | |
| arm64/corenrn/mod2c/svclmp.cpp:502:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/svclmp.cpp:607:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/svclmp.cpp:434:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 2 warnings generated. | |
| 3 warnings generated. | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => Binary creating arm64/special-core | |
| [INFO] MOD files built successfully for CoreNEURON | |
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| [898/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cacur.mod | |
| [899/1469] Linking CXX executable bin/nrniv | |
| [900/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cadif.mod | |
| [901/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cadifusl.mod | |
| [902/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cagk.mod | |
| [903/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cagkftab.mod | |
| [904/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/expsynspine.mod | |
| [905/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/capmp.mod | |
| [906/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/fh.mod | |
| [907/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/fit1.mod | |
| [908/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/hh1.mod | |
| [909/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/gap.mod | |
| [910/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/hhvect.mod | |
| [911/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/inatest.mod | |
| [912/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nacum.mod | |
| [913/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/ionleak.mod | |
| [914/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nadifl.mod | |
| [915/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nacur.mod | |
| [916/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/obj_ex.mod | |
| [917/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nonlin.mod | |
| [918/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/passiv.mod | |
| [919/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/order.mod | |
| [920/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/rchan.mod | |
| [921/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/standard.inc | |
| [922/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/stim1.mod | |
| [923/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/str.mod | |
| [924/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/synpre.mod | |
| [925/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/syn1.mod | |
| [926/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/trivial.mod | |
| [927/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstdarray.mod | |
| [928/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstextrn.mod | |
| [929/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstpnt1.mod | |
| [930/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstpnt2.mod | |
| [931/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstvec.mod | |
| [932/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/vclmp1.mod | |
| [933/1469] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/vlag.mod | |
| [934/1469] Generating nrnivmodl/0a9c588b2ccd04e5c212673c38bcea9f5e31a93a1f22ff6d0b36f0b0baf5928f/atest.mod | |
| [935/1469] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/oc/hoc_interpreter.cpp.o | |
| [936/1469] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/cadif.mod | |
| [937/1469] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/disc.mod | |
| [938/1469] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/fornetcon.mod | |
| [939/1469] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/hhwatch.mod | |
| [940/1469] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/k3st.mod | |
| [941/1469] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/table.mod | |
| [942/1469] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/variabletypes.mod | |
| [943/1469] Running utility command for hoc_module | |
| INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python build_ext | |
| INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk | |
| WARNING:root:You are building a wheel with a Python built for macOS >=12.0.0. Your wheel won't run on older versions, consider using an official Python build from python.org | |
| WARNING:root:Setting MACOSX_DEPLOYMENT_TARGET=12.0 | |
| INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv'], 'language': 'c++'}) | |
| INFO:root:RX3D is DISABLED | |
| /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:85: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. | |
| dist.fetch_build_eggs(dist.setup_requires) | |
| /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:135: UserWarning: "/Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn" is shallow and may cause errors | |
| warnings.warn(f'"{wd.path}" is shallow and may cause errors') | |
| INFO:root:running build | |
| INFO:root:running build_py | |
| INFO:root:copying share/lib/python/neuron/hclass3.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/expect_hocerr.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/psection.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/config.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/units.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/sections.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/__init__.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/coreneuron.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/doc.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/gui.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/nonvint_block_supervisor.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:creating /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/metadata.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/morphml.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/xml2nrn.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/__init__.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/neuroml.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/rdxml.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/biophysics.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:creating /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/_subclass.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/test_all.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/__init__.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/test_neuron.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/test_vector.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/test_rxd.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:creating /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/tests/utils/__init__.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/tests/utils/strtobool.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/tests/utils/checkresult.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:creating /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rxdException.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/options.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/plugins.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rxdsection.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/species.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rxdmath.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rate.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/region.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/multiCompartmentReaction.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/constants.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/dimension3.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/__init__.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/section1d.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/export.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/initializer.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rangevar.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/geometry.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rxd.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/generalizedReaction.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/nodelist.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/node.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/gui.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/reaction.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:creating /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/crxd | |
| INFO:root:copying share/lib/python/neuron/crxd/__init__.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/crxd | |
| INFO:root:creating /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/setup_threejs.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/config.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/__init__.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/rangevar.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/plotshape.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/utilities.py -> /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:running build_ext | |
| INFO:root:==> Building Python extensions | |
| INFO:root:building 'neuron.hoc' extension | |
| INFO:root:/usr/bin/gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Isrc -Isrc/oc -Isrc/nrnpython -Isrc/nrnmpi -I/Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/src -I/Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/src/oc -I/Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/src/nrnpython -I/Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/src/nrnmpi -I/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 -c src/nrnpython/inithoc.cpp -o /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -std=c++17 | |
| INFO:root:/usr/bin/g++ -bundle -undefined dynamic_lookup -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -L/Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib -lnrniv -o /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python/neuron/hoc.cpython-310-darwin.so -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -Wl,-rpath,@loader_path/../../ | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| INFO:root:running build_scripts | |
| INFO:root:creating build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrniv -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrngui -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrniv-core -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrnpyenv.sh -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl-core -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/neurondemo -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/modlunit -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/idraw -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/sortspike -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/mkthreadsafe -> build/scripts-3.10 | |
| INFO:root:changing mode of build/scripts-3.10/nrniv from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/nrngui from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/nrniv-core from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/nrnpyenv.sh from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/nrnivmodl-core from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/neurondemo from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/nrnivmodl from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/modlunit from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/idraw from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/sortspike from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/mkthreadsafe from 644 to 755 | |
| [944/1469] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/axial.inc | |
| [945/1469] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/axial.mod | |
| [946/1469] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/axial_pp.mod | |
| [947/1469] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/bacur.mod | |
| [948/1469] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/banocur.mod | |
| [949/1469] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/fornetcon.mod | |
| [950/1469] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/invlfire.mod | |
| [951/1469] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/natrans.mod | |
| [952/1469] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/netmove.mod | |
| [953/1469] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/sample.mod | |
| [954/1469] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/unitstest.mod | |
| [955/1469] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/version_macros.mod | |
| [956/1469] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/watchrange.mod | |
| [957/1469] Building special[-core] for test group hoctests | |
| /usr/bin/xcrun | |
| /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/0a9c588b2ccd04e5c212673c38bcea9f5e31a93a1f22ff6d0b36f0b0baf5928f | |
| cfiles = | |
| Mod files: "./atest.mod" | |
| MODOBJS= ./atest.o | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././atest.mod | |
| Translating atest.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/0a9c588b2ccd04e5c212673c38bcea9f5e31a93a1f22ff6d0b36f0b0baf5928f/arm64/atest.cpp | |
| Thread Safe | |
| -> Compiling atest.cpp | |
| => LINKING shared library ./libnrnmech.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
| Successfully created arm64/special | |
| [958/1469] Generating hoctests/perf1_hoc/expect_err.hoc | |
| [959/1469] Generating hoctests/perf1_hoc/vardimtests/perf1.hoc | |
| [960/1469] Generating hoctests/test1_hoc/expect_err.hoc | |
| [961/1469] Generating hoctests/test1_hoc/vardimtests/test1.hoc | |
| [962/1469] Generating hoctests/test2_hoc/expect_err.hoc | |
| [963/1469] Generating hoctests/test2_hoc/vardimtests/test2.hoc | |
| [964/1469] Generating hoctests/test3_hoc/expect_err.hoc | |
| [965/1469] Generating hoctests/test3_hoc/vardimtests/test3.hoc | |
| [966/1469] Generating hoctests/test4_hoc/expect_err.hoc | |
| [967/1469] Generating hoctests/test4_hoc/vardimtests/test4.hoc | |
| [968/1469] Generating hoctests/test5_hoc/expect_err.hoc | |
| [969/1469] Generating hoctests/test5_hoc/vardimtests/test5.hoc | |
| [970/1469] Generating hoctests/test6_hoc/expect_err.hoc | |
| [971/1469] Building special[-core] for test group coverage_tests | |
| /usr/bin/xcrun | |
| /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51 | |
| cfiles = | |
| Mod files: "./ppxsrc.mod" | |
| MODOBJS= ./ppxsrc.o | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././ppxsrc.mod | |
| Translating ppxsrc.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/ppxsrc.cpp | |
| Thread Safe | |
| -> Compiling ppxsrc.cpp | |
| => LINKING shared library ./libnrnmech.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
| Successfully created arm64/special | |
| [972/1469] Generating hoctests/test6_hoc/vardimtests/test6.hoc | |
| [973/1469] Generating coverage_tests/cover_tests/test/cover/test_netcvode.json | |
| [974/1469] Generating coverage_tests/cover_tests/test/cover/test_netcvode.py | |
| [975/1469] Generating hoctests/test7_hoc/expect_err.hoc | |
| [976/1469] Generating hoctests/test7_hoc/vardimtests/test7.hoc | |
| [977/1469] Generating hoctests/test8_hoc/expect_err.hoc | |
| [978/1469] Generating hoctests/test8_hoc/vardimtests/test8.hoc | |
| [979/1469] Generating hoctests/test9_hoc/expect_err.hoc | |
| [980/1469] Generating hoctests/test9_hoc/vardimtests/test9.hoc | |
| [981/1469] Generating hoctests/test_kschan_py/tests/test_kschan.py | |
| [982/1469] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.json | |
| [983/1469] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.py | |
| [984/1469] Generating hoctests/test_nrniv-launch_py/tests/test_nrniv-launch.py | |
| [985/1469] Generating hoctests/test_shape_py/tests/test_shape.py | |
| [986/1469] Generating hoctests/test1_py/vardimtests/test1.py | |
| [987/1469] Generating hoctests/test2_py/vardimtests/test2.py | |
| [988/1469] Generating hoctests/test9_py/vardimtests/test9.py | |
| [989/1469] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Ca.mod | |
| [990/1469] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_CadepK.mod | |
| [991/1469] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KA.mod | |
| [992/1469] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRf.mod | |
| [993/1469] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRs.mod | |
| [994/1469] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Na.mod | |
| [995/1469] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/CaBK.mod | |
| [996/1469] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_M.mod | |
| [997/1469] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_UK.mod | |
| [998/1469] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_sAHP.mod | |
| [999/1469] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Gfluct3.mod | |
| [1000/1469] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/LcaMig.mod | |
| [1001/1469] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_KIn.mod | |
| [1002/1469] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_na8st.mod | |
| [1003/1469] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/bgka.mod | |
| [1004/1469] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ccanl.mod | |
| [1005/1469] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ggap.mod | |
| [1006/1469] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/gskch.mod | |
| [1007/1469] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/holdingi.mod | |
| [1008/1469] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/hyperde3.mod | |
| [1009/1469] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ichan2.mod | |
| [1010/1469] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/iconc_Ca.mod | |
| [1011/1469] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/kcaPR.mod | |
| [1012/1469] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/na3n.mod | |
| [1013/1469] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/nca.mod | |
| [1014/1469] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/spines.mod | |
| [1015/1469] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/tca.mod | |
| [1016/1469] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/vecevent.mod | |
| [1017/1469] Generating ../../nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/halfgap.mod | |
| [1018/1469] Building special[-core] for test group nmodl_tests | |
| /usr/bin/xcrun | |
| /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5 | |
| cfiles = | |
| Mod files: "./cadif.mod" "./disc.mod" "./fornetcon.mod" "./hhwatch.mod" "./k3st.mod" "./table.mod" "./variabletypes.mod" | |
| MODOBJS= ./cadif.o ./disc.o ./fornetcon.o ./hhwatch.o ./k3st.o ./table.o ./variabletypes.o | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././cadif.mod | |
| -> NMODL .././disc.mod | |
| -> NMODL .././fornetcon.mod | |
| Translating fornetcon.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/fornetcon.cpp | |
| Thread Safe | |
| Translating cadif.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/cadif.cpp | |
| -> NMODL .././hhwatch.mod | |
| Thread Safe | |
| Translating disc.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/disc.cpp | |
| Notice: DISCRETE is not thread safe. | |
| Notice: This mechanism cannot be used with CVODE | |
| -> NMODL .././k3st.mod | |
| -> NMODL .././table.mod | |
| Translating hhwatch.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/hhwatch.cpp | |
| Thread Safe | |
| -> NMODL .././variabletypes.mod | |
| Translating table.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/table.cpp | |
| Thread Safe | |
| Translating k3st.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/k3st.cpp | |
| NEURON's CVode method ignores conservation | |
| Thread Safe | |
| -> Compiling cadif.cpp | |
| -> Compiling disc.cpp | |
| Translating variabletypes.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/variabletypes.cpp | |
| Thread Safe | |
| -> Compiling fornetcon.cpp | |
| -> Compiling hhwatch.cpp | |
| -> Compiling k3st.cpp | |
| -> Compiling table.cpp | |
| -> Compiling variabletypes.cpp | |
| => LINKING shared library ./libnrnmech.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
| Successfully created arm64/special | |
| [1019/1469] Generating nmodl_tests/test_table/test/nmodl/test_table.py | |
| [1020/1469] Generating nmodl_tests/test_disc/test/nmodl/test_disc.py | |
| [1021/1469] Generating nmodl_tests/test_function_table/test/nmodl/test_function_table.py | |
| [1022/1469] Generating nmodl_tests/test_kinetic/test/nmodl/test_kinetic.py | |
| [1023/1469] Generating nmodl_tests_coreneuron/test_table_coreneuron_cpu/test/nmodl/test_table.py | |
| [1024/1469] Generating nmodl_tests_coreneuron/test_disc_coreneuron_cpu/test/nmodl/test_disc.py | |
| [1025/1469] Generating nmodl_tests_coreneuron/test_function_table_coreneuron_cpu/test/nmodl/test_function_table.py | |
| [1026/1469] Generating nmodl_tests_coreneuron/test_kinetic_coreneuron_cpu/test/nmodl/test_kinetic.py | |
| [1027/1469] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/Gfluct3.mod | |
| [1028/1469] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhderiv.mod | |
| [1029/1469] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhkin.mod | |
| [1030/1469] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhwatch.mod | |
| [1031/1469] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/nacum.mod | |
| [1032/1469] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/vecevent.mod | |
| [1033/1469] Building CXX object test/CMakeFiles/nrn-benchmarks.dir/benchmarks/threads/test_multicore.cpp.o | |
| [1034/1469] Generating share/nrn/demo/release/arm64/special, share/nrn/demo/release/arm64/libnrnmech.dylib | |
| /usr/bin/xcrun | |
| /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/share/nrn/demo/release | |
| cfiles = | |
| Mod files: "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "mcna.mod" "nacaex.mod" "nachan.mod" "release.mod" | |
| MODOBJS= ./cabpump.o ./cachan1.o ./camchan.o ./capump.o ./invlfire.o ./khhchan.o ./mcna.o ./nacaex.o ./nachan.o ./release.o | |
| -> Compiling mod_func.cpp | |
| -> NMODL ../cabpump.mod | |
| -> NMODL ../cachan1.mod | |
| -> NMODL ../camchan.mod | |
| Translating cabpump.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cabpump.cpp | |
| Translating cachan1.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cachan1.cpp | |
| Notice: Assignment to the GLOBAL variable, "vol", is not thread safe | |
| Thread Safe | |
| -> NMODL ../capump.mod | |
| -> NMODL ../invlfire.mod | |
| Translating camchan.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/camchan.cpp | |
| Thread Safe | |
| -> NMODL ../khhchan.mod | |
| Translating capump.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/capump.cpp | |
| Thread Safe | |
| Translating invlfire.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/invlfire.cpp | |
| Thread Safe | |
| -> NMODL ../mcna.mod | |
| -> NMODL ../nacaex.mod | |
| Translating khhchan.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/khhchan.cpp | |
| Thread Safe | |
| -> NMODL ../nachan.mod | |
| Translating mcna.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/mcna.cpp | |
| Translating nacaex.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nacaex.cpp | |
| Thread Safe | |
| Thread Safe | |
| -> NMODL ../release.mod | |
| -> Compiling cabpump.cpp | |
| Translating nachan.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nachan.cpp | |
| Thread Safe | |
| -> Compiling cachan1.cpp | |
| Translating release.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/release.cpp | |
| Thread Safe | |
| -> Compiling camchan.cpp | |
| -> Compiling capump.cpp | |
| -> Compiling invlfire.cpp | |
| -> Compiling khhchan.cpp | |
| -> Compiling mcna.cpp | |
| -> Compiling nacaex.cpp | |
| -> Compiling nachan.cpp | |
| -> Compiling release.cpp | |
| => LINKING shared library ./libnrnmech.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
| Successfully created arm64/special | |
| [1035/1469] Building special[-core] for test group pynrn | |
| /usr/bin/xcrun | |
| /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/1af75f65b49587ca82f7e78abedb19bd16fe6f35558aaf8fc576eedfbaa2628b | |
| cfiles = | |
| Mod files: "./follower.mod" "./unitstest.mod" "./version_macros.mod" | |
| MODOBJS= ./follower.o ./unitstest.o ./version_macros.o | |
| [INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
| Default NMODL flags: | |
| Translating arm64/corenrn/mod2c/exp2syn.mod into arm64/corenrn/mod2c//exp2syn.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
| Translating arm64/corenrn/mod2c/expsyn.mod into arm64/corenrn/mod2c//expsyn.cpp | |
| Translating arm64/corenrn/mod2c/follower.mod into arm64/corenrn/mod2c//follower.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/hh.mod into arm64/corenrn/mod2c//hh.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/passive.mod into arm64/corenrn/mod2c//passive.cpp | |
| Translating arm64/corenrn/mod2c/netstim.mod into arm64/corenrn/mod2c//netstim.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/stim.mod into arm64/corenrn/mod2c//stim.cpp | |
| Translating arm64/corenrn/mod2c/pattern.mod into arm64/corenrn/mod2c//pattern.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| Translating arm64/corenrn/mod2c/version_macros.mod into arm64/corenrn/mod2c//version_macros.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/svclmp.mod into arm64/corenrn/mod2c//svclmp.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/unitstest.mod into arm64/corenrn/mod2c//unitstest.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| arm64/corenrn/mod2c/expsyn.cpp:529:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/expsyn.cpp:606:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/expsyn.cpp:468:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/exp2syn.cpp:563:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/exp2syn.cpp:640:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/exp2syn.cpp:501:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 3 warnings generated. | |
| 3 warnings generated. | |
| arm64/corenrn/mod2c/hh.cpp:555:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/hh.cpp:611:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/hh.cpp:489:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 3 warnings generated. | |
| arm64/corenrn/mod2c/passive.cpp:342:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 1 warning generated. | |
| arm64/corenrn/mod2c/stim.cpp:401:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/stim.cpp:328:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 2 warnings generated. | |
| arm64/corenrn/mod2c/svclmp.cpp:502:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/svclmp.cpp:607:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/svclmp.cpp:434:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 3 warnings generated. | |
| arm64/corenrn/mod2c/unitstest.cpp:471:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/unitstest.cpp:410:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 2 warnings generated. | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => Binary creating arm64/special-core | |
| [INFO] MOD files built successfully for CoreNEURON | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././follower.mod | |
| -> NMODL .././unitstest.mod | |
| -> NMODL .././version_macros.mod | |
| Translating follower.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/1af75f65b49587ca82f7e78abedb19bd16fe6f35558aaf8fc576eedfbaa2628b/arm64/follower.cpp | |
| Thread Safe | |
| Translating unitstest.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/1af75f65b49587ca82f7e78abedb19bd16fe6f35558aaf8fc576eedfbaa2628b/arm64/unitstest.cpp | |
| Thread Safe | |
| -> Compiling follower.cpp | |
| Translating version_macros.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/1af75f65b49587ca82f7e78abedb19bd16fe6f35558aaf8fc576eedfbaa2628b/arm64/version_macros.cpp | |
| Thread Safe | |
| -> Compiling unitstest.cpp | |
| -> Compiling version_macros.cpp | |
| => LINKING shared library ./libnrnmech.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
| Successfully created arm64/special | |
| [1036/1469] Generating pynrn/basic_tests/test/pynrn/test_a_neuronoptions.py | |
| [1037/1469] Generating pynrn/basic_tests/test/pynrn/gui_pycallobject.py | |
| [1038/1469] Generating pynrn/basic_tests/test/pynrn/test_basic.py | |
| [1039/1469] Generating pynrn/basic_tests/test/pynrn/test_bbss.py | |
| [1040/1469] Generating pynrn/basic_tests/test/pynrn/test_hoc_po.py | |
| [1041/1469] Generating pynrn/basic_tests/test/pynrn/test_fast_imem.py | |
| [1042/1469] Generating pynrn/basic_tests/test/pynrn/test_netpar.py | |
| [1043/1469] Generating pynrn/basic_tests/test/pynrn/test_multigid.py | |
| [1044/1469] Generating pynrn/basic_tests/test/pynrn/test_nlayer.py | |
| [1045/1469] Generating pynrn/basic_tests/test/pynrn/test_nrnste.py | |
| [1046/1469] Generating pynrn/basic_tests/test/pynrn/test_partrans.py | |
| [1047/1469] Generating pynrn/basic_tests/test/pynrn/test_py2nrnstring.py | |
| [1048/1469] Generating pynrn/basic_tests/test/pynrn/test_pycallobject.py | |
| [1049/1469] Generating pynrn/basic_tests/test/pynrn/test_swc.py | |
| [1050/1469] Generating pynrn/basic_tests/test/pynrn/test_pyobj.py | |
| [1051/1469] Generating pynrn/basic_tests/test/pynrn/test_template_err.py | |
| [1052/1469] Generating pynrn/basic_tests/test/pynrn/test_units.py | |
| [1053/1469] Generating pynrn/basic_tests/test/pynrn/test_vector_api.py | |
| [1054/1469] Generating pynrn/basic_tests/test/pynrn/test_version_macros.py | |
| [1055/1469] Generating pynrn/basic_tests/test/pynrn/test_zptrlist.py | |
| [1056/1469] Building special[-core] for test group external_ringtest | |
| /usr/bin/xcrun | |
| /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff | |
| cfiles = | |
| Mod files: "./halfgap.mod" | |
| MODOBJS= ./halfgap.o | |
| [INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
| Default NMODL flags: | |
| Translating arm64/corenrn/mod2c/halfgap.mod into arm64/corenrn/mod2c//halfgap.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/exp2syn.mod into arm64/corenrn/mod2c//exp2syn.cpp | |
| Translating arm64/corenrn/mod2c/expsyn.mod into arm64/corenrn/mod2c//expsyn.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/netstim.mod into arm64/corenrn/mod2c//netstim.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
| Translating arm64/corenrn/mod2c/hh.mod into arm64/corenrn/mod2c//hh.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/passive.mod into arm64/corenrn/mod2c//passive.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/pattern.mod into arm64/corenrn/mod2c//pattern.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| Translating arm64/corenrn/mod2c/svclmp.mod into arm64/corenrn/mod2c//svclmp.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/stim.mod into arm64/corenrn/mod2c//stim.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| arm64/corenrn/mod2c/hh.cpp:555:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/hh.cpp:611:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/halfgap.cpp:387:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/exp2syn.cpp:563:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/hh.cpp:489:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/exp2syn.cpp:640:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/exp2syn.cpp:501:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/expsyn.cpp:529:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/expsyn.cpp:606:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/expsyn.cpp:468:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 1 warning generated. | |
| 3 warnings generated. | |
| 33 warnings generated. | |
| warnings generated. | |
| arm64/corenrn/mod2c/passive.cpp:342:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 1 warning generated. | |
| arm64/corenrn/mod2c/stim.cpp:401:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/stim.cpp:328:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 2 warnings generated. | |
| arm64/corenrn/mod2c/svclmp.cpp:502:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/svclmp.cpp:607:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/svclmp.cpp:434:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 3 warnings generated. | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => Binary creating arm64/special-core | |
| [INFO] MOD files built successfully for CoreNEURON | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././halfgap.mod | |
| Translating halfgap.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/halfgap.cpp | |
| Thread Safe | |
| -> Compiling halfgap.cpp | |
| => LINKING shared library ./libnrnmech.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
| Successfully created arm64/special | |
| [1057/1469] Generating ../../external_ringtest/neuron/args.py | |
| [1058/1469] Generating ../../external_ringtest/neuron/cell.hoc | |
| [1059/1469] Generating ../../external_ringtest/neuron/celluniform.hoc | |
| [1060/1469] Generating ../../external_ringtest/neuron/commonutils.py | |
| [1061/1469] Generating ../../external_ringtest/neuron/ranparm.py | |
| [1062/1469] Generating ../../external_ringtest/neuron/ring.py | |
| [1063/1469] Generating ../../external_ringtest/neuron/ringuniform.py | |
| [1064/1469] Generating ../../external_ringtest/neuron/ringtest.py | |
| [1065/1469] Generating ../../external_ringtest/neuron/settings.py | |
| [1066/1469] Generating ../../external_ringtest/neuron_mpi/args.py | |
| [1067/1469] Generating ../../external_ringtest/neuron_mpi/cell.hoc | |
| [1068/1469] Generating ../../external_ringtest/neuron_mpi/celluniform.hoc | |
| [1069/1469] Generating ../../external_ringtest/neuron_mpi/commonutils.py | |
| [1070/1469] Generating ../../external_ringtest/neuron_mpi/ranparm.py | |
| [1071/1469] Generating ../../external_ringtest/neuron_mpi/ring.py | |
| [1072/1469] Generating ../../external_ringtest/neuron_mpi/ringtest.py | |
| [1073/1469] Generating ../../external_ringtest/neuron_mpi/ringuniform.py | |
| [1074/1469] Generating ../../external_ringtest/neuron_mpi/settings.py | |
| [1075/1469] Generating ../../external_ringtest/neuron_mpi_python/args.py | |
| [1076/1469] Generating ../../external_ringtest/neuron_mpi_python/celluniform.hoc | |
| [1077/1469] Generating ../../external_ringtest/neuron_mpi_python/cell.hoc | |
| [1078/1469] Generating ../../external_ringtest/neuron_mpi_python/commonutils.py | |
| [1079/1469] Generating ../../external_ringtest/neuron_mpi_python/ranparm.py | |
| [1080/1469] Generating ../../external_ringtest/neuron_mpi_python/ring.py | |
| [1081/1469] Generating ../../external_ringtest/neuron_mpi_python/ringtest.py | |
| [1082/1469] Generating ../../external_ringtest/neuron_mpi_python/ringuniform.py | |
| [1083/1469] Generating ../../external_ringtest/neuron_mpi_python/settings.py | |
| [1084/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/args.py | |
| [1085/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/cell.hoc | |
| [1086/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/celluniform.hoc | |
| [1087/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/commonutils.py | |
| [1088/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ranparm.py | |
| [1089/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ring.py | |
| [1090/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringtest.py | |
| [1091/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringuniform.py | |
| [1092/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/settings.py | |
| [1093/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi/args.py | |
| [1094/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi/cell.hoc | |
| [1095/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi/celluniform.hoc | |
| [1096/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi/commonutils.py | |
| [1097/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi/ranparm.py | |
| [1098/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi/ring.py | |
| [1099/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringtest.py | |
| [1100/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringuniform.py | |
| [1101/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi/settings.py | |
| [1102/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/cell.hoc | |
| [1103/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/args.py | |
| [1104/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/celluniform.hoc | |
| [1105/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/commonutils.py | |
| [1106/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringtest.py | |
| [1107/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ranparm.py | |
| [1108/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ring.py | |
| [1109/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringuniform.py | |
| [1110/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/settings.py | |
| [1111/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/args.py | |
| [1112/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/cell.hoc | |
| [1113/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/celluniform.hoc | |
| [1114/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/commonutils.py | |
| [1115/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ranparm.py | |
| [1116/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ring.py | |
| [1117/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringuniform.py | |
| [1118/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringtest.py | |
| [1119/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/settings.py | |
| [1120/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/args.py | |
| [1121/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/cell.hoc | |
| [1122/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/celluniform.hoc | |
| [1123/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ranparm.py | |
| [1124/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/commonutils.py | |
| [1125/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ring.py | |
| [1126/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringtest.py | |
| [1127/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/args.py | |
| [1128/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringuniform.py | |
| [1129/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/settings.py | |
| [1130/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/cell.hoc | |
| [1131/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/celluniform.hoc | |
| [1132/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/commonutils.py | |
| [1133/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ranparm.py | |
| [1134/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ring.py | |
| [1135/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringtest.py | |
| [1136/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringuniform.py | |
| [1137/1469] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/settings.py | |
| [1138/1469] Building special[-core] for test group coreneuron_modtests | |
| /usr/bin/xcrun | |
| /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056 | |
| cfiles = | |
| Mod files: "./axial.mod" "./axial_pp.mod" "./bacur.mod" "./banocur.mod" "./fornetcon.mod" "./invlfire.mod" "./natrans.mod" "./netmove.mod" "./sample.mod" "./unitstest.mod" "./version_macros.mod" "./watchrange.mod" | |
| MODOBJS= ./axial.o ./axial_pp.o ./bacur.o ./banocur.o ./fornetcon.o ./invlfire.o ./natrans.o ./netmove.o ./sample.o ./unitstest.o ./version_macros.o ./watchrange.o | |
| [INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
| Default NMODL flags: | |
| diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
| Translating arm64/corenrn/mod2c/axial.mod into arm64/corenrn/mod2c//axial.cpp | |
| INCLUDEing arm64/corenrn/mod2c/axial.inc | |
| Translating arm64/corenrn/mod2c/axial_pp.mod into arm64/corenrn/mod2c//axial_pp.cpp | |
| INCLUDEing arm64/corenrn/mod2c/axial.inc | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/bacur.mod into arm64/corenrn/mod2c//bacur.cpp | |
| Warning: v undefined. (declared within VERBATIM?) | |
| Thread Safe | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/exp2syn.mod into arm64/corenrn/mod2c//exp2syn.cpp | |
| Translating arm64/corenrn/mod2c/banocur.mod into arm64/corenrn/mod2c//banocur.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Notice: This mechanism cannot be used with CVODE | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=1 | |
| Translating arm64/corenrn/mod2c/expsyn.mod into arm64/corenrn/mod2c//expsyn.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/fornetcon.mod into arm64/corenrn/mod2c//fornetcon.cpp | |
| Translating arm64/corenrn/mod2c/invlfire.mod into arm64/corenrn/mod2c//invlfire.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/hh.mod into arm64/corenrn/mod2c//hh.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/natrans.mod into arm64/corenrn/mod2c//natrans.cpp | |
| Translating arm64/corenrn/mod2c/netmove.mod into arm64/corenrn/mod2c//netmove.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/netstim.mod into arm64/corenrn/mod2c//netstim.cpp | |
| Translating arm64/corenrn/mod2c/passive.mod into arm64/corenrn/mod2c//passive.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/sample.mod into arm64/corenrn/mod2c//sample.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/pattern.mod into arm64/corenrn/mod2c//pattern.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| Translating arm64/corenrn/mod2c/stim.mod into arm64/corenrn/mod2c//stim.cpp | |
| Translating arm64/corenrn/mod2c/svclmp.mod into arm64/corenrn/mod2c//svclmp.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/unitstest.mod into arm64/corenrn/mod2c//unitstest.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/version_macros.mod into arm64/corenrn/mod2c//version_macros.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/watchrange.mod into arm64/corenrn/mod2c//watchrange.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| arm64/corenrn/mod2c/banocur.cpp:641:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| arm64/corenrn/mod2c/bacur.cpp:627:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/bacur.cpp:673:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/bacur.cpp:565:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| ^ | |
| arm64/corenrn/mod2c/banocur.cpp:548:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/banocur.cpp:351:3: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/banocur.cpp:383:3: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/banocur.cpp:414:3: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/banocur.cpp:467:3: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/banocur.cpp:498:3: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/bacur.cpp:363:3: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/bacur.cpp:395:3: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/bacur.cpp:426:3: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/bacur.cpp:485:3: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/bacur.cpp:516:3: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 8 warnings generated. | |
| 7 warnings generated. | |
| arm64/corenrn/mod2c/exp2syn.cpp:563:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/exp2syn.cpp:640:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/exp2syn.cpp:501:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/expsyn.cpp:529:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/expsyn.cpp:606:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/expsyn.cpp:468:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 3 warnings generated. | |
| arm64/corenrn/mod2c/hh.cpp:555:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/hh.cpp:611:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/hh.cpp:489:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 3 warnings generated. | |
| arm64/corenrn/mod2c/fornetcon.cpp:552:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 3 warnings generated. | |
| 1 warning generated. | |
| arm64/corenrn/mod2c/netmove.cpp:673:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/netmove.cpp:577:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 2 warnings generated. | |
| arm64/corenrn/mod2c/passive.cpp:342:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 1 warning generated. | |
| arm64/corenrn/mod2c/stim.cpp:401:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/stim.cpp:328:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 2 warnings generated. | |
| arm64/corenrn/mod2c/svclmp.cpp:502:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/svclmp.cpp:607:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/svclmp.cpp:434:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 3 warnings generated. | |
| arm64/corenrn/mod2c/unitstest.cpp:471:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/unitstest.cpp:410:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/watchrange.cpp:835:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/watchrange.cpp:651:3: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 2 warnings generated. | |
| 2 warnings generated. | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => Binary creating arm64/special-core | |
| [INFO] MOD files built successfully for CoreNEURON | |
| -> NMODL .././axial.mod | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././axial_pp.mod | |
| -> NMODL .././bacur.mod | |
| Translating axial_pp.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/axial_pp.cpp | |
| INCLUDEing axial.inc | |
| Thread Safe | |
| Translating bacur.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/bacur.cpp | |
| Thread Safe | |
| Translating axial.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/axial.cpp | |
| INCLUDEing axial.inc | |
| Thread Safe | |
| -> NMODL .././banocur.mod | |
| -> NMODL .././fornetcon.mod | |
| -> NMODL .././invlfire.mod | |
| Translating banocur.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/banocur.cpp | |
| Translating fornetcon.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/fornetcon.cpp | |
| Notice: This mechanism cannot be used with CVODE | |
| Thread Safe | |
| Thread Safe | |
| Translating invlfire.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/invlfire.cpp | |
| Thread Safe | |
| -> NMODL .././natrans.mod | |
| -> NMODL .././netmove.mod | |
| -> NMODL .././sample.mod | |
| Translating natrans.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/natrans.cpp | |
| Thread Safe | |
| Translating netmove.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/netmove.cpp | |
| Thread Safe | |
| -> NMODL .././unitstest.mod | |
| Translating sample.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/sample.cpp | |
| Thread Safe | |
| -> NMODL .././version_macros.mod | |
| -> NMODL .././watchrange.mod | |
| Translating unitstest.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/unitstest.cpp | |
| Thread Safe | |
| Translating version_macros.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/version_macros.cpp | |
| Thread Safe | |
| Translating watchrange.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/watchrange.cpp | |
| Thread Safe | |
| -> Compiling axial.cpp | |
| -> Compiling axial_pp.cpp | |
| -> Compiling bacur.cpp | |
| -> Compiling banocur.cpp | |
| -> Compiling fornetcon.cpp | |
| -> Compiling invlfire.cpp | |
| -> Compiling natrans.cpp | |
| -> Compiling netmove.cpp | |
| -> Compiling sample.cpp | |
| -> Compiling unitstest.cpp | |
| -> Compiling version_macros.cpp | |
| -> Compiling watchrange.cpp | |
| => LINKING shared library ./libnrnmech.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
| Successfully created arm64/special | |
| [1139/1469] Generating coreneuron_modtests/direct_hoc_cpu/test/coreneuron/test_direct.hoc | |
| [1140/1469] Generating coreneuron_modtests/version_macros/test/pynrn/test_version_macros.py | |
| [1141/1469] Generating coreneuron_modtests/spikes_py_cpu/test/coreneuron/test_spikes.py | |
| [1142/1469] Generating coreneuron_modtests/fornetcon_py_cpu/test/coreneuron/test_fornetcon.py | |
| [1143/1469] Generating coreneuron_modtests/direct_py_cpu/test/coreneuron/test_direct.py | |
| [1144/1469] Generating coreneuron_modtests/test_units_py_cpu/test/coreneuron/test_units.py | |
| [1145/1469] Generating coreneuron_modtests/spikes_file_mode_py_cpu/test/coreneuron/test_spikes.py | |
| [1146/1469] Generating coreneuron_modtests/datareturn_py_cpu/test/coreneuron/test_datareturn.py | |
| [1147/1469] Generating coreneuron_modtests/fast_imem_py_cpu/test/pynrn/test_fast_imem.py | |
| [1148/1469] Generating coreneuron_modtests/test_netmove_py_cpu/test/coreneuron/test_netmove.py | |
| [1149/1469] Generating coreneuron_modtests/test_pointer_py_cpu/test/coreneuron/test_pointer.py | |
| [1150/1469] Generating coreneuron_modtests/test_watchrange_py_cpu/test/coreneuron/test_watchrange.py | |
| [1151/1469] Generating coreneuron_modtests/test_psolve_py_cpu/test/coreneuron/test_psolve.py | |
| [1152/1469] Generating coreneuron_modtests/test_ba_py_cpu/test/coreneuron/test_ba.py | |
| [1153/1469] Generating coreneuron_modtests/spikes_mpi_py_cpu/test/coreneuron/test_spikes.py | |
| [1154/1469] Generating coreneuron_modtests/test_natrans_py_cpu/test/gjtests/test_natrans.py | |
| [1155/1469] Generating coreneuron_modtests/inputpresyn_py_cpu/test/coreneuron/test_spikes.py | |
| [1156/1469] Generating coreneuron_modtests/test_subworlds_py_cpu/test/coreneuron/test_subworlds.py | |
| [1157/1469] Generating coreneuron_modtests/spikes_mpi_file_mode_py_cpu/test/coreneuron/test_spikes.py | |
| [1158/1469] Building special[-core] for test group example_nmodl | |
| /usr/bin/xcrun | |
| /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2 | |
| cfiles = | |
| Mod files: "./argpass.mod" "./cabpump.mod" "./cachan.mod" "./cacum.mod" "./cacur.mod" "./cadif.mod" "./cadifusl.mod" "./cagk.mod" "./cagkftab.mod" "./capmp.mod" "./expsynspine.mod" "./fh.mod" "./fit1.mod" "./gap.mod" "./hh1.mod" "./hhvect.mod" "./inatest.mod" "./ionleak.mod" "./nacum.mod" "./nacur.mod" "./nadifl.mod" "./nonlin.mod" "./obj_ex.mod" "./order.mod" "./passiv.mod" "./rchan.mod" "./stim1.mod" "./str.mod" "./syn1.mod" "./synpre.mod" "./trivial.mod" "./tstdarray.mod" "./tstextrn.mod" "./tstpnt1.mod" "./tstpnt2.mod" "./tstvec.mod" "./vclmp1.mod" "./vlag.mod" | |
| MODOBJS= ./argpass.o ./cabpump.o ./cachan.o ./cacum.o ./cacur.o ./cadif.o ./cadifusl.o ./cagk.o ./cagkftab.o ./capmp.o ./expsynspine.o ./fh.o ./fit1.o ./gap.o ./hh1.o ./hhvect.o ./inatest.o ./ionleak.o ./nacum.o ./nacur.o ./nadifl.o ./nonlin.o ./obj_ex.o ./order.o ./passiv.o ./rchan.o ./stim1.o ./str.o ./syn1.o ./synpre.o ./trivial.o ./tstdarray.o ./tstextrn.o ./tstpnt1.o ./tstpnt2.o ./tstvec.o ./vclmp1.o ./vlag.o | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././argpass.mod | |
| -> NMODL .././cabpump.mod | |
| -> NMODL .././cachan.mod | |
| Translating argpass.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/argpass.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
| Translating cabpump.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cabpump.cpp | |
| Translating cachan.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cachan.cpp | |
| Thread Safe | |
| Notice: Assignment to the GLOBAL variable, "vol", is not thread safe | |
| -> NMODL .././cacum.mod | |
| -> NMODL .././cacur.mod | |
| -> NMODL .././cadif.mod | |
| Translating cacum.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacum.cpp | |
| Thread Safe | |
| Translating cadif.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadif.cpp | |
| Thread Safe | |
| Translating cacur.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacur.cpp | |
| Thread Safe | |
| -> NMODL .././cadifusl.mod | |
| -> NMODL .././cagk.mod | |
| -> NMODL .././cagkftab.mod | |
| Translating cadifusl.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadifusl.cpp | |
| Notice: Assignment to the GLOBAL variable, "vol", is not thread safe | |
| Translating cagk.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagk.cpp | |
| Translating cagkftab.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagkftab.cpp | |
| Thread Safe | |
| Thread Safe | |
| -> NMODL .././capmp.mod | |
| -> NMODL .././expsynspine.mod | |
| -> NMODL .././fh.mod | |
| Translating capmp.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/capmp.cpp | |
| NEURON's CVode method ignores conservation | |
| Translating expsynspine.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/expsynspine.cpp | |
| Thread Safe | |
| Notice: LINEAR is not thread safe. | |
| Translating fh.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fh.cpp | |
| INCLUDEing standard.inc | |
| Notice: Assignment to the GLOBAL variable, "inf", is not thread safe | |
| Notice: Assignment to the GLOBAL variable, "tau", is not thread safe | |
| -> NMODL .././fit1.mod | |
| -> NMODL .././gap.mod | |
| -> NMODL .././hh1.mod | |
| Translating gap.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/gap.cpp | |
| Notice: Use of POINTER is not thread safe. | |
| Translating fit1.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fit1.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
| -> NMODL .././inatest.mod | |
| -> NMODL .././hhvect.mod | |
| Translating hh1.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hh1.cpp | |
| Notice: This mechanism cannot be used with CVODE | |
| Notice: Assignment to the GLOBAL variable, "hexp", is not thread safe | |
| Notice: Assignment to the GLOBAL variable, "hinf", is not thread safe | |
| Notice: Assignment to the GLOBAL variable, "mexp", is not thread safe | |
| Notice: Assignment to the GLOBAL variable, "minf", is not thread safe | |
| Notice: Assignment to the GLOBAL variable, "nexp", is not thread safe | |
| Notice: Assignment to the GLOBAL variable, "ninf", is not thread safe | |
| Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON. | |
| Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON. | |
| Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON. | |
| -> NMODL .././ionleak.mod | |
| Translating inatest.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/inatest.cpp | |
| Translating hhvect.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hhvect.cpp | |
| Thread Safe | |
| Notice: This mechanism cannot be used with CVODE | |
| Thread Safe | |
| Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON. | |
| Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON. | |
| Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON. | |
| -> NMODL .././nacum.mod | |
| -> NMODL .././nacur.mod | |
| Translating nacum.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacum.cpp | |
| Thread Safe | |
| Translating ionleak.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/ionleak.cpp | |
| Thread Safe | |
| -> NMODL .././nadifl.mod | |
| Translating nacur.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacur.cpp | |
| Thread Safe | |
| -> NMODL .././nonlin.mod | |
| -> NMODL .././obj_ex.mod | |
| Translating nadifl.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nadifl.cpp | |
| Thread Safe | |
| Translating obj_ex.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/obj_ex.cpp | |
| Thread Safe | |
| Translating nonlin.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nonlin.cpp | |
| Notice: NONLINEAR is not thread safe. | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| -> NMODL .././order.mod | |
| -> NMODL .././passiv.mod | |
| -> NMODL .././rchan.mod | |
| Translating order.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/order.cpp | |
| Thread Safe | |
| Translating passiv.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/passiv.cpp | |
| -> NMODL .././stim1.mod | |
| Thread Safe | |
| Translating rchan.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/rchan.cpp | |
| Notice: normrand is not thread safe | |
| Notice: This mechanism cannot be used with CVODE | |
| -> NMODL .././str.mod | |
| -> NMODL .././syn1.mod | |
| Translating stim1.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/stim1.cpp | |
| Thread Safe | |
| Translating str.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/str.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
| -> NMODL .././synpre.mod | |
| -> NMODL .././trivial.mod | |
| Translating syn1.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/syn1.cpp | |
| Thread Safe | |
| -> NMODL .././tstdarray.mod | |
| Translating synpre.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/synpre.cpp | |
| Notice: Use of POINTER is not thread safe. | |
| Notice: VERBATIM blocks are not thread safe | |
| Notice: This mechanism cannot be used with CVODE | |
| Translating trivial.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/trivial.cpp | |
| -> NMODL .././tstextrn.mod | |
| -> NMODL .././tstpnt1.mod | |
| Translating tstdarray.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstdarray.cpp | |
| Thread Safe | |
| -> NMODL .././tstpnt2.mod | |
| -> NMODL .././tstvec.mod | |
| Translating tstpnt1.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt1.cpp | |
| Notice: Use of POINTER is not thread safe. | |
| Translating tstextrn.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstextrn.cpp | |
| Notice: Use of EXTERNAL is not thread safe. | |
| -> NMODL .././vclmp1.mod | |
| -> NMODL .././vlag.mod | |
| Translating tstpnt2.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt2.cpp | |
| Notice: Use of POINTER is not thread safe. | |
| -> Compiling argpass.cpp | |
| Translating tstvec.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstvec.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
| Translating vclmp1.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vclmp1.cpp | |
| Translating vlag.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vlag.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
| Thread Safe | |
| Notice: This mechanism cannot be used with CVODE | |
| Notice: LINEAR is not thread safe. | |
| -> Compiling cabpump.cpp | |
| -> Compiling cachan.cpp | |
| -> Compiling cacum.cpp | |
| -> Compiling cacur.cpp | |
| -> Compiling cadif.cpp | |
| -> Compiling cadifusl.cpp | |
| -> Compiling cagk.cpp | |
| -> Compiling cagkftab.cpp | |
| -> Compiling capmp.cpp | |
| -> Compiling expsynspine.cpp | |
| -> Compiling fh.cpp | |
| -> Compiling fit1.cpp | |
| -> Compiling gap.cpp | |
| -> Compiling hh1.cpp | |
| -> Compiling hhvect.cpp | |
| -> Compiling inatest.cpp | |
| -> Compiling ionleak.cpp | |
| -> Compiling nacum.cpp | |
| -> Compiling nacur.cpp | |
| -> Compiling nadifl.cpp | |
| -> Compiling nonlin.cpp | |
| -> Compiling obj_ex.cpp | |
| -> Compiling order.cpp | |
| -> Compiling passiv.cpp | |
| -> Compiling rchan.cpp | |
| -> Compiling stim1.cpp | |
| -> Compiling str.cpp | |
| -> Compiling syn1.cpp | |
| -> Compiling synpre.cpp | |
| -> Compiling trivial.cpp | |
| -> Compiling tstdarray.cpp | |
| -> Compiling tstextrn.cpp | |
| -> Compiling tstpnt1.cpp | |
| -> Compiling tstpnt2.cpp | |
| -> Compiling tstvec.cpp | |
| -> Compiling vclmp1.cpp | |
| -> Compiling vlag.cpp | |
| => LINKING shared library ./libnrnmech.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
| Successfully created arm64/special | |
| [1159/1469] Generating example_nmodl/ca_ap_hoc/ca_ap.hoc | |
| [1160/1469] Generating example_nmodl/cachan_hoc/cachan.hoc | |
| [1161/1469] Generating example_nmodl/cabpump_hoc/cabpump.hoc | |
| [1162/1469] Generating example_nmodl/cadif_hoc/cadif.hoc | |
| [1163/1469] Generating example_nmodl/cadif_hoc/cadif.ses | |
| [1164/1469] Generating example_nmodl/cadifusl_hoc/cadifusl.hoc | |
| [1165/1469] Generating example_nmodl/cadifusl2_hoc/cadifusl2.hoc | |
| [1166/1469] Generating example_nmodl/cadifusl1_hoc/cadifusl1.hoc | |
| [1167/1469] Generating example_nmodl/capmp_hoc/capmp.hoc | |
| [1168/1469] Generating example_nmodl/cagk_hoc/cagk.hoc | |
| [1169/1469] Generating example_nmodl/fh_hoc/fh.hoc | |
| [1170/1469] Generating example_nmodl/cv_hoc/cv.hoc | |
| [1171/1469] Generating example_nmodl/fit1_hoc/fit1.hoc | |
| [1172/1469] Generating example_nmodl/gap_hoc/gap.hoc | |
| [1173/1469] Generating example_nmodl/nadifl1_hoc/nadifl1.hoc | |
| [1174/1469] Generating example_nmodl/hhvect_hoc/hhvect.hoc | |
| [1175/1469] Generating example_nmodl/hh1_hoc/hh1.hoc | |
| [1176/1469] Generating example_nmodl/nadifl1_hoc/nadifl1.ses | |
| [1177/1469] Generating example_nmodl/nacum_hoc/nacum.hoc | |
| [1178/1469] Generating example_nmodl/nadifl2_hoc/nadifl2.hoc | |
| [1179/1469] Generating example_nmodl/nadifl2_hoc/nadifl2.ses | |
| [1180/1469] Generating example_nmodl/nadifl3_hoc/nadifl3.hoc | |
| [1181/1469] Generating example_nmodl/nadifl3_hoc/nadifl3.ses | |
| [1182/1469] Generating example_nmodl/nadifl4_hoc/nadifl4.hoc | |
| [1183/1469] Generating example_nmodl/nadifl4_hoc/nadifl4.ses | |
| [1184/1469] Generating example_nmodl/obj_ex_hoc/obj_ex.hoc | |
| [1185/1469] Generating example_nmodl/order_hoc/order.hoc | |
| [1186/1469] Generating example_nmodl/syn1_hoc/syn1.hoc | |
| [1187/1469] Generating example_nmodl/passiv_hoc/passiv.hoc | |
| [1188/1469] Generating example_nmodl/stim1_hoc/stim1.hoc | |
| [1189/1469] Generating example_nmodl/synpre_hoc/synpre.hoc | |
| [1190/1469] Generating example_nmodl/tstextrn_hoc/tstextrn.hoc | |
| [1191/1469] Generating example_nmodl/tstpnt1_hoc/tstpnt1.hoc | |
| [1192/1469] Generating example_nmodl/tstpnt2_hoc/tstpnt2.hoc | |
| [1193/1469] Generating example_nmodl/tstvec_hoc/tstvec.hoc | |
| [1194/1469] Generating example_nmodl/expsynspine_py/expsynspine.ses | |
| [1195/1469] Generating example_nmodl/expsynspine_py/expsynspine.py | |
| [1196/1469] Generating example_nmodl/cagkftab_py/cagkftab.py | |
| [1197/1469] Generating example_nmodl/nonlin_py/nonlin.py | |
| [1198/1469] Generating example_nmodl/vlag_py/vlag.py | |
| [1199/1469] Generating example_nmodl/tstpnt1_py/tstpnt1.py | |
| [1200/1469] Generating example_nmodl/tstpnt2_py/tstpnt2.py | |
| [1201/1469] Building special[-core] for test group testcorenrn_bbcore | |
| /usr/bin/xcrun | |
| /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876 | |
| cfiles = | |
| Mod files: "./Gfluct3.mod" "./hhderiv.mod" "./hhkin.mod" "./hhwatch.mod" "./nacum.mod" "./vecevent.mod" | |
| MODOBJS= ./Gfluct3.o ./hhderiv.o ./hhkin.o ./hhwatch.o ./nacum.o ./vecevent.o | |
| [INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
| Default NMODL flags: | |
| Translating arm64/corenrn/mod2c/exp2syn.mod into arm64/corenrn/mod2c//exp2syn.cpp | |
| Translating arm64/corenrn/mod2c/expsyn.mod into arm64/corenrn/mod2c//expsyn.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/Gfluct3.mod into arm64/corenrn/mod2c//Gfluct3.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
| Translating arm64/corenrn/mod2c/hh.mod into arm64/corenrn/mod2c//hh.cpp | |
| Translating arm64/corenrn/mod2c/hhderiv.mod into arm64/corenrn/mod2c//hhderiv.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/hhkin.mod into arm64/corenrn/mod2c//hhkin.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/hhwatch.mod into arm64/corenrn/mod2c//hhwatch.cpp | |
| Translating arm64/corenrn/mod2c/nacum.mod into arm64/corenrn/mod2c//nacum.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/passive.mod into arm64/corenrn/mod2c//passive.cpp | |
| Translating arm64/corenrn/mod2c/netstim.mod into arm64/corenrn/mod2c//netstim.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/pattern.mod into arm64/corenrn/mod2c//pattern.cpp | |
| Translating arm64/corenrn/mod2c/stim.mod into arm64/corenrn/mod2c//stim.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| Translating arm64/corenrn/mod2c/svclmp.mod into arm64/corenrn/mod2c//svclmp.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/vecevent.mod into arm64/corenrn/mod2c//vecevent.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| arm64/corenrn/mod2c/Gfluct3.cpp:994:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/Gfluct3.cpp:922:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/Gfluct3.cpp:490:3: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/exp2syn.cpp:563:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/exp2syn.cpp:640:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/exp2syn.cpp:501:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/hh.cpp:555:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/hh.cpp:611:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/hh.cpp:489:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/expsyn.cpp:529:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/expsyn.cpp:606:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/expsyn.cpp:468:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 3 warnings generated. | |
| 3 warnings generated. | |
| 3 warnings generated. | |
| 3 warnings generated. | |
| arm64/corenrn/mod2c/nacum.cpp:470:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/nacum.cpp:365:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/hhwatch.cpp:763:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/hhwatch.cpp:683:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/hhwatch.cpp:547:3: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/hhderiv.cpp:661:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/hhderiv.cpp:717:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/hhderiv.cpp:591:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 2 warnings generated. | |
| arm64/corenrn/mod2c/hhkin.cpp:730:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/hhkin.cpp:786:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/hhkin.cpp:664:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 3 warnings generated. | |
| 3 warnings generated. | |
| 3 warnings generated. | |
| arm64/corenrn/mod2c/passive.cpp:342:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 1 warning generated. | |
| arm64/corenrn/mod2c/stim.cpp:401:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/stim.cpp:328:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 2 warnings generated. | |
| arm64/corenrn/mod2c/svclmp.cpp:502:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/svclmp.cpp:607:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/svclmp.cpp:434:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 3 warnings generated. | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => Binary creating arm64/special-core | |
| [INFO] MOD files built successfully for CoreNEURON | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././Gfluct3.mod | |
| -> NMODL .././hhderiv.mod | |
| -> NMODL .././hhkin.mod | |
| Translating hhkin.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhkin.cpp | |
| Translating hhderiv.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhderiv.cpp | |
| Thread Safe | |
| Thread Safe | |
| Translating Gfluct3.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/Gfluct3.cpp | |
| Thread Safe | |
| -> NMODL .././hhwatch.mod | |
| -> NMODL .././nacum.mod | |
| -> NMODL .././vecevent.mod | |
| Translating nacum.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/nacum.cpp | |
| Translating vecevent.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/vecevent.cpp | |
| Thread Safe | |
| Thread Safe | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| Translating hhwatch.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhwatch.cpp | |
| Thread Safe | |
| -> Compiling Gfluct3.cpp | |
| -> Compiling hhderiv.cpp | |
| -> Compiling hhkin.cpp | |
| -> Compiling hhwatch.cpp | |
| -> Compiling nacum.cpp | |
| -> Compiling vecevent.cpp | |
| => LINKING shared library ./libnrnmech.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
| Successfully created arm64/special | |
| [1202/1469] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/testbbcore.hoc | |
| [1203/1469] Generating ../../testcorenrn_bbcore/neuron/testbbcore.hoc | |
| [1204/1469] Generating ../../testcorenrn_bbcore/neuron/common.hoc | |
| [1205/1469] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/common.hoc | |
| [1206/1469] Generating ../../testcorenrn_bbcore/neuron/defvar.hoc | |
| [1207/1469] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1208/1469] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/defvar.hoc | |
| [1209/1469] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/testbbcore.hoc | |
| [1210/1469] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1211/1469] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/common.hoc | |
| [1212/1469] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/defvar.hoc | |
| [1213/1469] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/testbbcore.hoc | |
| [1214/1469] Generating ../../testcorenrn_conc/neuron/common.hoc | |
| [1215/1469] Generating ../../testcorenrn_conc/neuron/defvar.hoc | |
| [1216/1469] Generating ../../testcorenrn_conc/coreneuron_cpu_online/common.hoc | |
| [1217/1469] Generating ../../testcorenrn_conc/neuron/testconc.hoc | |
| [1218/1469] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1219/1469] Generating ../../testcorenrn_conc/coreneuron_cpu_online/defvar.hoc | |
| [1220/1469] Generating ../../testcorenrn_conc/coreneuron_cpu_online/testconc.hoc | |
| [1221/1469] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/common.hoc | |
| [1222/1469] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1223/1469] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/testconc.hoc | |
| [1224/1469] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/defvar.hoc | |
| [1225/1469] Generating ../../testcorenrn_deriv/neuron/common.hoc | |
| [1226/1469] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/testconc.hoc | |
| [1227/1469] Generating ../../testcorenrn_deriv/neuron/defvar.hoc | |
| [1228/1469] Generating ../../testcorenrn_deriv/neuron/testderiv.hoc | |
| [1229/1469] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/common.hoc | |
| [1230/1469] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/testderiv.hoc | |
| [1231/1469] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1232/1469] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/defvar.hoc | |
| [1233/1469] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1234/1469] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/common.hoc | |
| [1235/1469] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/testderiv.hoc | |
| [1236/1469] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/testderiv.hoc | |
| [1237/1469] Generating ../../testcorenrn_gf/neuron/common.hoc | |
| [1238/1469] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/defvar.hoc | |
| [1239/1469] Generating ../../testcorenrn_gf/neuron/defvar.hoc | |
| [1240/1469] Generating ../../testcorenrn_gf/neuron/testgf.hoc | |
| [1241/1469] Generating ../../testcorenrn_gf/coreneuron_cpu_online/common.hoc | |
| [1242/1469] Generating ../../testcorenrn_gf/coreneuron_cpu_online/testgf.hoc | |
| [1243/1469] Generating ../../testcorenrn_gf/coreneuron_cpu_online/defvar.hoc | |
| [1244/1469] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1245/1469] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/testgf.hoc | |
| [1246/1469] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/common.hoc | |
| [1247/1469] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1248/1469] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/defvar.hoc | |
| [1249/1469] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/testgf.hoc | |
| [1250/1469] Generating ../../testcorenrn_kin/coreneuron_cpu_online/common.hoc | |
| [1251/1469] Generating ../../testcorenrn_kin/neuron/common.hoc | |
| [1252/1469] Generating ../../testcorenrn_kin/neuron/testkin.hoc | |
| [1253/1469] Generating ../../testcorenrn_kin/neuron/defvar.hoc | |
| [1254/1469] Generating ../../testcorenrn_kin/coreneuron_cpu_online/defvar.hoc | |
| [1255/1469] Generating ../../testcorenrn_kin/coreneuron_cpu_online/testkin.hoc | |
| [1256/1469] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1257/1469] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/common.hoc | |
| [1258/1469] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1259/1469] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/testkin.hoc | |
| [1260/1469] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/defvar.hoc | |
| [1261/1469] Generating ../../testcorenrn_patstim/neuron/common.hoc | |
| [1262/1469] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/testkin.hoc | |
| [1263/1469] Generating ../../testcorenrn_patstim/neuron/defvar.hoc | |
| [1264/1469] Generating ../../testcorenrn_patstim/neuron/testpatstim.hoc | |
| [1265/1469] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/testpatstim.hoc | |
| [1266/1469] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/defvar.hoc | |
| [1267/1469] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/common.hoc | |
| [1268/1469] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/testpatstim.hoc | |
| [1269/1469] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/common.hoc | |
| [1270/1469] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/defvar.hoc | |
| [1271/1469] Generating ../../testcorenrn_vecplay/neuron/defvar.hoc | |
| [1272/1469] Generating ../../testcorenrn_vecplay/neuron/common.hoc | |
| [1273/1469] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/defvar.hoc | |
| [1274/1469] Generating ../../testcorenrn_vecplay/neuron/testvecplay.hoc | |
| [1275/1469] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1276/1469] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/testvecplay.hoc | |
| [1277/1469] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/common.hoc | |
| [1278/1469] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/testvecplay.hoc | |
| [1279/1469] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1280/1469] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/defvar.hoc | |
| [1281/1469] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/testvecplay.hoc | |
| [1282/1469] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/common.hoc | |
| [1283/1469] Generating ../../testcorenrn_vecevent/neuron/defvar.hoc | |
| [1284/1469] Generating ../../testcorenrn_vecevent/neuron/common.hoc | |
| [1285/1469] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/common.hoc | |
| [1286/1469] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/defvar.hoc | |
| [1287/1469] Generating ../../testcorenrn_vecevent/neuron/testvecevent.hoc | |
| [1288/1469] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1289/1469] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/testvecevent.hoc | |
| [1290/1469] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1291/1469] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/testvecevent.hoc | |
| [1292/1469] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/common.hoc | |
| [1293/1469] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/defvar.hoc | |
| [1294/1469] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/testvecevent.hoc | |
| [1295/1469] Generating ../../testcorenrn_watch/neuron/defvar.hoc | |
| [1296/1469] Generating ../../testcorenrn_watch/neuron/common.hoc | |
| [1297/1469] Generating ../../testcorenrn_watch/coreneuron_cpu_online/common.hoc | |
| [1298/1469] Generating ../../testcorenrn_watch/neuron/testwatch.hoc | |
| [1299/1469] Generating ../../testcorenrn_watch/coreneuron_cpu_online/defvar.hoc | |
| [1300/1469] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1301/1469] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/common.hoc | |
| [1302/1469] Generating ../../testcorenrn_watch/coreneuron_cpu_online/testwatch.hoc | |
| [1303/1469] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/testwatch.hoc | |
| [1304/1469] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/defvar.hoc | |
| [1305/1469] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/testwatch.hoc | |
| [1306/1469] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1307/1469] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/common.hoc | |
| [1308/1469] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/common.hoc | |
| [1309/1469] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/defvar.hoc | |
| [1310/1469] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/defvar.hoc | |
| [1311/1469] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/testnetstimdirect.hoc | |
| [1312/1469] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/testnetstimdirect.hoc | |
| [1313/1469] Building special[-core] for test group reduced_dentate | |
| /usr/bin/xcrun | |
| /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead | |
| cfiles = | |
| Mod files: "./Aradi_Ca.mod" "./Aradi_CadepK.mod" "./Aradi_KA.mod" "./Aradi_KDRf.mod" "./Aradi_KDRs.mod" "./Aradi_Na.mod" "./CaBK.mod" "./DGC_M.mod" "./DGC_UK.mod" "./DGC_sAHP.mod" "./Gfluct3.mod" "./LcaMig.mod" "./SH_KIn.mod" "./SH_na8st.mod" "./bgka.mod" "./ccanl.mod" "./ggap.mod" "./gskch.mod" "./holdingi.mod" "./hyperde3.mod" "./ichan2.mod" "./iconc_Ca.mod" "./kcaPR.mod" "./na3n.mod" "./nca.mod" "./spines.mod" "./tca.mod" "./vecevent.mod" | |
| MODOBJS= ./Aradi_Ca.o ./Aradi_CadepK.o ./Aradi_KA.o ./Aradi_KDRf.o ./Aradi_KDRs.o ./Aradi_Na.o ./CaBK.o ./DGC_M.o ./DGC_UK.o ./DGC_sAHP.o ./Gfluct3.o ./LcaMig.o ./SH_KIn.o ./SH_na8st.o ./bgka.o ./ccanl.o ./ggap.o ./gskch.o ./holdingi.o ./hyperde3.o ./ichan2.o ./iconc_Ca.o ./kcaPR.o ./na3n.o ./nca.o ./spines.o ./tca.o ./vecevent.o | |
| [INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
| Default NMODL flags: | |
| Translating arm64/corenrn/mod2c/Aradi_Ca.mod into arm64/corenrn/mod2c//Aradi_Ca.cpp | |
| Translating arm64/corenrn/mod2c/Aradi_CadepK.mod into arm64/corenrn/mod2c//Aradi_CadepK.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/Aradi_KA.mod into arm64/corenrn/mod2c//Aradi_KA.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/Aradi_KDRs.mod into arm64/corenrn/mod2c//Aradi_KDRs.cpp | |
| Translating arm64/corenrn/mod2c/Aradi_KDRf.mod into arm64/corenrn/mod2c//Aradi_KDRf.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/Aradi_Na.mod into arm64/corenrn/mod2c//Aradi_Na.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/CaBK.mod into arm64/corenrn/mod2c//CaBK.cpp | |
| Translating arm64/corenrn/mod2c/DGC_M.mod into arm64/corenrn/mod2c//DGC_M.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/DGC_UK.mod into arm64/corenrn/mod2c//DGC_UK.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/DGC_sAHP.mod into arm64/corenrn/mod2c//DGC_sAHP.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/LcaMig.mod into arm64/corenrn/mod2c//LcaMig.cpp | |
| Translating arm64/corenrn/mod2c/Gfluct3.mod into arm64/corenrn/mod2c//Gfluct3.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/SH_KIn.mod into arm64/corenrn/mod2c//SH_KIn.cpp | |
| Translating arm64/corenrn/mod2c/SH_na8st.mod into arm64/corenrn/mod2c//SH_na8st.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| NEURON's CVode method ignores conservation | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/bgka.mod into arm64/corenrn/mod2c//bgka.cpp | |
| Translating arm64/corenrn/mod2c/ccanl.mod into arm64/corenrn/mod2c//ccanl.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/exp2syn.mod into arm64/corenrn/mod2c//exp2syn.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/expsyn.mod into arm64/corenrn/mod2c//expsyn.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/ggap.mod into arm64/corenrn/mod2c//ggap.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/gskch.mod into arm64/corenrn/mod2c//gskch.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/hh.mod into arm64/corenrn/mod2c//hh.cpp | |
| Translating arm64/corenrn/mod2c/holdingi.mod into arm64/corenrn/mod2c//holdingi.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/ichan2.mod into arm64/corenrn/mod2c//ichan2.cpp | |
| Translating arm64/corenrn/mod2c/hyperde3.mod into arm64/corenrn/mod2c//hyperde3.cpp | |
| Translating arm64/corenrn/mod2c/iconc_Ca.mod into arm64/corenrn/mod2c//iconc_Ca.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/kcaPR.mod into arm64/corenrn/mod2c//kcaPR.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/na3n.mod into arm64/corenrn/mod2c//na3n.cpp | |
| Translating arm64/corenrn/mod2c/nca.mod into arm64/corenrn/mod2c//nca.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/netstim.mod into arm64/corenrn/mod2c//netstim.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/passive.mod into arm64/corenrn/mod2c//passive.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/pattern.mod into arm64/corenrn/mod2c//pattern.cpp | |
| Translating arm64/corenrn/mod2c/stim.mod into arm64/corenrn/mod2c//stim.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| Translating arm64/corenrn/mod2c/spines.mod into arm64/corenrn/mod2c//spines.cpp | |
| Translating arm64/corenrn/mod2c/svclmp.mod into arm64/corenrn/mod2c//svclmp.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Translating arm64/corenrn/mod2c/tca.mod into arm64/corenrn/mod2c//tca.cpp | |
| Translating arm64/corenrn/mod2c/vecevent.mod into arm64/corenrn/mod2c//vecevent.cpp | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| Thread Safe | |
| cvode_emit=0 cvode_not_allowed=0 | |
| arm64/corenrn/mod2c/Aradi_KA.cpp:494:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/Aradi_KA.cpp:544:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/Aradi_KA.cpp:434:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/Aradi_CadepK.cpp:763:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/Aradi_CadepK.cpp:815:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/Aradi_CadepK.cpp:694:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/Aradi_Ca.cpp:1006:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/Aradi_Ca.cpp:1056:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/Aradi_Ca.cpp:939:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/Aradi_KDRf.cpp:482:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/Aradi_KDRf.cpp:532:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/Aradi_KDRf.cpp:422:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 3 warnings generated. | |
| 3 warnings generated. | |
| 3 warnings generated. | |
| 3 warnings generated. | |
| arm64/corenrn/mod2c/Aradi_KDRs.cpp:471:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/Aradi_KDRs.cpp:521:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/Aradi_KDRs.cpp:411:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 3 warnings generated. | |
| arm64/corenrn/mod2c/CaBK.cpp:627:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/CaBK.cpp:681:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/CaBK.cpp:564:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/Aradi_Na.cpp:469:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/Aradi_Na.cpp:520:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/Aradi_Na.cpp:408:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 3 warnings generated. | |
| arm64/corenrn/mod2c/DGC_M.cpp:633:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/DGC_M.cpp:683:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/DGC_M.cpp:573:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 3 warnings generated. | |
| 3 warnings generated. | |
| arm64/corenrn/mod2c/DGC_sAHP.cpp:640:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/DGC_sAHP.cpp:692:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/DGC_sAHP.cpp:574:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/DGC_UK.cpp:580:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/DGC_UK.cpp:627:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/DGC_UK.cpp:516:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/Gfluct3.cpp:995:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/Gfluct3.cpp:914:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/LcaMig.cpp:670:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/LcaMig.cpp:723:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/LcaMig.cpp:608:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 3 warnings generated. | |
| 3 warnings generated. | |
| 2 warnings generated. | |
| 3 warnings generated. | |
| arm64/corenrn/mod2c/SH_KIn.cpp:527:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/SH_KIn.cpp:578:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/SH_KIn.cpp:467:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/bgka.cpp:633:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/bgka.cpp:684:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/bgka.cpp:573:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 3 warnings generated. | |
| arm64/corenrn/mod2c/ccanl.cpp:665:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/ccanl.cpp:535:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/SH_na8st.cpp:993:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/SH_na8st.cpp:1044:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/SH_na8st.cpp:933:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 3 warnings generated. | |
| 2 warnings generated. | |
| 3 warnings generated. | |
| arm64/corenrn/mod2c/expsyn.cpp:529:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/expsyn.cpp:606:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/expsyn.cpp:468:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/exp2syn.cpp:563:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/exp2syn.cpp:640:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/exp2syn.cpp:501:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 3 warnings generated. | |
| 3 warnings generated. | |
| arm64/corenrn/mod2c/ggap.cpp:382:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/ggap.cpp:322:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 2 warnings generated. | |
| arm64/corenrn/mod2c/gskch.cpp:473:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/gskch.cpp:527:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/gskch.cpp:410:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 3 warnings generated. | |
| arm64/corenrn/mod2c/hh.cpp:555:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/hh.cpp:611:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/hh.cpp:489:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/holdingi.cpp:387:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/holdingi.cpp:319:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 2 warnings generated. | |
| 3 warnings generated. | |
| arm64/corenrn/mod2c/hyperde3.cpp:675:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/hyperde3.cpp:741:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/hyperde3.cpp:603:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 3 warnings generated. | |
| arm64/corenrn/mod2c/ichan2.cpp:673:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/ichan2.cpp:734:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/ichan2.cpp:603:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 3 warnings generated. | |
| arm64/corenrn/mod2c/iconc_Ca.cpp:572:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/iconc_Ca.cpp:464:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/kcaPR.cpp:556:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/kcaPR.cpp:608:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/kcaPR.cpp:491:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/na3n.cpp:766:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/na3n.cpp:817:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/na3n.cpp:706:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 3 warnings generated. | |
| 3 warnings generated. | |
| 2 warnings generated. | |
| arm64/corenrn/mod2c/nca.cpp:558:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/nca.cpp:609:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/nca.cpp:498:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 3 warnings generated. | |
| arm64/corenrn/mod2c/passive.cpp:342:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 1 warning generated. | |
| arm64/corenrn/mod2c/stim.cpp:401:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/stim.cpp:328:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 2 warnings generated. | |
| arm64/corenrn/mod2c/svclmp.cpp:502:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/svclmp.cpp:607:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/svclmp.cpp:434:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 3 warnings generated. | |
| arm64/corenrn/mod2c/tca.cpp:674:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/tca.cpp:727:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| arm64/corenrn/mod2c/tca.cpp:612:1: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] | |
| for (_iml = 0; _iml < _cntml_actual; ++_iml) { | |
| ^ | |
| 3 warnings generated. | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => Binary creating arm64/special-core | |
| [INFO] MOD files built successfully for CoreNEURON | |
| -> NMODL .././Aradi_Ca.mod | |
| -> NMODL .././Aradi_CadepK.mod | |
| -> NMODL .././Aradi_KA.mod | |
| -> Compiling mod_func.cpp | |
| Translating Aradi_Ca.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Ca.cpp | |
| Translating Aradi_KA.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KA.cpp | |
| Thread Safe | |
| Translating Aradi_CadepK.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_CadepK.cpp | |
| Thread Safe | |
| Thread Safe | |
| -> NMODL .././Aradi_KDRf.mod | |
| -> NMODL .././Aradi_KDRs.mod | |
| -> NMODL .././Aradi_Na.mod | |
| Translating Aradi_KDRs.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRs.cpp | |
| Translating Aradi_KDRf.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRf.cpp | |
| Thread Safe | |
| Translating Aradi_Na.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Na.cpp | |
| Thread Safe | |
| Thread Safe | |
| -> NMODL .././CaBK.mod | |
| -> NMODL .././DGC_M.mod | |
| -> NMODL .././DGC_UK.mod | |
| Translating DGC_M.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_M.cpp | |
| Translating DGC_UK.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_UK.cpp | |
| Thread Safe | |
| Translating CaBK.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/CaBK.cpp | |
| Thread Safe | |
| Thread Safe | |
| -> NMODL .././DGC_sAHP.mod | |
| -> NMODL .././Gfluct3.mod | |
| -> NMODL .././LcaMig.mod | |
| -> NMODL .././SH_KIn.mod | |
| Translating DGC_sAHP.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_sAHP.cpp | |
| Thread Safe | |
| Translating LcaMig.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/LcaMig.cpp | |
| Translating Gfluct3.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Gfluct3.cpp | |
| Thread Safe | |
| Thread Safe | |
| -> NMODL .././SH_na8st.mod | |
| -> NMODL .././ccanl.mod | |
| -> NMODL .././bgka.mod | |
| Translating SH_KIn.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_KIn.cpp | |
| Thread Safe | |
| -> NMODL .././ggap.mod | |
| Translating SH_na8st.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_na8st.cpp | |
| NEURON's CVode method ignores conservation | |
| Thread Safe | |
| Translating ccanl.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ccanl.cpp | |
| Translating bgka.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/bgka.cpp | |
| Thread Safe | |
| Thread Safe | |
| -> NMODL .././gskch.mod | |
| -> NMODL .././holdingi.mod | |
| -> NMODL .././hyperde3.mod | |
| Translating ggap.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ggap.cpp | |
| Thread Safe | |
| -> NMODL .././ichan2.mod | |
| Translating gskch.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/gskch.cpp | |
| Thread Safe | |
| Translating holdingi.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/holdingi.cpp | |
| Thread Safe | |
| Translating hyperde3.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/hyperde3.cpp | |
| Thread Safe | |
| -> NMODL .././iconc_Ca.mod | |
| -> NMODL .././kcaPR.mod | |
| -> NMODL .././na3n.mod | |
| Translating ichan2.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ichan2.cpp | |
| Thread Safe | |
| -> NMODL .././nca.mod | |
| Translating iconc_Ca.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/iconc_Ca.cpp | |
| Translating kcaPR.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/kcaPR.cpp | |
| Thread Safe | |
| Thread Safe | |
| -> NMODL .././spines.mod | |
| -> NMODL .././tca.mod | |
| Translating na3n.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/na3n.cpp | |
| Thread Safe | |
| Translating nca.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/nca.cpp | |
| -> NMODL .././vecevent.mod | |
| Thread Safe | |
| Translating spines.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/spines.cpp | |
| Thread Safe | |
| -> Compiling Aradi_Ca.cpp | |
| Translating tca.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/tca.cpp | |
| Thread Safe | |
| -> Compiling Aradi_CadepK.cpp | |
| -> Compiling Aradi_KA.cpp | |
| Translating vecevent.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/vecevent.cpp | |
| Thread Safe | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| -> Compiling Aradi_KDRf.cpp | |
| -> Compiling Aradi_KDRs.cpp | |
| -> Compiling Aradi_Na.cpp | |
| -> Compiling CaBK.cpp | |
| -> Compiling DGC_M.cpp | |
| -> Compiling DGC_UK.cpp | |
| -> Compiling DGC_sAHP.cpp | |
| -> Compiling Gfluct3.cpp | |
| -> Compiling LcaMig.cpp | |
| -> Compiling SH_KIn.cpp | |
| -> Compiling SH_na8st.cpp | |
| -> Compiling bgka.cpp | |
| -> Compiling ccanl.cpp | |
| -> Compiling gskch.cpp | |
| -> Compiling ggap.cpp | |
| -> Compiling holdingi.cpp | |
| -> Compiling hyperde3.cpp | |
| -> Compiling ichan2.cpp | |
| -> Compiling iconc_Ca.cpp | |
| -> Compiling kcaPR.cpp | |
| -> Compiling na3n.cpp | |
| -> Compiling nca.cpp | |
| -> Compiling spines.cpp | |
| -> Compiling tca.cpp | |
| -> Compiling vecevent.cpp | |
| => LINKING shared library ./libnrnmech.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
| Successfully created arm64/special | |
| [1314/1469] Generating ../../reduced_dentate/neuron/dat/soma_st8.dat | |
| [1315/1469] Generating ../../reduced_dentate/neuron/dat/DGC_spine_density.dat | |
| [1316/1469] Generating ../../reduced_dentate/neuron/dat/axon_st8.dat | |
| [1317/1469] Generating ../../reduced_dentate/neuron/datasets/Control/AAC.dat | |
| [1318/1469] Generating ../../reduced_dentate/neuron/commonutils.py | |
| [1319/1469] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_points.dat | |
| [1320/1469] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_topology.dat | |
| [1321/1469] Generating ../../reduced_dentate/neuron/datasets/Control/AACstim.dat | |
| [1322/1469] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoGC.dat | |
| [1323/1469] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoMC.dat | |
| [1324/1469] Generating ../../reduced_dentate/neuron/datasets/Control/BCstim.dat | |
| [1325/1469] Generating ../../reduced_dentate/neuron/datasets/Control/BC.dat | |
| [1326/1469] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoBC.dat | |
| [1327/1469] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoGC.dat | |
| [1328/1469] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoMC.dat | |
| [1329/1469] Generating ../../reduced_dentate/neuron/datasets/Control/GC.dat | |
| [1330/1469] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoBC.dat | |
| [1331/1469] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoAAC.dat | |
| [1332/1469] Generating ../../reduced_dentate/neuron/datasets/Control/GCstim.dat | |
| [1333/1469] Generating ../../reduced_dentate/neuron/datasets/Control/HCstim.dat | |
| [1334/1469] Generating ../../reduced_dentate/neuron/datasets/Control/HC.dat | |
| [1335/1469] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoMC.dat | |
| [1336/1469] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoGC.dat | |
| [1337/1469] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoHC.dat | |
| [1338/1469] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoMC.dat | |
| [1339/1469] Generating ../../reduced_dentate/neuron/datasets/Control/MC.dat | |
| [1340/1469] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoAAC.dat | |
| [1341/1469] Generating ../../reduced_dentate/neuron/datasets/Control/MCstim.dat | |
| [1342/1469] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoNGFC.dat | |
| [1343/1469] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoGC.dat | |
| [1344/1469] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoBC.dat | |
| [1345/1469] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoHC.dat | |
| [1346/1469] Generating ../../reduced_dentate/neuron/datasets/Control/MPP.dat | |
| [1347/1469] Generating ../../reduced_dentate/neuron/datasets/Control/MPP/MPPspiketrain.dat | |
| [1348/1469] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoMC.dat | |
| [1349/1469] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoAAC.dat | |
| [1350/1469] Generating ../../reduced_dentate/neuron/datasets/Control/MPPtoGC.dat | |
| [1351/1469] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCstim.dat | |
| [1352/1469] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoBC.dat | |
| [1353/1469] Generating ../../reduced_dentate/neuron/datasets/Control/NGFC.dat | |
| [1354/1469] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoGC.dat | |
| [1355/1469] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoNGFC.dat | |
| [1356/1469] Generating ../../reduced_dentate/neuron/datasets/Control/celltypes.dat | |
| [1357/1469] Generating ../../reduced_dentate/neuron/datasets/Control/connectivity.dat | |
| [1358/1469] Generating ../../reduced_dentate/neuron/datasets/Control/gapjunctions.dat | |
| [1359/1469] Generating ../../reduced_dentate/neuron/datasets/Control/gjBCtoBC.dat | |
| [1360/1469] Generating ../../reduced_dentate/neuron/datasets/Control/gjNGFCtoNGFC.dat | |
| [1361/1469] Generating ../../reduced_dentate/neuron/datasets/Control/gjHCtoHC.dat | |
| [1362/1469] Generating ../../reduced_dentate/neuron/datasets/Control/syndecay.dat | |
| [1363/1469] Generating ../../reduced_dentate/neuron/datasets/Control/stim.dat | |
| [1364/1469] Generating ../../reduced_dentate/neuron/datasets/Control/synerev.dat | |
| [1365/1469] Generating ../../reduced_dentate/neuron/datasets/Control/syncomp.dat | |
| [1366/1469] Generating ../../reduced_dentate/neuron/datasets/Control/syndend.dat | |
| [1367/1469] Generating ../../reduced_dentate/neuron/datasets/Control/synrise.dat | |
| [1368/1469] Generating ../../reduced_dentate/neuron/lib.hoc | |
| [1369/1469] Building CXX object test/CMakeFiles/testneuron.dir/common/catch2_main.cpp.o | |
| [1370/1469] Generating ../../reduced_dentate/neuron/datasets/Control/synweight.dat | |
| [1371/1469] Generating ../../reduced_dentate/neuron/main.hoc | |
| [1372/1469] Generating ../../reduced_dentate/neuron/run.hoc | |
| [1373/1469] Generating ../../reduced_dentate/neuron/parameters/Control.hoc | |
| [1374/1469] Generating ../../reduced_dentate/neuron/templates/AxoAxonicCell.hoc | |
| [1375/1469] Generating ../../reduced_dentate/neuron/templates/BasketCell.hoc | |
| [1376/1469] Generating ../../reduced_dentate/neuron/templates/DGC.hoc | |
| [1377/1469] Generating ../../reduced_dentate/neuron/templates/DGC_Biophysics_passive_na8st.hoc | |
| [1378/1469] Generating ../../reduced_dentate/neuron/templates/DGC_Parameters_passive_na8st.hoc | |
| [1379/1469] Generating ../../reduced_dentate/neuron/templates/HICAPCell.hoc | |
| [1380/1469] Generating ../../reduced_dentate/neuron/templates/DGC_Synapses.hoc | |
| [1381/1469] Generating ../../reduced_dentate/neuron/templates/Dict.hoc | |
| [1382/1469] Generating ../../reduced_dentate/neuron/templates/DGC_Morphology_from_file_na8st.hoc | |
| [1383/1469] Generating ../../reduced_dentate/neuron/templates/HIPPCell.hoc | |
| [1384/1469] Generating ../../reduced_dentate/neuron/templates/MPPCell.hoc | |
| [1385/1469] Generating ../../reduced_dentate/neuron/templates/MossyCell.hoc | |
| [1386/1469] Generating ../../reduced_dentate/neuron/templates/NGFCell.hoc | |
| [1387/1469] Generating ../../reduced_dentate/neuron/templates/defvar.hoc | |
| [1388/1469] Generating ../../reduced_dentate/neuron/templates/StimCell.hoc | |
| [1389/1469] Generating ../../reduced_dentate/neuron/templates/Value.hoc | |
| [1390/1469] Generating ../../reduced_dentate/neuron/templates/ranstream.hoc | |
| [1391/1469] Generating ../../reduced_dentate/coreneuron_cpu/commonutils.py | |
| [1392/1469] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_points.dat | |
| [1393/1469] Generating ../../reduced_dentate/coreneuron_cpu/dat/axon_st8.dat | |
| [1394/1469] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_spine_density.dat | |
| [1395/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACstim.dat | |
| [1396/1469] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_topology.dat | |
| [1397/1469] Generating ../../reduced_dentate/coreneuron_cpu/dat/soma_st8.dat | |
| [1398/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AAC.dat | |
| [1399/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BC.dat | |
| [1400/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCstim.dat | |
| [1401/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoGC.dat | |
| [1402/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoMC.dat | |
| [1403/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoBC.dat | |
| [1404/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoMC.dat | |
| [1405/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoGC.dat | |
| [1406/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GC.dat | |
| [1407/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCstim.dat | |
| [1408/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoBC.dat | |
| [1409/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoAAC.dat | |
| [1410/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoMC.dat | |
| [1411/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HC.dat | |
| [1412/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCstim.dat | |
| [1413/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoGC.dat | |
| [1414/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoHC.dat | |
| [1415/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoNGFC.dat | |
| [1416/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCstim.dat | |
| [1417/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoMC.dat | |
| [1418/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MC.dat | |
| [1419/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoAAC.dat | |
| [1420/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoHC.dat | |
| [1421/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoBC.dat | |
| [1422/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoGC.dat | |
| [1423/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP/MPPspiketrain.dat | |
| [1424/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPPtoGC.dat | |
| [1425/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoMC.dat | |
| [1426/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP.dat | |
| [1427/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFC.dat | |
| [1428/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCstim.dat | |
| [1429/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoAAC.dat | |
| [1430/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoBC.dat | |
| [1431/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/celltypes.dat | |
| [1432/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoNGFC.dat | |
| [1433/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoGC.dat | |
| [1434/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/connectivity.dat | |
| [1435/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gapjunctions.dat | |
| [1436/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjBCtoBC.dat | |
| [1437/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjHCtoHC.dat | |
| [1438/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjNGFCtoNGFC.dat | |
| [1439/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/stim.dat | |
| [1440/1469] Linking CXX executable bin/test/testneuron | |
| [1441/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syncomp.dat | |
| [1442/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndecay.dat | |
| [1443/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synrise.dat | |
| [1444/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synerev.dat | |
| [1445/1469] Generating ../../reduced_dentate/coreneuron_cpu/lib.hoc | |
| [1446/1469] Generating ../../reduced_dentate/coreneuron_cpu/main.hoc | |
| [1447/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndend.dat | |
| [1448/1469] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synweight.dat | |
| [1449/1469] Generating ../../reduced_dentate/coreneuron_cpu/parameters/Control.hoc | |
| [1450/1469] Generating ../../reduced_dentate/coreneuron_cpu/run.hoc | |
| [1451/1469] Generating ../../reduced_dentate/coreneuron_cpu/templates/AxoAxonicCell.hoc | |
| [1452/1469] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC.hoc | |
| [1453/1469] Generating ../../reduced_dentate/coreneuron_cpu/templates/BasketCell.hoc | |
| [1454/1469] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Biophysics_passive_na8st.hoc | |
| [1455/1469] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Parameters_passive_na8st.hoc | |
| [1456/1469] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Morphology_from_file_na8st.hoc | |
| [1457/1469] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Synapses.hoc | |
| [1458/1469] Generating ../../reduced_dentate/coreneuron_cpu/templates/HICAPCell.hoc | |
| [1459/1469] Generating ../../reduced_dentate/coreneuron_cpu/templates/HIPPCell.hoc | |
| [1460/1469] Generating ../../reduced_dentate/coreneuron_cpu/templates/MossyCell.hoc | |
| [1461/1469] Generating ../../reduced_dentate/coreneuron_cpu/templates/Dict.hoc | |
| [1462/1469] Generating ../../reduced_dentate/coreneuron_cpu/templates/NGFCell.hoc | |
| [1463/1469] Generating ../../reduced_dentate/coreneuron_cpu/templates/MPPCell.hoc | |
| [1464/1469] Generating ../../reduced_dentate/coreneuron_cpu/templates/StimCell.hoc | |
| [1465/1469] Generating ../../reduced_dentate/coreneuron_cpu/templates/defvar.hoc | |
| [1466/1469] Generating ../../reduced_dentate/coreneuron_cpu/templates/Value.hoc | |
| [1467/1469] Generating ../../reduced_dentate/coreneuron_cpu/templates/ranstream.hoc | |
| [1468/1469] Building CXX object test/CMakeFiles/nrn-benchmarks.dir/common/catch2_main.cpp.o | |
| [1469/1469] Linking CXX executable bin/test/nrn-benchmarks | |
| [32;1m$ ccache -vs 2>/dev/null[0;m | |
| Cache directory: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/ccache | |
| Config file: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/ccache/ccache.conf | |
| System config file: /opt/homebrew/Cellar/ccache/4.7.2/etc/ccache.conf | |
| Stats updated: Thu Mar 16 17:02:21 2023 | |
| Cacheable calls: 503 / 503 (100.0%) | |
| Hits: 0 / 503 ( 0.00%) | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Misses: 503 / 503 (100.0%) | |
| Successful lookups: | |
| Direct: 0 / 503 ( 0.00%) | |
| Preprocessed: 0 / 503 ( 0.00%) | |
| Local storage: | |
| Cache size (GB): 0.11 / 5.00 ( 2.30%) | |
| Files: 1824 | |
| Hits: 0 / 503 ( 0.00%) | |
| Misses: 503 / 503 (100.0%) | |
| Reads: 1006 | |
| Writes: 913 | |
| [32;1m$ echo $'[install]\nprefix='>src/nrnpython/setup.cfg[0;m | |
| [32;1m$ cat src/nrnpython/setup.cfg[0;m | |
| [install] | |
| prefix= | |
| [32;1m$ ctest --output-on-failure[0;m | |
| Test project /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build | |
| Start 120: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 128: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| 1/179 Test #128: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 0.97 sec | |
| Start 134: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| 2/179 Test #134: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 0.28 sec | |
| Start 140: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| 3/179 Test #140: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 0.30 sec | |
| Start 152: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| 4/179 Test #120: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 1.62 sec | |
| Start 146: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| 5/179 Test #152: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 0.29 sec | |
| Start 113: external_ringtest::neuron | |
| 6/179 Test #146: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 0.30 sec | |
| Start 157: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| 7/179 Test #157: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 0.35 sec | |
| Start 163: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 8/179 Test #163: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 0.30 sec | |
| Start 175: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 9/179 Test #175: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 0.30 sec | |
| Start 114: external_ringtest::neuron_mpi | |
| 10/179 Test #113: external_ringtest::neuron .......................................... Passed 1.04 sec | |
| Start 124: testcorenrn_bbcore::neuron | |
| 11/179 Test #124: testcorenrn_bbcore::neuron ......................................... Passed 0.30 sec | |
| Start 125: testcorenrn_bbcore::coreneuron_cpu_online | |
| 12/179 Test #125: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 0.57 sec | |
| Start 126: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 13/179 Test #114: external_ringtest::neuron_mpi ...................................... Passed 0.92 sec | |
| Start 115: external_ringtest::neuron_mpi_python | |
| 14/179 Test #126: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 0.89 sec | |
| Start 127: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 15/179 Test #127: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 0.41 sec | |
| Start 130: testcorenrn_conc::neuron | |
| 16/179 Test #115: external_ringtest::neuron_mpi_python ............................... Passed 1.36 sec | |
| Start 116: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
| 17/179 Test #130: testcorenrn_conc::neuron ........................................... Passed 0.31 sec | |
| Start 131: testcorenrn_conc::coreneuron_cpu_online | |
| 18/179 Test #131: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 0.59 sec | |
| Start 132: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 19/179 Test #132: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 0.61 sec | |
| Start 133: testcorenrn_conc::coreneuron_cpu_offline | |
| 20/179 Test #133: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 0.27 sec | |
| Start 136: testcorenrn_deriv::neuron | |
| 21/179 Test #116: external_ringtest::coreneuron_cpu_mpi_offline_saverestore .......... Passed 1.80 sec | |
| Start 117: external_ringtest::coreneuron_cpu_mpi | |
| 22/179 Test #136: testcorenrn_deriv::neuron .......................................... Passed 0.30 sec | |
| Start 137: testcorenrn_deriv::coreneuron_cpu_online | |
| 23/179 Test #137: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 0.57 sec | |
| Start 138: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 24/179 Test #117: external_ringtest::coreneuron_cpu_mpi .............................. Passed 0.89 sec | |
| Start 118: external_ringtest::coreneuron_cpu_mpi_python | |
| 25/179 Test #138: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 0.72 sec | |
| Start 139: testcorenrn_deriv::coreneuron_cpu_offline | |
| 26/179 Test #139: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 0.38 sec | |
| Start 148: testcorenrn_kin::neuron | |
| 27/179 Test #148: testcorenrn_kin::neuron ............................................ Passed 0.30 sec | |
| Start 149: testcorenrn_kin::coreneuron_cpu_online | |
| 28/179 Test #118: external_ringtest::coreneuron_cpu_mpi_python ....................... Passed 1.31 sec | |
| Start 119: external_ringtest::coreneuron_cpu_mpi_offline | |
| 29/179 Test #119: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 0.51 sec | |
| Start 142: testcorenrn_gf::neuron | |
| 30/179 Test #149: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 0.56 sec | |
| Start 150: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 31/179 Test #142: testcorenrn_gf::neuron ............................................. Passed 0.46 sec | |
| Start 143: testcorenrn_gf::coreneuron_cpu_online | |
| 32/179 Test #150: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 0.60 sec | |
| Start 151: testcorenrn_kin::coreneuron_cpu_offline | |
| 33/179 Test #151: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 0.27 sec | |
| Start 1: cmd_interface_test | |
| 34/179 Test #143: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 0.70 sec | |
| Start 144: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 35/179 Test #1: cmd_interface_test ................................................. Passed 0.37 sec | |
| Start 2: interleave_info_constructor_test | |
| 36/179 Test #2: interleave_info_constructor_test ................................... Passed 0.25 sec | |
| Start 3: alignment_test | |
| 37/179 Test #3: alignment_test ..................................................... Passed 0.24 sec | |
| Start 4: queuing_test | |
| 38/179 Test #144: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 0.83 sec | |
| Start 145: testcorenrn_gf::coreneuron_cpu_offline | |
| 39/179 Test #4: queuing_test ....................................................... Passed 0.24 sec | |
| Start 5: test-solver | |
| 40/179 Test #145: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 0.38 sec | |
| Start 154: testcorenrn_patstim::neuron | |
| 41/179 Test #5: test-solver ........................................................ Passed 0.64 sec | |
| Start 6: lfp_test | |
| 42/179 Test #154: testcorenrn_patstim::neuron ........................................ Passed 0.33 sec | |
| Start 155: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
| 43/179 Test #6: lfp_test ........................................................... Passed 0.51 sec | |
| Start 7: unit_tests::testneuron | |
| 44/179 Test #7: unit_tests::testneuron ............................................. Passed 0.27 sec | |
| Start 8: ringtest | |
| 45/179 Test #155: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............ Passed 0.85 sec | |
| Start 156: testcorenrn_patstim::coreneuron_cpu_offline | |
| 46/179 Test #8: ringtest ........................................................... Passed 0.21 sec | |
| Start 9: connect_dend | |
| 47/179 Test #9: connect_dend ....................................................... Passed 0.16 sec | |
| Start 10: mpi_init::nrniv_mpiopt | |
| 48/179 Test #156: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 0.28 sec | |
| Start 159: testcorenrn_vecplay::neuron | |
| 49/179 Test #10: mpi_init::nrniv_mpiopt ............................................. Passed 0.33 sec | |
| Start 11: mpi_init::nrniv_nrnmpi_init | |
| 50/179 Test #159: testcorenrn_vecplay::neuron ........................................ Passed 0.31 sec | |
| Start 160: testcorenrn_vecplay::coreneuron_cpu_online | |
| 51/179 Test #11: mpi_init::nrniv_nrnmpi_init ........................................ Passed 0.33 sec | |
| Start 12: mpi_init::python_nrnmpi_init | |
| 52/179 Test #160: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 0.83 sec | |
| Start 161: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 53/179 Test #12: mpi_init::python_nrnmpi_init ....................................... Passed 0.78 sec | |
| Start 13: mpi_init::python_mpienv | |
| 54/179 Test #161: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 0.74 sec | |
| Start 162: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 55/179 Test #13: mpi_init::python_mpienv ............................................ Passed 0.75 sec | |
| Start 14: mpi_init::nrniv_mpiexec_mpiopt | |
| 56/179 Test #162: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 0.37 sec | |
| Start 171: testcorenrn_watch::neuron | |
| 57/179 Test #14: mpi_init::nrniv_mpiexec_mpiopt ..................................... Passed 0.26 sec | |
| Start 15: mpi_init::nrniv_mpiexec_nrnmpi_init | |
| 58/179 Test #171: testcorenrn_watch::neuron .......................................... Passed 0.33 sec | |
| Start 172: testcorenrn_watch::coreneuron_cpu_online | |
| 59/179 Test #15: mpi_init::nrniv_mpiexec_nrnmpi_init ................................ Passed 0.26 sec | |
| Start 16: mpi_init::python_mpiexec_nrnmpi_init | |
| 60/179 Test #172: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 0.76 sec | |
| Start 173: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 61/179 Test #16: mpi_init::python_mpiexec_nrnmpi_init ............................... Passed 0.86 sec | |
| Start 17: mpi_init::python_mpiexec_mpienv | |
| 62/179 Test #173: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 0.72 sec | |
| Start 174: testcorenrn_watch::coreneuron_cpu_offline | |
| 63/179 Test #17: mpi_init::python_mpiexec_mpienv .................................... Passed 0.82 sec | |
| Start 18: pynrn::basic_tests | |
| 64/179 Test #174: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 0.34 sec | |
| Start 177: testcorenrn_netstimdirect::direct_netstimdirect | |
| 65/179 Test #177: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 0.89 sec | |
| Start 178: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 66/179 Test #178: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 0.87 sec | |
| Start 19: coverage_tests::cover_tests | |
| Start 20: example_nmodl::ca_ap_hoc | |
| 67/179 Test #20: example_nmodl::ca_ap_hoc ........................................... Passed 0.49 sec | |
| Start 21: example_nmodl::cabpump_hoc | |
| 68/179 Test #21: example_nmodl::cabpump_hoc ......................................... Passed 0.26 sec | |
| Start 22: example_nmodl::cachan_hoc | |
| 69/179 Test #22: example_nmodl::cachan_hoc .......................................... Passed 0.14 sec | |
| Start 23: example_nmodl::cadif_hoc | |
| 70/179 Test #19: coverage_tests::cover_tests ........................................ Passed 0.91 sec | |
| Start 24: example_nmodl::cadifusl_hoc | |
| 71/179 Test #24: example_nmodl::cadifusl_hoc ........................................ Passed 0.14 sec | |
| Start 25: example_nmodl::cadifusl1_hoc | |
| 72/179 Test #23: example_nmodl::cadif_hoc ........................................... Passed 0.17 sec | |
| Start 26: example_nmodl::cadifusl2_hoc | |
| 73/179 Test #26: example_nmodl::cadifusl2_hoc ....................................... Passed 0.14 sec | |
| Start 27: example_nmodl::cagk_hoc | |
| 74/179 Test #25: example_nmodl::cadifusl1_hoc ....................................... Passed 0.15 sec | |
| Start 28: example_nmodl::capmp_hoc | |
| 75/179 Test #27: example_nmodl::cagk_hoc ............................................ Passed 0.14 sec | |
| Start 29: example_nmodl::cv_hoc | |
| 76/179 Test #28: example_nmodl::capmp_hoc ........................................... Passed 0.16 sec | |
| Start 30: example_nmodl::fh_hoc | |
| 77/179 Test #29: example_nmodl::cv_hoc .............................................. Passed 0.13 sec | |
| Start 31: example_nmodl::fit1_hoc | |
| 78/179 Test #30: example_nmodl::fh_hoc .............................................. Passed 0.14 sec | |
| Start 32: example_nmodl::gap_hoc | |
| 79/179 Test #31: example_nmodl::fit1_hoc ............................................ Passed 0.13 sec | |
| Start 33: example_nmodl::hh1_hoc | |
| 80/179 Test #32: example_nmodl::gap_hoc ............................................. Passed 0.14 sec | |
| Start 34: example_nmodl::hhvect_hoc | |
| 81/179 Test #33: example_nmodl::hh1_hoc ............................................. Passed 0.14 sec | |
| Start 35: example_nmodl::nacum_hoc | |
| 82/179 Test #34: example_nmodl::hhvect_hoc .......................................... Passed 0.14 sec | |
| Start 36: example_nmodl::nadifl1_hoc | |
| 83/179 Test #35: example_nmodl::nacum_hoc ........................................... Passed 0.14 sec | |
| Start 37: example_nmodl::nadifl2_hoc | |
| 84/179 Test #36: example_nmodl::nadifl1_hoc ......................................... Passed 0.16 sec | |
| Start 38: example_nmodl::nadifl3_hoc | |
| 85/179 Test #37: example_nmodl::nadifl2_hoc ......................................... Passed 0.17 sec | |
| Start 39: example_nmodl::nadifl4_hoc | |
| 86/179 Test #38: example_nmodl::nadifl3_hoc ......................................... Passed 0.16 sec | |
| Start 40: example_nmodl::obj_ex_hoc | |
| 87/179 Test #39: example_nmodl::nadifl4_hoc ......................................... Passed 0.17 sec | |
| Start 41: example_nmodl::order_hoc | |
| 88/179 Test #40: example_nmodl::obj_ex_hoc .......................................... Passed 0.14 sec | |
| Start 42: example_nmodl::passiv_hoc | |
| 89/179 Test #42: example_nmodl::passiv_hoc .......................................... Passed 0.14 sec | |
| Start 43: example_nmodl::stim1_hoc | |
| 90/179 Test #41: example_nmodl::order_hoc ........................................... Passed 0.16 sec | |
| Start 44: example_nmodl::syn1_hoc | |
| 91/179 Test #43: example_nmodl::stim1_hoc ........................................... Passed 0.13 sec | |
| Start 45: example_nmodl::synpre_hoc | |
| 92/179 Test #44: example_nmodl::syn1_hoc ............................................ Passed 0.13 sec | |
| Start 46: example_nmodl::tstextrn_hoc | |
| 93/179 Test #45: example_nmodl::synpre_hoc .......................................... Passed 0.14 sec | |
| Start 47: example_nmodl::tstpnt1_hoc | |
| 94/179 Test #46: example_nmodl::tstextrn_hoc ........................................ Passed 0.13 sec | |
| Start 48: example_nmodl::tstpnt2_hoc | |
| 95/179 Test #48: example_nmodl::tstpnt2_hoc ......................................... Passed 0.13 sec | |
| Start 49: example_nmodl::tstvec_hoc | |
| 96/179 Test #47: example_nmodl::tstpnt1_hoc ......................................... Passed 0.14 sec | |
| Start 50: example_nmodl::cagkftab_py | |
| 97/179 Test #49: example_nmodl::tstvec_hoc .......................................... Passed 0.13 sec | |
| Start 51: example_nmodl::expsynspine_py | |
| 98/179 Test #51: example_nmodl::expsynspine_py ...................................... Passed 0.66 sec | |
| Start 52: example_nmodl::nonlin_py | |
| 99/179 Test #52: example_nmodl::nonlin_py ........................................... Passed 1.33 sec | |
| Start 53: example_nmodl::tstpnt1_py | |
| 100/179 Test #18: pynrn::basic_tests ................................................. Passed 6.74 sec | |
| Start 54: example_nmodl::tstpnt2_py | |
| 101/179 Test #53: example_nmodl::tstpnt1_py .......................................... Passed 0.62 sec | |
| Start 55: example_nmodl::vlag_py | |
| 102/179 Test #54: example_nmodl::tstpnt2_py .......................................... Passed 0.60 sec | |
| Start 56: hoctests::perf1_hoc | |
| 103/179 Test #55: example_nmodl::vlag_py ............................................. Passed 0.51 sec | |
| Start 57: hoctests::test1_hoc | |
| 104/179 Test #57: hoctests::test1_hoc ................................................ Passed 0.26 sec | |
| Start 58: hoctests::test2_hoc | |
| 105/179 Test #58: hoctests::test2_hoc ................................................ Passed 0.19 sec | |
| Start 59: hoctests::test3_hoc | |
| 106/179 Test #50: example_nmodl::cagkftab_py ......................................... Passed 3.80 sec | |
| Start 60: hoctests::test4_hoc | |
| 107/179 Test #59: hoctests::test3_hoc ................................................ Passed 0.15 sec | |
| Start 61: hoctests::test5_hoc | |
| 108/179 Test #60: hoctests::test4_hoc ................................................ Passed 0.13 sec | |
| Start 62: hoctests::test6_hoc | |
| 109/179 Test #61: hoctests::test5_hoc ................................................ Passed 0.13 sec | |
| Start 63: hoctests::test7_hoc | |
| 110/179 Test #56: hoctests::perf1_hoc ................................................ Passed 1.30 sec | |
| Start 64: hoctests::test8_hoc | |
| 111/179 Test #62: hoctests::test6_hoc ................................................ Passed 0.13 sec | |
| Start 65: hoctests::test9_hoc | |
| 112/179 Test #63: hoctests::test7_hoc ................................................ Passed 0.13 sec | |
| Start 66: hoctests::test_kschan_py | |
| 113/179 Test #64: hoctests::test8_hoc ................................................ Passed 0.13 sec | |
| Start 67: hoctests::test_neurondemo_py | |
| 114/179 Test #65: hoctests::test9_hoc ................................................ Passed 0.13 sec | |
| Start 68: hoctests::test_nrniv-launch_py | |
| 115/179 Test #68: hoctests::test_nrniv-launch_py ..................................... Passed 0.49 sec | |
| Start 69: hoctests::test_shape_py | |
| 116/179 Test #67: hoctests::test_neurondemo_py ....................................... Passed 0.61 sec | |
| Start 70: hoctests::test1_py | |
| 117/179 Test #66: hoctests::test_kschan_py ........................................... Passed 0.70 sec | |
| Start 71: hoctests::test2_py | |
| 118/179 Test #69: hoctests::test_shape_py ............................................ Passed 0.62 sec | |
| Start 72: hoctests::test9_py | |
| 119/179 Test #70: hoctests::test1_py ................................................. Passed 0.66 sec | |
| Start 77: coreneuron_standalone::test_nrn_corenrn_standalone | |
| 120/179 Test #71: hoctests::test2_py ................................................. Passed 0.76 sec | |
| Start 78: nmodl_tests::test_table | |
| 121/179 Test #72: hoctests::test9_py ................................................. Passed 0.61 sec | |
| Start 79: nmodl_tests::test_disc | |
| 122/179 Test #77: coreneuron_standalone::test_nrn_corenrn_standalone ................. Passed 1.13 sec | |
| Start 80: nmodl_tests::test_function_table | |
| 123/179 Test #78: nmodl_tests::test_table ............................................ Passed 1.24 sec | |
| Start 81: nmodl_tests::test_kinetic | |
| 124/179 Test #79: nmodl_tests::test_disc ............................................. Passed 0.91 sec | |
| Start 82: coreneuron_modtests::version_macros | |
| 125/179 Test #80: nmodl_tests::test_function_table ................................... Passed 0.88 sec | |
| Start 83: coreneuron_modtests::fornetcon_py_cpu | |
| 126/179 Test #81: nmodl_tests::test_kinetic .......................................... Passed 1.03 sec | |
| Start 84: coreneuron_modtests::direct_py_cpu | |
| 127/179 Test #82: coreneuron_modtests::version_macros ................................ Passed 1.33 sec | |
| Start 85: coreneuron_modtests::direct_hoc_cpu | |
| 128/179 Test #83: coreneuron_modtests::fornetcon_py_cpu .............................. Passed 1.30 sec | |
| Start 86: coreneuron_modtests::spikes_py_cpu | |
| 129/179 Test #84: coreneuron_modtests::direct_py_cpu ................................. Passed 0.97 sec | |
| Start 87: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 130/179 Test #85: coreneuron_modtests::direct_hoc_cpu ................................ Passed 0.67 sec | |
| Start 88: coreneuron_modtests::fast_imem_py_cpu | |
| 131/179 Test #87: coreneuron_modtests::spikes_file_mode_py_cpu ....................... Passed 0.86 sec | |
| Start 89: coreneuron_modtests::datareturn_py_cpu | |
| 132/179 Test #86: coreneuron_modtests::spikes_py_cpu ................................. Passed 0.91 sec | |
| Start 90: coreneuron_modtests::test_units_py_cpu | |
| 133/179 Test #88: coreneuron_modtests::fast_imem_py_cpu .............................. Passed 0.95 sec | |
| Start 91: coreneuron_modtests::test_netmove_py_cpu | |
| 134/179 Test #90: coreneuron_modtests::test_units_py_cpu ............................. Passed 0.89 sec | |
| Start 92: coreneuron_modtests::test_pointer_py_cpu | |
| 135/179 Test #89: coreneuron_modtests::datareturn_py_cpu ............................. Passed 1.13 sec | |
| Start 93: coreneuron_modtests::test_watchrange_py_cpu | |
| 136/179 Test #91: coreneuron_modtests::test_netmove_py_cpu ........................... Passed 1.33 sec | |
| Start 94: coreneuron_modtests::test_psolve_py_cpu | |
| 137/179 Test #93: coreneuron_modtests::test_watchrange_py_cpu ........................ Passed 1.12 sec | |
| Start 95: coreneuron_modtests::test_ba_py_cpu | |
| 138/179 Test #94: coreneuron_modtests::test_psolve_py_cpu ............................ Passed 0.94 sec | |
| Start 96: coreneuron_modtests::test_natrans_py_cpu | |
| 139/179 Test #95: coreneuron_modtests::test_ba_py_cpu ................................ Passed 0.81 sec | |
| Start 101: nmodl_tests_coreneuron::test_table_coreneuron_cpu | |
| 140/179 Test #96: coreneuron_modtests::test_natrans_py_cpu ........................... Passed 0.84 sec | |
| Start 102: nmodl_tests_coreneuron::test_disc_coreneuron_cpu | |
| 141/179 Test #101: nmodl_tests_coreneuron::test_table_coreneuron_cpu .................. Passed 0.84 sec | |
| Start 103: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu | |
| 142/179 Test #102: nmodl_tests_coreneuron::test_disc_coreneuron_cpu ................... Passed 0.86 sec | |
| Start 104: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu | |
| 143/179 Test #92: coreneuron_modtests::test_pointer_py_cpu ........................... Passed 3.50 sec | |
| Start 105: modlunit_unitstest | |
| 144/179 Test #105: modlunit_unitstest ................................................. Passed 0.22 sec | |
| Start 106: modlunit_hh | |
| 145/179 Test #106: modlunit_hh ........................................................ Passed 0.11 sec | |
| Start 107: modlunit_stim | |
| 146/179 Test #103: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu ......... Passed 0.92 sec | |
| Start 108: modlunit_pattern | |
| 147/179 Test #107: modlunit_stim ...................................................... Passed 0.10 sec | |
| Start 109: external_nrntest | |
| 148/179 Test #108: modlunit_pattern ................................................... Passed 0.09 sec | |
| Start 129: testcorenrn_bbcore::compare_results | |
| 149/179 Test #104: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu ................ Passed 0.86 sec | |
| Start 135: testcorenrn_conc::compare_results | |
| 150/179 Test #135: testcorenrn_conc::compare_results .................................. Passed 0.15 sec | |
| Start 141: testcorenrn_deriv::compare_results | |
| 151/179 Test #129: testcorenrn_bbcore::compare_results ................................ Passed 0.20 sec | |
| Start 147: testcorenrn_gf::compare_results | |
| 152/179 Test #141: testcorenrn_deriv::compare_results ................................. Passed 0.02 sec | |
| Start 153: testcorenrn_kin::compare_results | |
| 153/179 Test #147: testcorenrn_gf::compare_results .................................... Passed 0.02 sec | |
| Start 158: testcorenrn_patstim::compare_results | |
| 154/179 Test #153: testcorenrn_kin::compare_results ................................... Passed 0.02 sec | |
| Start 164: testcorenrn_vecplay::compare_results | |
| 155/179 Test #158: testcorenrn_patstim::compare_results ............................... Passed 0.02 sec | |
| Start 176: testcorenrn_watch::compare_results | |
| 156/179 Test #164: testcorenrn_vecplay::compare_results ............................... Passed 0.02 sec | |
| Start 179: testcorenrn_netstimdirect::compare_results | |
| 157/179 Test #176: testcorenrn_watch::compare_results ................................. Passed 0.02 sec | |
| 158/179 Test #179: testcorenrn_netstimdirect::compare_results ......................... Passed 0.02 sec | |
| Start 74: parallel::partrans | |
| 159/179 Test #74: parallel::partrans ................................................. Passed 0.81 sec | |
| Start 75: parallel::netpar | |
| 160/179 Test #75: parallel::netpar ................................................... Passed 0.84 sec | |
| Start 76: parallel::bas | |
| 161/179 Test #76: parallel::bas ...................................................... Passed 3.00 sec | |
| Start 97: coreneuron_modtests::spikes_mpi_py_cpu | |
| 162/179 Test #97: coreneuron_modtests::spikes_mpi_py_cpu ............................. Passed 1.40 sec | |
| Start 98: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 163/179 Test #98: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................... Passed 1.01 sec | |
| Start 99: coreneuron_modtests::inputpresyn_py_cpu | |
| 164/179 Test #99: coreneuron_modtests::inputpresyn_py_cpu ............................ Passed 1.10 sec | |
| 165/179 Test #109: external_nrntest ................................................... Passed 30.23 sec | |
| Start 169: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 166/179 Test #169: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 0.32 sec | |
| Start 110: reduced_dentate::neuron | |
| 167/179 Test #110: reduced_dentate::neuron ............................................ Passed 16.42 sec | |
| Start 111: reduced_dentate::coreneuron_cpu | |
| 168/179 Test #111: reduced_dentate::coreneuron_cpu .................................... Passed 15.88 sec | |
| Start 121: external_ringtest::coreneuron_cpu_mpi_threads | |
| 169/179 Test #121: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 0.94 sec | |
| Start 122: external_ringtest::coreneuron_cpu_mpi_threads_python | |
| 170/179 Test #122: external_ringtest::coreneuron_cpu_mpi_threads_python ............... Passed 1.11 sec | |
| Start 165: testcorenrn_vecevent::neuron | |
| 171/179 Test #165: testcorenrn_vecevent::neuron ....................................... Passed 0.32 sec | |
| Start 166: testcorenrn_vecevent::coreneuron_cpu_online | |
| 172/179 Test #166: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 0.65 sec | |
| Start 167: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 173/179 Test #167: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 0.69 sec | |
| Start 168: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 174/179 Test #168: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 0.28 sec | |
| Start 73: parallel::subworld | |
| 175/179 Test #73: parallel::subworld ................................................. Passed 1.24 sec | |
| Start 100: coreneuron_modtests::test_subworlds_py_cpu | |
| 176/179 Test #100: coreneuron_modtests::test_subworlds_py_cpu ......................... Passed 1.93 sec | |
| Start 112: reduced_dentate::compare_results | |
| Start 123: external_ringtest::compare_results | |
| Start 170: testcorenrn_vecevent::compare_results | |
| 177/179 Test #170: testcorenrn_vecevent::compare_results .............................. Passed 0.02 sec | |
| 178/179 Test #112: reduced_dentate::compare_results ................................... Passed 0.02 sec | |
| 179/179 Test #123: external_ringtest::compare_results ................................. Passed 0.02 sec | |
| 100% tests passed, 0 tests failed out of 179 | |
| Total Test time (real) = 106.97 sec | |
| [32;1m$ cmake --build . --target install[0;m | |
| [0/2] Re-checking globbed directories... | |
| [1/5] Update hh.mod for CoreNEURON compatibility | |
| [2/5] cd /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.24.2/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.24.2/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h | |
| fatal: No names found, cannot describe anything. | |
| [3/5] Generating help_data.dat | |
| [4/5] Running utility command for hoc_module | |
| INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib/python build_ext | |
| INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk | |
| WARNING:root:You are building a wheel with a Python built for macOS >=12.0.0. Your wheel won't run on older versions, consider using an official Python build from python.org | |
| WARNING:root:Setting MACOSX_DEPLOYMENT_TARGET=12.0 | |
| INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv'], 'language': 'c++'}) | |
| INFO:root:RX3D is DISABLED | |
| /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:85: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. | |
| dist.fetch_build_eggs(dist.setup_requires) | |
| /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:135: UserWarning: "/Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn" is shallow and may cause errors | |
| warnings.warn(f'"{wd.path}" is shallow and may cause errors') | |
| INFO:root:running build | |
| INFO:root:running build_py | |
| INFO:root:running build_ext | |
| INFO:root:==> Building Python extensions | |
| INFO:root:running build_scripts | |
| [4/5] Install the project... | |
| -- Install configuration: "Custom" | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/bin/nrn-enable-sanitizer | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/bin/mod2c_core | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/mod2c/nrnunits.lib | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/lib/libcoreneuron-core.a | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include//coreneuron | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include//coreneuron/nrniv | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include//coreneuron/nrniv/profiler_interface.h | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include//coreneuron/nrniv/nrniv_decl.h | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include//coreneuron/engine.h | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include//coreneuron/nrnconf.h | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include//coreneuron/gpu | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include//coreneuron/gpu/nrn_acc_manager.hpp | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include//coreneuron/mechanism | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include//coreneuron/mechanism/membfunc.hpp | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include//coreneuron/mechanism/register_mech.hpp | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include//coreneuron/mechanism/mechanism.hpp | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include//coreneuron/mechanism/mech_mapping.hpp | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include//coreneuron/mechanism/eion.hpp | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include//coreneuron/mechanism/mech | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include//coreneuron/mechanism/mech/mod2c_core_thread.hpp | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include//coreneuron/mechanism/mech/cfile | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include//coreneuron/mechanism/mech/cfile/cabvars.h | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include//coreneuron/mpi | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include//coreneuron/mpi/core | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include//coreneuron/mpi/core/nrnmpi.hpp | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include//coreneuron/mpi/nrnmpidec.h | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include//coreneuron/mpi/nrnmpi.h | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include//coreneuron/mpi/lib | |
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| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/mechanism/membfunc.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/mechanism/register_mech.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/mechanism/mechanism.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech_mapping.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/mechanism/eion.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/mod2c_core_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile/cabvars.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/mpi | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/mpi/core | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/mpi/core/nrnmpi.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpidec.h | |
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| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/mpi/lib | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/mpi/lib/nrnmpi.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpiuse.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/config | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/config/config.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/config/version_macros.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/config/neuron_version.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/coreneuron.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/network | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/network/multisend.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/network/have2want.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/network/netpar.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/network/tnode.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/network/netcon.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/network/partrans.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/network/tqueue.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/network/netcvode.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/nrn2core_direct.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/mech_report.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/file_utils.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/core2nrn_data_return.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/prcellstate.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/nrn_setup.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/output_spikes.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/lfp.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/setup_fornetcon.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/nrn_checkpoint.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/user_params.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/nrnsection_mapping.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/nrn_filehandler.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/mem_layout_util.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/phase1.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/reports | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/reports/binary_report_handler.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_event.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_handler.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/reports/sonata_report_handler.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/reports/nrnreport.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/phase2.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/vrecitem.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/utils_cuda.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/nrnmutdec.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/string_utils.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_assert.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/nrnoc_aux.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar/progressbar.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/memory_utils.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/profile | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/profile/profiler_interface.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/lpt.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/offload.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/memory.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/units.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/utils.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/randoms | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/randoms/nrnran123.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_stats.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/ivocvect.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/nrnoc | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md2redef.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md1redef.h | |
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| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/sim | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/sim/multicore.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/sim/fast_imem.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/crout_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/errcodes.h | |
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| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/ssimplic_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/sparse_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/apps | |
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| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/permute | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/permute/node_permute.h | |
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| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/permute/data_layout.hpp | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/nrnassrt.h | |
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| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/shape.cm2 | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/helpdict | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/stdgui.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/loadbal.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/family.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/thresh.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/attshape.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/corenrn.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/gatherv.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/shapebox.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/lincir | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/lincir/lincir1.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/lincir/elmbase.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/lincir/linmech.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/lincir/lingraph.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/lincir.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/grapher.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/vplay.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mknrndll.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/inserter.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/impedanx.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/impratio.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/runfit.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/showmech.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/import3d.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/movierun.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/parcom.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/noload.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/celbild.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/vecwrap.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/prcellstate.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/nrngui.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/funfit.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/wingroup.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/electrod.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild/gategui.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild/properties.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild/chanbild1.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild/kschanbg.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild/const.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild/ksgate.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild/ksstate.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild/kstgui.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild/sigmoid.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild/kstrans.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild/table.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild/exp.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild/linoid.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/celbild | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/celbild/inhomofn.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/celbild/celmemb.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/celbild/celgeom.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/celbild/celbild1.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/celbild/celset.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/celbild/celtopol.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/celbild/celmang.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/celbild/psubset.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mkcurve.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/single.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/netbild.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/pointgrp.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/subiter.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/single1.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/atoltool.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/nrngui1.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/impedanc.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/modlunit.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/netbild | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/netbild/artcel.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/netbild/netgui.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/netbild/netdata.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/netbild/grstrlst.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/netbild/netready.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/netbild/spkplot.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/netbild/syntypes.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/netbild/edgegui.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/varmeth1.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/chanbild.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/secanal.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/ppanal.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/artview.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/ncview.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/rcclasses.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/realcell.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/mviewgui.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/parmsets.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/mviewxml.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/allpp.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/distinct.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/parmvals.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/distinctparm.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/allcell.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/treeview.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview/mview1.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/logax.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/pcchdir.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/stdrun.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit/fitparm.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit/mulfit1.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit/eonefunc.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit/eonerun.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit/clampfit.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit/optwrap.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit/protorun.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit/e_actpot.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit/e_y.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit/eparmlst.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit/e_norm.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit/e_xy.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mulfit/eoneprim.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/macload.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/netparmpi.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/pointbsr.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/binfo.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/stdlib.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/import3d | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/import3d/read_nts.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/import3d/import3d_sec.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/import3d/read_morphml.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/import3d/read_nlcda3.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/import3d/read_nlcda.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/import3d/import3d_gui.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/import3d/read_swc.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/pointman.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/hoc/mview.hoc | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/nrnunits.lib.in | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/prologue.id | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/nrn.defaults.in | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/cleanup | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/shape.cm1 | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/auditscripts | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/auditscripts/saveaudit | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/auditscripts/retrieve.sh | |
| -- Installing: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/lib/auditscripts/hocaudit.sh | |
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| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron | |
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| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/mechanism | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/mechanism/membfunc.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/mechanism/register_mech.hpp | |
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| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech_mapping.hpp | |
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| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/mod2c_core_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile | |
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| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/mpi | |
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| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/network/netcon.hpp | |
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| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/mech_report.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/file_utils.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/core2nrn_data_return.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/prcellstate.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/nrn_setup.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/output_spikes.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/lfp.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/setup_fornetcon.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/nrn_checkpoint.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/user_params.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/nrnsection_mapping.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/nrn_filehandler.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/mem_layout_util.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/phase1.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/reports | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/reports/binary_report_handler.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_event.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_handler.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/reports/sonata_report_handler.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/reports/nrnreport.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/io/phase2.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/vrecitem.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/utils_cuda.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/nrnmutdec.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/string_utils.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_assert.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/nrnoc_aux.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar/progressbar.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/memory_utils.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/profile | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/profile/profiler_interface.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/lpt.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/offload.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/memory.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/units.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/utils.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/randoms | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/randoms/nrnran123.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_stats.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/utils/ivocvect.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/nrnoc | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md2redef.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md1redef.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/membrane_definitions.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/sim | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/sim/multicore.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/sim/fast_imem.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/crout_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/errcodes.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_struct.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/ssimplic_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/sparse_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/apps | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/apps/corenrn_parameters.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/permute | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/permute/node_permute.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/permute/cellorder.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/coreneuron/permute/data_layout.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/nrnassrt.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/spconfig.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/runge.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/nrnoc_ml.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/nrnpy_hoc.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/mech_api.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/mcran4.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/ssimplic_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/hocparse.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/ssimplic.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123 | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/ReinterpretCtr.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/features | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/features/xlcfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/features/pgccfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/features/fujitsufeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/features/metalfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/features/gccfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/features/iccfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/features/open64features.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/features/sunprofeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/features/compilerfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/features/clangfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/features/crayfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/features/sse.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/features/msvcfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/features/openclfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/features/nvccfeatures.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/threefry.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/conventional | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/conventional/Engine.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/conventional/gsl_cbrng.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/philox.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/gsl_microrng.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/aes.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/array.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/MicroURNG.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/u01fixedpt.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/boxmuller.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/uniform.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/Random123/ars.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/sparse_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/treeset.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/include/cspmatrix.h | |
| .: replacing existing signature | |
| .: replacing existing signature | |
| .: replacing existing signature | |
| .: replacing existing signature | |
| .: replacing existing signature | |
| "install" of folder "nrn" of folder "cellular" of folder "hpc" of folder "J608826" of folder "P109632" of folder "0" of folder "builds" of folder "gitlab-runner" of folder "Users" | |
| 35:57: execution error: Finder got an error: AppleEvent timed out. (-1712) | |
| /usr/bin/xcrun | |
| /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/demo/release | |
| cfiles = | |
| Mod files: "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "mcna.mod" "nacaex.mod" "nachan.mod" "release.mod" | |
| Creating 'arm64' directory for .o files. | |
| MODOBJS= ./cabpump.o ./cachan1.o ./camchan.o ./capump.o ./invlfire.o ./khhchan.o ./mcna.o ./nacaex.o ./nachan.o ./release.o | |
| -> [32mCompiling[0m mod_func.cpp | |
| -> [32mNMODL[0m ../cabpump.mod | |
| -> [32mNMODL[0m ../cachan1.mod | |
| -> [32mNMODL[0m ../camchan.mod | |
| Translating cabpump.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/cabpump.cpp | |
| Translating camchan.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/camchan.cpp | |
| Translating cachan1.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/cachan1.cpp | |
| Thread Safe | |
| Thread Safe | |
| Notice: Assignment to the GLOBAL variable, "vol", is not thread safe | |
| -> [32mNMODL[0m ../capump.mod | |
| -> [32mNMODL[0m ../khhchan.mod | |
| -> [32mNMODL[0m ../invlfire.mod | |
| Translating khhchan.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/khhchan.cpp | |
| Translating capump.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/capump.cpp | |
| Translating invlfire.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/invlfire.cpp | |
| Thread Safe | |
| Thread Safe | |
| Thread Safe | |
| -> [32mNMODL[0m ../nachan.mod | |
| -> [32mNMODL[0m ../mcna.mod | |
| -> [32mNMODL[0m ../nacaex.mod | |
| -> [32mNMODL[0m ../release.mod | |
| Translating nachan.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/nachan.cpp | |
| Translating nacaex.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/nacaex.cpp | |
| Translating mcna.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/mcna.cpp | |
| Thread Safe | |
| Thread Safe | |
| Thread Safe | |
| -> [32mCompiling[0m cabpump.cpp | |
| -> [32mCompiling[0m cachan1.cpp | |
| -> [32mCompiling[0m camchan.cpp | |
| Translating release.mod into /Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/release.cpp | |
| Thread Safe | |
| -> [32mCompiling[0m capump.cpp | |
| -> [32mCompiling[0m invlfire.cpp | |
| -> [32mCompiling[0m khhchan.cpp | |
| -> [32mCompiling[0m mcna.cpp | |
| -> [32mCompiling[0m nacaex.cpp | |
| -> [32mCompiling[0m nachan.cpp | |
| -> [32mCompiling[0m release.cpp | |
| => [32mLINKING[0m shared library ./libnrnmech.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => [32mLINKING[0m executable ./special LDFLAGS are: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
| Successfully created arm64/special | |
| NEURON -- VERSION + HEAD (8e38104+) 2023-03-16 | |
| Duke, Yale, and the BlueBrain Project -- Copyright 1984-2022 | |
| See http://neuron.yale.edu/neuron/credits | |
| Additional mechanisms from files | |
| "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "mcna.mod" "nacaex.mod" "nachan.mod" "release.mod" | |
| [32;1m$ export PATH=${INSTALL_DIR}/bin:${PATH}[0;m | |
| [32;1m$ if [[ -f "${INSTALL_DIR}/bin/nrn-enable-sanitizer" ]]; then[0;m | |
| [32;1m$ echo --- bin/nrn-enable-sanitizer ---[0;m | |
| --- bin/nrn-enable-sanitizer --- | |
| [32;1m$ cat bin/nrn-enable-sanitizer[0;m | |
| #!/usr/bin/env bash | |
| prefix="${NRNHOME:-/Users/gitlab-runner/builds/0/P109632/J608826/hpc/cellular/nrn/install}" | |
| export NRN_SANITIZER_PRELOAD_VAR=DYLD_INSERT_LIBRARIES | |
| export NRN_SANITIZER_PRELOAD_VAL=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib | |
| if [[ "$1" == "--preload" ]]; then | |
| shift | |
| if [[ "$1" == "python" ]]; then | |
| # nrn-enable-sanitizer --preload python is used in the CI, but for it to | |
| # work on macOS we need to substitute the real Python binary in place of any | |
| # shims. This is done from CMake, and PYTHON_EXECUTABLE contains the real | |
| # binary. | |
| shift | |
| DYLD_INSERT_LIBRARIES=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib MallocNanoZone=0 ASAN_OPTIONS=check_initialization_order=1:detect_stack_use_after_return=1:detect_leaks=0 /opt/homebrew/Cellar/python@3.10/3.10.8/Frameworks/Python.framework/Versions/3.10/Resources/Python.app/Contents/MacOS/Python "$@" | |
| else | |
| DYLD_INSERT_LIBRARIES=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib MallocNanoZone=0 ASAN_OPTIONS=check_initialization_order=1:detect_stack_use_after_return=1:detect_leaks=0 "$@" | |
| fi | |
| else | |
| MallocNanoZone=0 ASAN_OPTIONS=check_initialization_order=1:detect_stack_use_after_return=1:detect_leaks=0 "$@" | |
| fi | |
| [32;1m$ echo ---[0;m | |
| --- | |
| [32;1m$ nrn_enable_sanitizer=${INSTALL_DIR}/bin/nrn-enable-sanitizer[0;m | |
| [32;1m$ nrn_enable_sanitizer_preload="${nrn_enable_sanitizer} --preload"[0;m | |
| [32;1m$ else[0;m | |
| [32;1m$ if [[ ! "${cmake_args[*]}" =~ "NRN_ENABLE_PYTHON=OFF" ]]; then[0;m | |
| [32;1m$ $PYTHON --version && ${nrn_enable_sanitizer_preload} python -c 'import neuron; neuron.test()'[0;m | |
| Python 3.10.8 | |
| testBytesize (neuron.tests.test_vector.VectorTestCase) | |
| Test that Vector.__array_interface__ returns the proper bytesize (of a double) ... ok | |
| testEndian (neuron.tests.test_vector.VectorTestCase) | |
| Test that Vector.__array_interface__ returns the proper byteorder (endian) ... ok | |
| testNumpyInteraction (neuron.tests.test_vector.VectorTestCase) | |
| Testing numpy.array <=> hoc.Vector interaction ... ok | |
| testPerformance (neuron.tests.test_vector.VectorTestCase) | |
| Test performance of Vector<->list,array ... ok | |
| testABI (neuron.tests.test_neuron.NeuronTestCase) | |
| Test use of some Py_LIMITED_API for python3. ... ok | |
| testExtendedSection (neuron.tests.test_neuron.NeuronTestCase) ... | |
| Executed "l = range(1000000)". Elapsed = 0.000011 s | |
| Executed "v = h.Vector(l)". Elapsed = 0.048711 s | |
| inplace: | |
| Executed "v.from_python(l)". Elapsed = 0.044160 s | |
| Executed "a = numpy.array(v)". Elapsed = 0.003444 s | |
| inplace: | |
| Executed "v.to_python(a)". Elapsed = 0.000877 s | |
| Executed "v2 = h.Vector(a)". Elapsed = 0.003234 s | |
| inplace: | |
| Executed "v2.from_python(a)". Elapsed = 0.000794 s | |
| Executed "l2 = list(v2)". Elapsed = 0.039863 s | |
| inplace: | |
| Executed "v.to_python(l2)". Elapsed = 0.007036 s | |
| Executed "v2 = h.Vector(a[::-1])". Elapsed = 0.003207 s | |
| Executed "a2 = numpy.array(v2)". Elapsed = 0.003449 s | |
| ==28706==ERROR: Interceptors are not working. This may be because AddressSanitizer is loaded too late (e.g. via dlopen). Please launch the executable with: | |
| DYLD_INSERT_LIBRARIES=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib | |
| "interceptors not installed" && 0 | |
| ok | |
| testHClass (neuron.tests.test_neuron.NeuronTestCase) | |
| Test subclass of hoc class. ... ok | |
| testHelp (neuron.tests.test_neuron.NeuronTestCase) ... ok | |
| testIterators (neuron.tests.test_neuron.NeuronTestCase) | |
| Test section, segment, mechanism, rangevar iterators. ... ok | |
| testRxDexistence (neuron.tests.test_neuron.NeuronTestCase) ... ok | |
| testSectionArgOrder (neuron.tests.test_neuron.NeuronTestCase) | |
| First optional arg for Section is name (but name="name" is recommended) ... ok | |
| testSectionCell (neuron.tests.test_neuron.NeuronTestCase) | |
| Section.cell() internally referenced as weakref. ... ok | |
| testSectionListIterator (neuron.tests.test_neuron.NeuronTestCase) | |
| As of v8.0, iteration over a SectionList does not change the cas ... ok | |
| test_newobj_err (neuron.tests.test_neuron.NeuronTestCase) | |
| Test deletion of incompletely constructed objects ... NEURON: generate an error | |
| near line 1 | |
| ob = new NewObj(1, 2) | |
| ^ | |
| NewObj[4].execerror("generate a...") | |
| NewObj[4].init(0, 2) | |
| NewObj[3].init(1, 2) | |
| NewObj[2].execute1("ob = new N...", NewObj[2]) | |
| and others | |
| ok | |
| testpsection (neuron.tests.test_neuron.NeuronTestCase) ... Syntax: | |
| .. code-block:: | |
| python | |
| h.xpanel('name') | |
| h.xpanel('name', [0-1]) | |
| h.xpanel() | |
| h.xpanel(x, y) | |
| h.xpanel(scroll) | |
| h.xpanel(scroll, x, y) | |
| Description: | |
| ``h.xpanel("name")`` | |
| ``h.xpanel("name", [0-1])`` | |
| Title of a new panel. Every | |
| button, menu, and value between this and a closing ``xpanel()`` command | |
| with no arguments (or placement args) belongs to this panel. | |
| If the form is used with a second argument equal to 1, then | |
| the panel is laid out horizontally. Otherwise the default is vertically. | |
| ``h.xpanel()`` | |
| ``h.xpanel(x, y)`` | |
| done constructing the panel. so map it to the screen with position | |
| optionally specified. | |
| ``h.xpanel(scroll)`` | |
| ``h.xpanel(scroll, x, y)`` | |
| as above but if the first arg is a number, then the value determines | |
| whether the panel will be inside a scrollbox. Scroll = 0 means a scrollbox | |
| will NOT be used. Scroll = 1 means the panel will be inside a scrollbox. | |
| Scroll = -1 is the default value and whether or not a scrollbox is used | |
| is determined by the number of panel items in comparison with the | |
| value of the panel_scroll property in the nrn.defaults file. | |
| Skipping because NRN_ENABLE_RX3D=False | |
| #NewObj and #Foo in existence 3 6 | |
| after del a #NewObj and #Foo in existence 0 0 | |
| ==28707==ERROR: Interceptors are not working. This may be because AddressSanitizer is loaded too late (e.g. via dlopen). Please launch the executable with: | |
| DYLD_INSERT_LIBRARIES=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib | |
| "interceptors not installed" && 0 | |
| ok | |
| ---------------------------------------------------------------------- | |
| Ran 15 tests in 1.110s | |
| OK | |
| [32;1m$ fi;[0;m | |
| [32;1m$ ${nrn_enable_sanitizer} neurondemo -nogui -c 'demo(4)' -c 'run()' -c 'quit()'[0;m | |
| NEURON -- VERSION + HEAD (8e38104+) 2023-03-16 | |
| Duke, Yale, and the BlueBrain Project -- Copyright 1984-2022 | |
| See http://neuron.yale.edu/neuron/credits | |
| Additional mechanisms from files | |
| "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "mcna.mod" "nacaex.mod" "nachan.mod" "release.mod" | |
| [32;1m$ if [[ ! "${cmake_args[*]}" =~ "NRN_ENABLE_RX3D=OFF" && ! "${cmake_args[*]}" =~ "NRN_ENABLE_CORENEURON=ON" ]]; then[0;m | |
| section_end:1678982777:step_script [0Ksection_start:1678982777:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-rxd-hoc-spy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=arm64 os[0;m=darwin pid[0;m=28775 revision[0;m=43b2dc3d version[0;m=15.4.0 | |
| ./ccache: found 2388 matching files and directories[0;m | |
| No URL provided, cache will not be uploaded to shared cache server. Cache will be stored only locally.[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1678982779:archive_cache [0Ksection_start:1678982779:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1678982779:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1678982418:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1678982418:resolve_secrets [0Ksection_start:1678982418:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1442616847, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| uid=0(root) gid=0(root) groups=0(root) | |
| root | |
| UID is 0 | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 109632, build ref 8e3810481f2d67cb05a318370fac735509fc5612, job ID 608827 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P109632, optional exclusive flag , optional cpus per task flag --cpus-per-task=6, optional qos flag | |
| CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| uid=0(root) gid=0(root) groups=0(root) | |
| root | |
| UID is 0 | |
| A slurm job will be created with name GL_J608827_PROD_P2160_CP8_C5 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 1318176 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M --job-name=GL_J608827_PROD_P2160_CP8_C5 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P109632 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P109632 --ntasks=1 --jobid=1318176 --cpus-per-task=6 --mem=30750M | |
| section_end:1678982421:prepare_executor [0Ksection_start:1678982421:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i7n31 via bbpv1.epfl.ch... | |
| section_end:1678982426:prepare_script [0Ksection_start:1678982426:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1678982427:get_sources [0Ksection_start:1678982427:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ if [[ -n "${SPACK_ENV_FILE_URL}" && "${PARSE_GITHUB_PR_DESCRIPTIONS,,}" == "true" ]]; then[0;m | |
| [32;1m$ cat > parse_description.py << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ cat parse_description.py[0;m | |
| import os | |
| import re | |
| import requests | |
| pr_info = requests.get("https://api.github.com/repos/{}/pulls/{}".format( | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_TARGET_REPOSITORY'], | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_IID']), | |
| headers={'Accept': 'application/vnd.github.v3+json'}) | |
| pr_body = pr_info.json()["body"] | |
| # match something like NEURON_BRANCH=foo/bar | |
| pat = re.compile('^([A-Z0-9_]+)_([A-Z]+)=([A-Z0-9\-\_\/\+\.]+)$', re.IGNORECASE) | |
| def parse_term(m): | |
| ref_type = m.group(2).lower() | |
| if ref_type not in {'branch', 'tag', 'ref'}: return | |
| print(m.group(1).upper() + '_' + ref_type.upper() + '=' + m.group(3)) | |
| if pr_body is not None: | |
| for pr_body_line in pr_body.splitlines(): | |
| if not pr_body_line.startswith('CI_BRANCHES:'): continue | |
| for config_term in pr_body_line[12:].split(','): | |
| pat.sub(parse_term, config_term) | |
| [32;1m$ (module load unstable python-dev; python parse_description.py) > input_variables.env[0;m | |
| Autoloading python/3.10.8 | |
| Autoloading intel-oneapi-mkl/2021.4.0 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ else[0;m | |
| [32;1m$ cat input_variables.env[0;m | |
| [32;1m$ for var_to_unset in $(sed 's/^\(.*\?\)_\(BRANCH\|COMMIT\|TAG\)=.*$/\1_BRANCH\n\1_COMMIT\n\1_TAG/' input_variables.env); do # collapsed multi-line command[0;m | |
| [32;1m$ set -o allexport[0;m | |
| [32;1m$ . input_variables.env[0;m | |
| [32;1m$ set +o allexport[0;m | |
| [32;1m$ unset MODULEPATH[0;m | |
| [32;1m$ . /gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config/modules.sh[0;m | |
| [32;1m$ echo "MODULEPATH=${MODULEPATH}" > spack_clone_variables.env[0;m | |
| [32;1m$ echo Preparing to clone Spack into ${PWD}[0;m | |
| Preparing to clone Spack into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608827 | |
| [32;1m$ if [[ -z "${SPACK_BRANCH}" && ( -n "${SPACK_COMMIT}" || -n "${SPACK_TAG}" ) ]]; then[0;m | |
| [32;1m$ echo Checking out the ${SPACK_BRANCH} of Spack...[0;m | |
| Checking out the develop of Spack... | |
| [32;1m$ module load unstable git[0;m | |
| [32;1m$ git clone -c feature.manyFiles=true --depth 1 --single-branch --branch ${SPACK_BRANCH} ${SPACK_URL} spack[0;m | |
| Cloning into 'spack'... | |
| Updating files: 2% (238/10327) Updating files: 3% (310/10327) Updating files: 4% (414/10327) Updating files: 4% (467/10327) Updating files: 5% (517/10327) Updating files: 6% (620/10327) Updating files: 7% (723/10327) Updating files: 7% (749/10327) Updating files: 8% (827/10327) Updating files: 9% (930/10327) Updating files: 10% (1033/10327) Updating files: 10% (1077/10327) Updating files: 11% (1136/10327) Updating files: 12% (1240/10327) Updating files: 12% (1241/10327) Updating files: 13% (1343/10327) Updating files: 14% (1446/10327) Updating files: 14% (1494/10327) Updating files: 15% (1550/10327) Updating files: 15% (1626/10327) Updating files: 16% (1653/10327) Updating files: 17% (1756/10327) Updating files: 17% (1767/10327) Updating files: 18% (1859/10327) Updating files: 18% (1922/10327) Updating files: 19% (1963/10327) Updating files: 20% (2066/10327) Updating files: 20% (2068/10327) Updating files: 21% (2169/10327) Updating files: 21% (2248/10327) Updating files: 22% 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| [32;1m$ export SPACK_ROOT=${PWD}/spack[0;m | |
| [32;1m$ export SPACK_USER_CACHE_PATH="${CI_BUILDS_DIR}"[0;m | |
| [32;1m$ export SPACK_SYSTEM_CONFIG_PATH="/gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config"[0;m | |
| [32;1m$ echo "SPACK_ROOT=${SPACK_ROOT}" >> spack_clone_variables.env[0;m | |
| [32;1m$ echo "SPACK_USER_CACHE_PATH=${SPACK_USER_CACHE_PATH}" >> spack_clone_variables.env[0;m | |
| [32;1m$ echo "SPACK_SYSTEM_CONFIG_PATH=${SPACK_SYSTEM_CONFIG_PATH}" >> spack_clone_variables.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P109632/J608827_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ env -0 | sed -nz '/^CUSTOM_ENV_/d;/^[^=]\+_\(BRANCH\|COMMIT\|TAG\)=.\+/p' | xargs -0t spack configure-pipeline --ignore-packages CI_BUILD CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK ${SPACK_SETUP_IGNORE_PACKAGE_VARIABLES} --write-commit-file=commit-mapping.env[0;m | |
| spack configure-pipeline --ignore-packages CI_BUILD CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK BLUECONFIGS --write-commit-file=commit-mapping.env CI_COMMIT_BRANCH=rxd-hoc-spy GITLAB_PIPELINES_BRANCH=main NEURON_COMMIT=8e3810481f2d67cb05a318370fac735509fc5612 REPORTINGLIB_BRANCH=master NMODL_BRANCH=master LIBSONATA_REPORT_BRANCH=master SPACK_BRANCH=develop CI_DEFAULT_BRANCH=master BLUECONFIGS_BRANCH=main | |
| ==> CI_COMMIT: ignoring CI_COMMIT_BRANCH=rxd-hoc-spy | |
| ==> GITLAB_PIPELINES: ignoring GITLAB_PIPELINES_BRANCH=main | |
| ==> SPACK: ignoring SPACK_BRANCH=develop | |
| ==> CI_DEFAULT: ignoring CI_DEFAULT_BRANCH=master | |
| ==> BLUECONFIGS: ignoring BLUECONFIGS_BRANCH=main | |
| ==> reportinglib: resolved branch master to d7307c7aecdec51e96f870054f23290c848d3372 | |
| ==> nmodl: resolved branch master to b2d5dfe80ea4e04d7c6f6f7e7cc126dfdcbdf9fe | |
| ==> libsonata-report: resolved branch master to b767078972c375408faee8f348b794039a994493 | |
| ==> neuron@develop: remove branch/commit/tag | |
| ==> neuron@develop: use commit="8e3810481f2d67cb05a318370fac735509fc5612" | |
| ==> neuron@develop: add preferred=True | |
| ==> reportinglib@develop: remove branch/commit/tag | |
| ==> reportinglib@develop: use commit="d7307c7aecdec51e96f870054f23290c848d3372" | |
| ==> reportinglib@develop: add preferred=True | |
| ==> nmodl@develop: remove branch/commit/tag | |
| ==> nmodl@develop: use commit="b2d5dfe80ea4e04d7c6f6f7e7cc126dfdcbdf9fe" | |
| ==> nmodl@develop: add preferred=True | |
| ==> libsonata-report@develop: remove branch/commit/tag | |
| ==> libsonata-report@develop: use commit="b767078972c375408faee8f348b794039a994493" | |
| ==> libsonata-report@develop: add preferred=True | |
| [32;1m$ (cd "${SPACK_ROOT}" && git diff)[0;m | |
| diff --git a/bluebrain/repo-bluebrain/packages/libsonata-report/package.py b/bluebrain/repo-bluebrain/packages/libsonata-report/package.py | |
| index 628bae02..78be468c 100644 | |
| --- a/bluebrain/repo-bluebrain/packages/libsonata-report/package.py | |
| +++ b/bluebrain/repo-bluebrain/packages/libsonata-report/package.py | |
| @@ -17,7 +17,7 @@ class LibsonataReport(CMakePackage): | |
| homepage = "https://github.com/BlueBrain/libsonatareport" | |
| git = "https://github.com/BlueBrain/libsonatareport.git" | |
| - version("develop", branch="master", submodules=False, get_full_repo=True) | |
| + version('develop', preferred=True, commit='b767078972c375408faee8f348b794039a994493', submodules=False, get_full_repo=True) # old: branch="master" | |
| version("1.1.1", tag="1.1.1", submodules=False) | |
| version("1.1", tag="1.1", submodules=False) | |
| version("1.0.0.20220218", commit="905641", submodules=False) | |
| diff --git a/bluebrain/repo-bluebrain/packages/nmodl/package.py b/bluebrain/repo-bluebrain/packages/nmodl/package.py | |
| index 68fcf3ba..28279fec 100644 | |
| --- a/bluebrain/repo-bluebrain/packages/nmodl/package.py | |
| +++ b/bluebrain/repo-bluebrain/packages/nmodl/package.py | |
| @@ -13,7 +13,7 @@ class Nmodl(CMakePackage): | |
| url = "https://github.com/BlueBrain/nmodl.git" | |
| git = "https://github.com/BlueBrain/nmodl.git" | |
| - version("develop", branch="master", submodules=True) | |
| + version('develop', preferred=True, commit='b2d5dfe80ea4e04d7c6f6f7e7cc126dfdcbdf9fe', submodules=True) # old: branch="master" | |
| version("llvm", branch="llvm", submodules=True) | |
| version("0.5.c", commit="c3b0736") | |
| version("0.5.b", commit="243453d") | |
| diff --git a/bluebrain/repo-bluebrain/packages/reportinglib/package.py b/bluebrain/repo-bluebrain/packages/reportinglib/package.py | |
| index b4de456b..61632514 100644 | |
| --- a/bluebrain/repo-bluebrain/packages/reportinglib/package.py | |
| +++ b/bluebrain/repo-bluebrain/packages/reportinglib/package.py | |
| @@ -16,7 +16,7 @@ class Reportinglib(CMakePackage): | |
| homepage = "https://bbpgitlab.epfl.ch/hpc/reportinglib" | |
| git = "ssh://git@bbpgitlab.epfl.ch/hpc/reportinglib.git" | |
| - version("develop", branch="master") | |
| + version('develop', preferred=True, commit='d7307c7aecdec51e96f870054f23290c848d3372') # old: branch="master" | |
| version("2.5.6", tag="2.5.6") | |
| version("2.5.5", tag="2.5.5") | |
| version("2.5.4", tag="2.5.4") | |
| diff --git a/bluebrain/repo-patches/packages/neuron/package.py b/bluebrain/repo-patches/packages/neuron/package.py | |
| index 8b31b8b5..dc447577 100644 | |
| --- a/bluebrain/repo-patches/packages/neuron/package.py | |
| +++ b/bluebrain/repo-patches/packages/neuron/package.py | |
| @@ -30,7 +30,7 @@ class Neuron(CMakePackage): | |
| # Patch for recent CMake versions that don't identify NVHPC as PGI | |
| patch("patch-v800-cmake-nvhpc.patch", when="@8.0.0%nvhpc^cmake@3.20:") | |
| - version("develop", branch="master") | |
| + version('develop', preferred=True, commit='8e3810481f2d67cb05a318370fac735509fc5612') # old: branch="master" | |
| version("9.0.a5", commit="522c866") | |
| version("9.0.a4", commit="de2c927") | |
| version("9.0.a3", commit="afce1ef") | |
| [32;1m$ cat commit-mapping.env[0;m | |
| NEURON_COMMIT=8e3810481f2d67cb05a318370fac735509fc5612 | |
| REPORTINGLIB_COMMIT=d7307c7aecdec51e96f870054f23290c848d3372 | |
| NMODL_COMMIT=b2d5dfe80ea4e04d7c6f6f7e7cc126dfdcbdf9fe | |
| LIBSONATA_REPORT_COMMIT=b767078972c375408faee8f348b794039a994493 | |
| [32;1m$ echo "SPACK_BRANCH=${SPACK_BRANCH}" >> commit-mapping.env[0;m | |
| [32;1m$ echo "SPACK_DEPLOYMENT_SUFFIX=${SPACK_DEPLOYMENT_SUFFIX}" >> commit-mapping.env[0;m | |
| [32;1m$ cat commit-mapping.env >> spack_clone_variables.env[0;m | |
| [32;1m$ spack spec -IL ninja[0;m | |
| ==> Warning: Expected user 904556 to own /nvme/bbpcihpcproj12, but it is owned by 0 | |
| ==> Bootstrapping clingo from pre-built binaries | |
| ==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.4/build_cache/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-prqkzynv2nwko5mktitebgkeumuxkveu.spec.json | |
| ==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.4/build_cache/linux-centos7-x86_64/gcc-10.2.1/clingo-bootstrap-spack/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-prqkzynv2nwko5mktitebgkeumuxkveu.spack | |
| ==> Installing "clingo-bootstrap@spack%gcc@10.2.1~docs~ipo+python+static_libstdcpp build_type=Release arch=linux-centos7-x86_64" from a buildcache | |
| Input spec | |
| -------------------------------- | |
| - ninja | |
| Concretized | |
| -------------------------------- | |
| [^] zk4skoxmkt7do2mk5lgnesas7ol3hhgg ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [32;1m$ echo "SPACK_SETUP_COMMIT_MAPPING_URL=${CI_API_V4_URL}/projects/${CI_PROJECT_ID}/jobs/${CI_JOB_ID}/artifacts/commit-mapping.env" >> spack_clone_variables.env[0;m | |
| [32;1m$ spack config --scope site add "config:ccache:true"[0;m | |
| [32;1m$ echo "SPACK_USE_CCACHE=true" >> spack_clone_variables.env[0;m | |
| [32;1m$ echo "BLUECONFIGS_BRANCH=${BLUECONFIGS_BRANCH}" >> commit-mapping.env[0;m | |
| [32;1m$ echo "BLUECONFIGS_BRANCH=${BLUECONFIGS_BRANCH}" >> spack_clone_variables.env[0;m | |
| section_end:1678982852:step_script [0Ksection_start:1678982852:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=120490 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| commit-mapping.env: found 1 matching files and directories[0;m | |
| input_variables.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=608827 responseStatus[0;m=201 Created token[0;m=64_EbKAH | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=120513 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=608827 responseStatus[0;m=201 Created token[0;m=64_EbKAH | |
| section_end:1678982854:upload_artifacts_on_success [0Ksection_start:1678982854:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1678982855:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1678984884:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1678984884:resolve_secrets [0Ksection_start:1678984884:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor214355786, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| uid=0(root) gid=0(root) groups=0(root) | |
| root | |
| UID is 0 | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 109632, build ref 8e3810481f2d67cb05a318370fac735509fc5612, job ID 608839 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P109632, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| uid=0(root) gid=0(root) groups=0(root) | |
| root | |
| UID is 0 | |
| A slurm job will be created with name GL_J608839_PROD_P2160_CP4_C3 | |
| Job parameters: memory=76G, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 1318556 | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=76G --job-name=GL_J608839_PROD_P2160_CP4_C3 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P109632 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P109632 --ntasks=16 --jobid=1318556 --cpus-per-task=1 --mem=76G | |
| section_end:1678984897:prepare_executor [0Ksection_start:1678984897:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i7n29 via bbpv1.epfl.ch... | |
| section_end:1678984902:prepare_script [0Ksection_start:1678984902:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1678984904:get_sources [0Ksection_start:1678984904:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:neuron:nmodl:intel:legacy (608831)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=265008 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=608831 responseStatus[0;m=200 OK token[0;m=64_JT31_ | |
| section_end:1678984907:download_artifacts [0Ksection_start:1678984907:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --no-tests=error --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i5n18 | |
| Build name: Linux-icpc | |
| Create new tag: 20230316-1643 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P109632/J608831/spack-build/spack-stage-neuron-develop-x374lngkobtm7rqcn5yjvsysjshhjzmq/spack-build-x374lng | |
| Start 112: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 119: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 125: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| Start 131: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| Start 137: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| Start 143: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| Start 148: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| Start 154: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| Start 160: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 1/184 Test #125: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 4.74 sec | |
| Start 106: external_ringtest::neuron | |
| 2/184 Test #119: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 5.20 sec | |
| Start 115: testcorenrn_bbcore::neuron | |
| 3/184 Test #131: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 5.22 sec | |
| Start 116: testcorenrn_bbcore::coreneuron_cpu_online | |
| 4/184 Test #143: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 5.24 sec | |
| Start 117: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 5/184 Test #137: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 5.54 sec | |
| Start 166: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 6/184 Test #154: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 5.66 sec | |
| Start 107: external_ringtest::neuron_mpi | |
| 7/184 Test #148: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 5.73 sec | |
| Start 108: external_ringtest::neuron_mpi_python | |
| 8/184 Test #160: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 6.17 sec | |
| Start 181: olfactory-bulb-3d::neuron::preparation | |
| 9/184 Test #181: olfactory-bulb-3d::neuron::preparation ............................. Passed 0.16 sec | |
| Start 183: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| 10/184 Test #183: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............. Passed 0.17 sec | |
| Start 103: reduced_dentate::neuron | |
| 11/184 Test #112: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 7.36 sec | |
| Start 109: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
| 12/184 Test #106: external_ringtest::neuron .......................................... Passed 4.35 sec | |
| Start 118: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 13/184 Test #115: testcorenrn_bbcore::neuron ......................................... Passed 4.58 sec | |
| Start 121: testcorenrn_conc::neuron | |
| 14/184 Test #166: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 5.40 sec | |
| Start 110: external_ringtest::coreneuron_cpu_mpi | |
| 15/184 Test #116: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 6.71 sec | |
| Start 122: testcorenrn_conc::coreneuron_cpu_online | |
| 16/184 Test #118: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 2.90 sec | |
| Start 123: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 17/184 Test #117: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 6.84 sec | |
| Start 124: testcorenrn_conc::coreneuron_cpu_offline | |
| 18/184 Test #108: external_ringtest::neuron_mpi_python ............................... Passed 7.25 sec | |
| Start 111: external_ringtest::coreneuron_cpu_mpi_offline | |
| 19/184 Test #107: external_ringtest::neuron_mpi ...................................... Passed 7.67 sec | |
| Start 127: testcorenrn_deriv::neuron | |
| Start 128: testcorenrn_deriv::coreneuron_cpu_online | |
| 20/184 Test #121: testcorenrn_conc::neuron ........................................... Passed 4.05 sec | |
| Start 129: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 21/184 Test #124: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 2.56 sec | |
| Start 130: testcorenrn_deriv::coreneuron_cpu_offline | |
| 22/184 Test #111: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 3.31 sec | |
| Start 133: testcorenrn_gf::neuron | |
| 23/184 Test #130: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 2.64 sec | |
| Start 139: testcorenrn_kin::neuron | |
| 24/184 Test #110: external_ringtest::coreneuron_cpu_mpi .............................. Passed 6.44 sec | |
| Start 134: testcorenrn_gf::coreneuron_cpu_online | |
| 25/184 Test #127: testcorenrn_deriv::neuron .......................................... Passed 4.25 sec | |
| Start 140: testcorenrn_kin::coreneuron_cpu_online | |
| 26/184 Test #123: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 5.66 sec | |
| Start 141: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 27/184 Test #122: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 5.78 sec | |
| Start 142: testcorenrn_kin::coreneuron_cpu_offline | |
| 28/184 Test #103: reduced_dentate::neuron ............................................ Passed 11.46 sec | |
| Start 104: reduced_dentate::coreneuron_cpu | |
| 29/184 Test #128: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 5.53 sec | |
| Start 172: channel_benchmark_hippo::neuron | |
| 30/184 Test #129: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 5.77 sec | |
| Start 173: channel_benchmark_hippo::coreneuron_cpu_online | |
| 31/184 Test #142: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 2.87 sec | |
| Start 174: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 32/184 Test #133: testcorenrn_gf::neuron ............................................. Passed 4.79 sec | |
| Start 135: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 33/184 Test #139: testcorenrn_kin::neuron ............................................ Passed 4.45 sec | |
| Start 176: channel_benchmark_sscx::neuron | |
| 34/184 Test #109: external_ringtest::coreneuron_cpu_mpi_offline_saverestore .......... Passed 16.43 sec | |
| Start 136: testcorenrn_gf::coreneuron_cpu_offline | |
| 35/184 Test #140: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 6.21 sec | |
| Start 177: channel_benchmark_sscx::coreneuron_cpu_online | |
| 36/184 Test #141: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 6.21 sec | |
| Start 178: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 37/184 Test #134: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 6.94 sec | |
| Start 145: testcorenrn_patstim::neuron | |
| 38/184 Test #136: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 3.01 sec | |
| Start 146: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
| 39/184 Test #135: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 5.74 sec | |
| Start 147: testcorenrn_patstim::coreneuron_cpu_offline | |
| 40/184 Test #145: testcorenrn_patstim::neuron ........................................ Passed 4.43 sec | |
| Start 150: testcorenrn_vecplay::neuron | |
| 41/184 Test #147: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 3.25 sec | |
| Start 151: testcorenrn_vecplay::coreneuron_cpu_online | |
| 42/184 Test #104: reduced_dentate::coreneuron_cpu .................................... Passed 14.82 sec | |
| Start 152: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| Start 153: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 43/184 Test #150: testcorenrn_vecplay::neuron ........................................ Passed 4.76 sec | |
| Start 162: testcorenrn_watch::neuron | |
| 44/184 Test #151: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 5.39 sec | |
| Start 163: testcorenrn_watch::coreneuron_cpu_online | |
| 45/184 Test #153: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 2.75 sec | |
| Start 164: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 46/184 Test #146: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............ Passed 10.84 sec | |
| Start 165: testcorenrn_watch::coreneuron_cpu_offline | |
| 47/184 Test #162: testcorenrn_watch::neuron .......................................... Passed 4.13 sec | |
| Start 168: testcorenrn_netstimdirect::direct_netstimdirect | |
| 48/184 Test #152: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 5.23 sec | |
| Start 169: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 49/184 Test #165: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 3.16 sec | |
| Start 1: unit_tests::testneuron | |
| Start 2: ringtest | |
| 50/184 Test #163: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 5.54 sec | |
| Start 3: connect_dend | |
| Start 4: mpi_init::nrniv_mpiopt | |
| 51/184 Test #164: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 5.54 sec | |
| Start 5: mpi_init::nrniv_nrnmpi_init | |
| Start 6: mpi_init::python_nrnmpi_init | |
| 52/184 Test #1: unit_tests::testneuron ............................................. Passed 0.80 sec | |
| Start 7: mpi_init::python_mpienv | |
| 53/184 Test #5: mpi_init::nrniv_nrnmpi_init ........................................ Passed 0.76 sec | |
| Start 8: mpi_init::nrniv_mpiexec_mpiopt | |
| 54/184 Test #4: mpi_init::nrniv_mpiopt ............................................. Passed 0.92 sec | |
| Start 9: mpi_init::nrniv_mpiexec_nrnmpi_init | |
| 55/184 Test #2: ringtest ........................................................... Passed 1.61 sec | |
| Start 10: mpi_init::python_mpiexec_nrnmpi_init | |
| 56/184 Test #3: connect_dend ....................................................... Passed 1.44 sec | |
| Start 11: mpi_init::python_mpiexec_mpienv | |
| 57/184 Test #6: mpi_init::python_nrnmpi_init ....................................... Passed 2.29 sec | |
| Start 12: pynrn::basic_tests | |
| 58/184 Test #168: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 5.93 sec | |
| Start 13: coverage_tests::cover_tests | |
| Start 14: example_nmodl::ca_ap_hoc | |
| 59/184 Test #169: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 5.74 sec | |
| Start 15: example_nmodl::cabpump_hoc | |
| Start 16: example_nmodl::cachan_hoc | |
| 60/184 Test #7: mpi_init::python_mpienv ............................................ Passed 2.66 sec | |
| Start 17: example_nmodl::cadif_hoc | |
| 61/184 Test #14: example_nmodl::ca_ap_hoc ........................................... Passed 0.84 sec | |
| Start 18: example_nmodl::cadifusl_hoc | |
| 62/184 Test #8: mpi_init::nrniv_mpiexec_mpiopt ..................................... Passed 2.79 sec | |
| Start 19: example_nmodl::cadifusl1_hoc | |
| 63/184 Test #16: example_nmodl::cachan_hoc .......................................... Passed 0.87 sec | |
| Start 20: example_nmodl::cadifusl2_hoc | |
| 64/184 Test #9: mpi_init::nrniv_mpiexec_nrnmpi_init ................................ Passed 3.01 sec | |
| Start 21: example_nmodl::cagk_hoc | |
| 65/184 Test #15: example_nmodl::cabpump_hoc ......................................... Passed 1.44 sec | |
| Start 22: example_nmodl::capmp_hoc | |
| 66/184 Test #18: example_nmodl::cadifusl_hoc ........................................ Passed 0.94 sec | |
| Start 23: example_nmodl::cv_hoc | |
| 67/184 Test #19: example_nmodl::cadifusl1_hoc ....................................... Passed 0.90 sec | |
| Start 24: example_nmodl::fh_hoc | |
| 68/184 Test #20: example_nmodl::cadifusl2_hoc ....................................... Passed 0.98 sec | |
| Start 25: example_nmodl::fit1_hoc | |
| 69/184 Test #21: example_nmodl::cagk_hoc ............................................ Passed 0.84 sec | |
| Start 26: example_nmodl::gap_hoc | |
| 70/184 Test #17: example_nmodl::cadif_hoc ........................................... Passed 1.66 sec | |
| Start 27: example_nmodl::hh1_hoc | |
| 71/184 Test #22: example_nmodl::capmp_hoc ........................................... Passed 0.85 sec | |
| Start 28: example_nmodl::hhvect_hoc | |
| 72/184 Test #23: example_nmodl::cv_hoc .............................................. Passed 0.93 sec | |
| Start 29: example_nmodl::nacum_hoc | |
| 73/184 Test #24: example_nmodl::fh_hoc .............................................. Passed 0.86 sec | |
| Start 30: example_nmodl::nadifl1_hoc | |
| 74/184 Test #25: example_nmodl::fit1_hoc ............................................ Passed 0.94 sec | |
| Start 31: example_nmodl::nadifl2_hoc | |
| 75/184 Test #26: example_nmodl::gap_hoc ............................................. Passed 0.88 sec | |
| Start 32: example_nmodl::nadifl3_hoc | |
| 76/184 Test #27: example_nmodl::hh1_hoc ............................................. Passed 0.90 sec | |
| Start 33: example_nmodl::nadifl4_hoc | |
| 77/184 Test #28: example_nmodl::hhvect_hoc .......................................... Passed 0.84 sec | |
| Start 34: example_nmodl::obj_ex_hoc | |
| 78/184 Test #29: example_nmodl::nacum_hoc ........................................... Passed 0.93 sec | |
| Start 35: example_nmodl::order_hoc | |
| 79/184 Test #11: mpi_init::python_mpiexec_mpienv .................................... Passed 4.81 sec | |
| Start 36: example_nmodl::passiv_hoc | |
| 80/184 Test #30: example_nmodl::nadifl1_hoc ......................................... Passed 1.00 sec | |
| Start 37: example_nmodl::stim1_hoc | |
| 81/184 Test #10: mpi_init::python_mpiexec_nrnmpi_init ............................... Passed 5.20 sec | |
| Start 38: example_nmodl::syn1_hoc | |
| 82/184 Test #34: example_nmodl::obj_ex_hoc .......................................... Passed 1.26 sec | |
| Start 39: example_nmodl::synpre_hoc | |
| 83/184 Test #31: example_nmodl::nadifl2_hoc ......................................... Passed 1.78 sec | |
| Start 40: example_nmodl::tstextrn_hoc | |
| 84/184 Test #36: example_nmodl::passiv_hoc .......................................... Passed 1.26 sec | |
| Start 41: example_nmodl::tstpnt1_hoc | |
| 85/184 Test #176: channel_benchmark_sscx::neuron ..................................... Passed 26.83 sec | |
| Start 42: example_nmodl::tstpnt2_hoc | |
| 86/184 Test #173: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 29.08 sec | |
| Start 43: example_nmodl::tstvec_hoc | |
| 87/184 Test #172: channel_benchmark_hippo::neuron .................................... Passed 29.80 sec | |
| Start 44: example_nmodl::cagkftab_py | |
| 88/184 Test #32: example_nmodl::nadifl3_hoc ......................................... Passed 1.99 sec | |
| Start 45: example_nmodl::expsynspine_py | |
| 89/184 Test #37: example_nmodl::stim1_hoc ........................................... Passed 1.26 sec | |
| Start 46: example_nmodl::nonlin_py | |
| 90/184 Test #38: example_nmodl::syn1_hoc ............................................ Passed 1.30 sec | |
| Start 47: example_nmodl::tstpnt1_py | |
| 91/184 Test #33: example_nmodl::nadifl4_hoc ......................................... Passed 2.09 sec | |
| Start 48: example_nmodl::tstpnt2_py | |
| 92/184 Test #35: example_nmodl::order_hoc ........................................... Passed 2.04 sec | |
| Start 49: example_nmodl::vlag_py | |
| 93/184 Test #39: example_nmodl::synpre_hoc .......................................... Passed 1.35 sec | |
| Start 50: hoctests::perf1_hoc | |
| 94/184 Test #174: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 29.03 sec | |
| Start 51: hoctests::test1_hoc | |
| 95/184 Test #40: example_nmodl::tstextrn_hoc ........................................ Passed 1.41 sec | |
| Start 52: hoctests::test2_hoc | |
| 96/184 Test #41: example_nmodl::tstpnt1_hoc ......................................... Passed 1.47 sec | |
| Start 53: hoctests::test3_hoc | |
| 97/184 Test #42: example_nmodl::tstpnt2_hoc ......................................... Passed 1.46 sec | |
| Start 54: hoctests::test4_hoc | |
| 98/184 Test #43: example_nmodl::tstvec_hoc .......................................... Passed 1.47 sec | |
| Start 55: hoctests::test5_hoc | |
| 99/184 Test #178: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 26.77 sec | |
| Start 56: hoctests::test6_hoc | |
| 100/184 Test #177: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 27.01 sec | |
| Start 57: hoctests::test7_hoc | |
| 101/184 Test #51: hoctests::test1_hoc ................................................ Passed 1.48 sec | |
| Start 58: hoctests::test8_hoc | |
| 102/184 Test #50: hoctests::perf1_hoc ................................................ Passed 1.71 sec | |
| Start 59: hoctests::test9_hoc | |
| 103/184 Test #52: hoctests::test2_hoc ................................................ Passed 1.58 sec | |
| Start 60: hoctests::test_kschan_py | |
| 104/184 Test #53: hoctests::test3_hoc ................................................ Passed 1.49 sec | |
| Start 61: hoctests::test_neurondemo_py | |
| 105/184 Test #54: hoctests::test4_hoc ................................................ Passed 1.48 sec | |
| Start 62: hoctests::test_nrniv-launch_py | |
| 106/184 Test #55: hoctests::test5_hoc ................................................ Passed 1.52 sec | |
| Start 63: hoctests::test_shape_py | |
| 107/184 Test #56: hoctests::test6_hoc ................................................ Passed 1.59 sec | |
| Start 64: hoctests::test1_py | |
| 108/184 Test #57: hoctests::test7_hoc ................................................ Passed 1.63 sec | |
| Start 65: hoctests::test2_py | |
| 109/184 Test #58: hoctests::test8_hoc ................................................ Passed 1.57 sec | |
| Start 66: hoctests::test9_py | |
| 110/184 Test #48: example_nmodl::tstpnt2_py .......................................... Passed 3.92 sec | |
| Start 71: nmodl_tests::test_table | |
| 111/184 Test #59: hoctests::test9_hoc ................................................ Passed 1.61 sec | |
| Start 72: nmodl_tests::test_disc | |
| 112/184 Test #47: example_nmodl::tstpnt1_py .......................................... Passed 3.98 sec | |
| Start 73: nmodl_tests::test_function_table | |
| 113/184 Test #45: example_nmodl::expsynspine_py ...................................... Passed 4.26 sec | |
| Start 74: nmodl_tests::test_kinetic | |
| 114/184 Test #46: example_nmodl::nonlin_py ........................................... Passed 4.26 sec | |
| Start 75: coreneuron_modtests::version_macros | |
| 115/184 Test #49: example_nmodl::vlag_py ............................................. Passed 4.10 sec | |
| Start 76: coreneuron_modtests::fornetcon_py_cpu | |
| 116/184 Test #44: example_nmodl::cagkftab_py ......................................... Passed 5.39 sec | |
| Start 77: coreneuron_modtests::direct_py_cpu | |
| 117/184 Test #62: hoctests::test_nrniv-launch_py ..................................... Passed 2.78 sec | |
| Start 78: coreneuron_modtests::direct_hoc_cpu | |
| 118/184 Test #61: hoctests::test_neurondemo_py ....................................... Passed 4.03 sec | |
| Start 79: coreneuron_modtests::spikes_py_cpu | |
| 119/184 Test #60: hoctests::test_kschan_py ........................................... Passed 4.30 sec | |
| Start 80: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 120/184 Test #63: hoctests::test_shape_py ............................................ Passed 4.25 sec | |
| Start 81: coreneuron_modtests::fast_imem_py_cpu | |
| 121/184 Test #64: hoctests::test1_py ................................................. Passed 3.98 sec | |
| Start 82: coreneuron_modtests::datareturn_py_cpu | |
| 122/184 Test #65: hoctests::test2_py ................................................. Passed 3.99 sec | |
| Start 83: coreneuron_modtests::test_units_py_cpu | |
| 123/184 Test #66: hoctests::test9_py ................................................. Passed 4.04 sec | |
| Start 84: coreneuron_modtests::test_netmove_py_cpu | |
| 124/184 Test #75: coreneuron_modtests::version_macros ................................ Passed 5.14 sec | |
| Start 85: coreneuron_modtests::test_pointer_py_cpu | |
| 125/184 Test #71: nmodl_tests::test_table ............................................ Passed 5.40 sec | |
| Start 86: coreneuron_modtests::test_watchrange_py_cpu | |
| 126/184 Test #72: nmodl_tests::test_disc ............................................. Passed 5.37 sec | |
| Start 87: coreneuron_modtests::test_psolve_py_cpu | |
| 127/184 Test #74: nmodl_tests::test_kinetic .......................................... Passed 5.32 sec | |
| Start 88: coreneuron_modtests::test_ba_py_cpu | |
| 128/184 Test #73: nmodl_tests::test_function_table ................................... Passed 5.44 sec | |
| Start 89: coreneuron_modtests::test_natrans_py_cpu | |
| 129/184 Test #76: coreneuron_modtests::fornetcon_py_cpu .............................. Passed 5.25 sec | |
| Start 94: nmodl_tests_coreneuron::test_table_coreneuron_cpu | |
| 130/184 Test #78: coreneuron_modtests::direct_hoc_cpu ................................ Passed 5.06 sec | |
| Start 95: nmodl_tests_coreneuron::test_disc_coreneuron_cpu | |
| 131/184 Test #77: coreneuron_modtests::direct_py_cpu ................................. Passed 5.54 sec | |
| Start 96: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu | |
| 132/184 Test #13: coverage_tests::cover_tests ........................................ Passed 16.08 sec | |
| Start 97: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu | |
| 133/184 Test #79: coreneuron_modtests::spikes_py_cpu ................................. Passed 5.46 sec | |
| Start 98: modlunit_unitstest | |
| 134/184 Test #80: coreneuron_modtests::spikes_file_mode_py_cpu ....................... Passed 5.52 sec | |
| Start 99: modlunit_hh | |
| 135/184 Test #98: modlunit_unitstest ................................................. Passed 0.34 sec | |
| Start 100: modlunit_stim | |
| 136/184 Test #81: coreneuron_modtests::fast_imem_py_cpu .............................. Passed 5.54 sec | |
| Start 101: modlunit_pattern | |
| 137/184 Test #99: modlunit_hh ........................................................ Passed 0.36 sec | |
| Start 102: external_nrntest | |
| 138/184 Test #83: coreneuron_modtests::test_units_py_cpu ............................. Passed 5.13 sec | |
| Start 105: reduced_dentate::compare_results | |
| 139/184 Test #100: modlunit_stim ...................................................... Passed 0.34 sec | |
| Start 120: testcorenrn_bbcore::compare_results | |
| 140/184 Test #101: modlunit_pattern ................................................... Passed 0.35 sec | |
| Start 126: testcorenrn_conc::compare_results | |
| 141/184 Test #82: coreneuron_modtests::datareturn_py_cpu ............................. Passed 5.69 sec | |
| Start 132: testcorenrn_deriv::compare_results | |
| 142/184 Test #84: coreneuron_modtests::test_netmove_py_cpu ........................... Passed 5.53 sec | |
| Start 138: testcorenrn_gf::compare_results | |
| 143/184 Test #105: reduced_dentate::compare_results ................................... Passed 1.00 sec | |
| Start 144: testcorenrn_kin::compare_results | |
| 144/184 Test #120: testcorenrn_bbcore::compare_results ................................ Passed 1.07 sec | |
| Start 149: testcorenrn_patstim::compare_results | |
| 145/184 Test #126: testcorenrn_conc::compare_results .................................. Passed 1.06 sec | |
| Start 155: testcorenrn_vecplay::compare_results | |
| 146/184 Test #88: coreneuron_modtests::test_ba_py_cpu ................................ Passed 4.68 sec | |
| Start 167: testcorenrn_watch::compare_results | |
| 147/184 Test #132: testcorenrn_deriv::compare_results ................................. Passed 1.08 sec | |
| Start 170: testcorenrn_netstimdirect::compare_results | |
| 148/184 Test #89: coreneuron_modtests::test_natrans_py_cpu ........................... Passed 4.76 sec | |
| Start 175: channel_benchmark_hippo::compare_results | |
| 149/184 Test #138: testcorenrn_gf::compare_results .................................... Passed 1.08 sec | |
| Start 179: channel_benchmark_sscx::compare_results | |
| 150/184 Test #144: testcorenrn_kin::compare_results ................................... Passed 1.05 sec | |
| 151/184 Test #87: coreneuron_modtests::test_psolve_py_cpu ............................ Passed 5.49 sec | |
| Start 68: parallel::partrans | |
| 152/184 Test #86: coreneuron_modtests::test_watchrange_py_cpu ........................ Passed 5.52 sec | |
| 153/184 Test #149: testcorenrn_patstim::compare_results ............................... Passed 1.02 sec | |
| Start 69: parallel::netpar | |
| 154/184 Test #155: testcorenrn_vecplay::compare_results ............................... Passed 1.06 sec | |
| 155/184 Test #167: testcorenrn_watch::compare_results ................................. Passed 1.03 sec | |
| Start 70: parallel::bas | |
| 156/184 Test #170: testcorenrn_netstimdirect::compare_results ......................... Passed 1.01 sec | |
| 157/184 Test #175: channel_benchmark_hippo::compare_results ........................... Passed 0.97 sec | |
| Start 90: coreneuron_modtests::spikes_mpi_py_cpu | |
| 158/184 Test #94: nmodl_tests_coreneuron::test_table_coreneuron_cpu .................. Passed 5.49 sec | |
| 159/184 Test #179: channel_benchmark_sscx::compare_results ............................ Passed 0.94 sec | |
| Start 91: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 160/184 Test #95: nmodl_tests_coreneuron::test_disc_coreneuron_cpu ................... Passed 5.35 sec | |
| 161/184 Test #96: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu ......... Passed 5.18 sec | |
| Start 92: coreneuron_modtests::inputpresyn_py_cpu | |
| 162/184 Test #97: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu ................ Passed 5.34 sec | |
| 163/184 Test #85: coreneuron_modtests::test_pointer_py_cpu ........................... Passed 10.06 sec | |
| 164/184 Test #68: parallel::partrans ................................................. Passed 7.28 sec | |
| Start 156: testcorenrn_vecevent::neuron | |
| 165/184 Test #69: parallel::netpar ................................................... Passed 7.43 sec | |
| 166/184 Test #92: coreneuron_modtests::inputpresyn_py_cpu ............................ Passed 7.27 sec | |
| Start 157: testcorenrn_vecevent::coreneuron_cpu_online | |
| 167/184 Test #90: coreneuron_modtests::spikes_mpi_py_cpu ............................. Passed 8.05 sec | |
| 168/184 Test #91: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................... Passed 8.02 sec | |
| Start 158: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 169/184 Test #156: testcorenrn_vecevent::neuron ....................................... Passed 5.85 sec | |
| Start 159: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 170/184 Test #12: pynrn::basic_tests ................................................. Passed 35.82 sec | |
| 171/184 Test #70: parallel::bas ...................................................... Passed 15.32 sec | |
| 172/184 Test #157: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 7.94 sec | |
| Start 113: external_ringtest::coreneuron_cpu_mpi_threads | |
| 173/184 Test #158: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 8.01 sec | |
| Start 180: olfactory-bulb-3d::neuron | |
| 174/184 Test #159: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 3.76 sec | |
| Start 182: olfactory-bulb-3d::coreneuron_cpu_online | |
| Start 161: testcorenrn_vecevent::compare_results | |
| 175/184 Test #161: testcorenrn_vecevent::compare_results .............................. Passed 0.79 sec | |
| 176/184 Test #113: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 6.88 sec | |
| Start 67: parallel::subworld | |
| Start 114: external_ringtest::compare_results | |
| 177/184 Test #114: external_ringtest::compare_results ................................. Passed 0.66 sec | |
| 178/184 Test #67: parallel::subworld ................................................. Passed 6.20 sec | |
| Start 93: coreneuron_modtests::test_subworlds_py_cpu | |
| 179/184 Test #93: coreneuron_modtests::test_subworlds_py_cpu ......................... Passed 6.20 sec | |
| 180/184 Test #182: olfactory-bulb-3d::coreneuron_cpu_online ........................... Passed 43.86 sec | |
| 181/184 Test #180: olfactory-bulb-3d::neuron .......................................... Passed 51.80 sec | |
| Start 184: olfactory-bulb-3d::compare_results | |
| 182/184 Test #184: olfactory-bulb-3d::compare_results ................................. Passed 0.79 sec | |
| 183/184 Test #102: external_nrntest ................................................... Passed 661.34 sec | |
| Start 171: tqperf::coreneuron_special | |
| 184/184 Test #171: tqperf::coreneuron_special ......................................... Passed 12.59 sec | |
| 100% tests passed, 0 tests failed out of 184 | |
| Total Test time (real) = 735.69 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.10.8 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1678985719:step_script [0Ksection_start:1678985719:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=284750 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=608839 responseStatus[0;m=201 Created token[0;m=64_JT31_ | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=284848 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=608839 responseStatus[0;m=201 Created token[0;m=64_JT31_ | |
| section_end:1678985722:upload_artifacts_on_success [0Ksection_start:1678985722:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1678985724:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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