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famuvie / ggplot-posteriors_by_scenario.R
Created September 10, 2014 13:17
Plot posterior densities of MCMC chains, by scenario, parameter and replicas, together with priors and true values
### ggplot MCMC posteriors and priors by scenario, parameter and replicas ###
### Author : Facundo Muñoz (facundo.munoz@orleans.inra.fr)
### Licence: GPL-3
### Date : 2014-09-10
### Required packages
library(rlist) # data-manipulation
library(plyr)
library(reshape2)
@famuvie
famuvie / plot_blocks.R
Last active August 29, 2015 14:02
Plotting spatial blocks borders
# This procedure allows to plot blocks borders
# over some spatially-arranged variable
# Data is assumed to be on a regular grid
# The dataset contains row and column coordinates
# a numerical variable indicating the block number of the current cell
# and the numerical variable to be plotted
# Requirements:
# either package rgeos, which depends on [GEOS](http://trac.osgeo.org/geos/) (GEometry Open Source)
@famuvie
famuvie / count-grid.R
Last active December 30, 2015 01:59
Counting the number of points in each cell of a regular grid
library(ggplot2)
# Some fake points
N <- 500
loc <- matrix(runif(2*N), ncol=2)
# A regular (not necessarily square) grid
n.row <- 10
n.col <- 10
xrange <- range(loc[,1])