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Francesco G. Brundu fbrundu

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<style>
html {
font-size: 62.5% !important; }
body {
font-size: 1.5em !important; /* currently ems cause chrome bug misinterpreting rems on body element */
line-height: 1.6 !important;
font-weight: 400 !important;
font-family: "HelveticaNeue", "Helvetica Neue", Helvetica, Arial, sans-serif !important;
color: #222 !important; }
@fbrundu
fbrundu / custom.css
Created April 6, 2015 17:17
Custom css for ipython3 notebook
.CodeMirror, div.prompt.input_prompt, div.prompt.output_prompt, pre {
font-family: "Inconsolata for Powerline";
font-size: 100%;
}
@fbrundu
fbrundu / onedark-vivid.terminal
Created March 8, 2017 08:58
one dark vivid macOS terminal scheme
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE plist PUBLIC "-//Apple//DTD PLIST 1.0//EN" "http://www.apple.com/DTDs/PropertyList-1.0.dtd">
<plist version="1.0">
<dict>
<key>ANSIBlackColor</key>
<data>
YnBsaXN0MDDUAQIDBAUGFRZYJHZlcnNpb25YJG9iamVjdHNZJGFyY2hpdmVyVCR0b3AS
AAGGoKMHCA9VJG51bGzTCQoLDA0OVU5TUkdCXE5TQ29sb3JTcGFjZVYkY2xhc3NPECcw
LjExNzY0NzA1ODggMC4xMjk0MTE3NjQ3IDAuMTUyOTQxMTc2NQAQAYAC0hAREhNaJGNs
YXNzbmFtZVgkY2xhc3Nlc1dOU0NvbG9yohIUWE5TT2JqZWN0XxAPTlNLZXllZEFyY2hp
@fbrundu
fbrundu / gdc_tcga.py
Created March 27, 2017 14:39
Retrieve TCGA gene expression data using GDC api
# -*- coding: utf-8 -*-
import logging as log
import pandas as pd
import requests as rq
class TCGA:
def __init__(self, gdc_url='https://gdc-api.nci.nih.gov', per_page=100,
@fbrundu
fbrundu / makeenv.sh
Created April 5, 2017 13:16
Use local R installation
alias R="<path_to_R>/R-X.Y.Z/bin/R"
export R_LIBS="<path_to_R>/packages"
export PATH="<path_to_R>/R-X.Y.Z/bin:${PATH}"
#%%
# Compute posterior of theta from coin tosses
#%%
%config InlineBackend.figure_format = 'retina'
#%%
from matplotlib import pyplot as plt
import numpy as np
import seaborn as sns